Wall clock time and date at job start Tue Mar 31 2020 15:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30771 * 1 3 3 Si 1.86801 * 120.00007 * 2 1 4 4 H 1.48495 * 109.47216 * 240.00272 * 3 2 1 5 5 H 1.48508 * 109.47054 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47341 * 119.99738 * 3 2 1 7 7 C 1.40079 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00116 * 166.09951 * 7 2 1 9 9 C 1.40818 * 120.00119 * 346.09473 * 7 2 1 10 10 C 1.40365 * 120.41188 * 331.86602 * 9 7 2 11 11 C 1.40020 * 117.96999 * 180.27265 * 10 9 7 12 12 C 1.40789 * 121.38973 * 180.02562 * 11 10 9 13 13 C 1.36126 * 119.47373 * 180.02562 * 12 11 10 14 14 C 1.39170 * 121.45851 * 359.95325 * 13 12 11 15 15 C 1.36242 * 121.76017 * 0.02630 * 14 13 12 16 16 C 1.40482 * 119.70494 * 359.97438 * 15 14 13 17 17 N 1.33655 * 120.98610 * 179.97438 * 16 15 14 18 18 C 1.31638 * 121.73832 * 180.02562 * 17 16 15 19 19 C 1.47786 * 119.45214 * 180.02562 * 18 17 16 20 20 C 1.39529 * 120.47742 * 136.34252 * 19 18 17 21 21 N 1.31685 * 120.67182 * 179.97438 * 20 19 18 22 22 C 1.32525 * 121.78680 * 359.97438 * 21 20 19 23 23 N 1.38740 * 119.55542 * 180.02562 * 22 21 20 24 24 C 1.39437 * 120.89205 * 359.97438 * 22 21 20 25 25 Cl 1.73601 * 120.38675 * 180.02562 * 24 22 21 26 26 C 1.38029 * 119.23206 * 359.78539 * 24 22 21 27 27 H 0.97003 * 119.99950 * 0.02562 * 1 2 3 28 28 H 1.07990 * 121.01527 * 0.25449 * 10 9 7 29 29 H 1.08005 * 120.26449 * 0.04858 * 12 11 10 30 30 H 1.07997 * 119.27140 * 179.97438 * 13 12 11 31 31 H 1.08002 * 119.11441 * 179.97438 * 14 13 12 32 32 H 1.07996 * 120.14853 * 179.97438 * 15 14 13 33 33 H 1.07999 * 119.66216 * 359.95088 * 20 19 18 34 34 H 0.96995 * 119.99772 * 359.97438 * 23 22 21 35 35 H 0.97002 * 119.99711 * 180.02562 * 23 22 21 36 36 H 1.07991 * 120.81972 * 180.25353 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.0954 1.6965 -1.2125 5 1 1.2767 2.7465 -0.0006 6 1 3.0954 1.6965 1.2125 7 6 2.0081 -1.2131 0.0005 8 1 3.0645 -1.2269 -0.2242 9 6 1.3350 -2.4147 0.2941 10 6 0.2032 -2.4105 1.1244 11 6 -0.4230 -3.6350 1.3871 12 6 -1.5630 -3.7141 2.2094 13 6 -2.1404 -4.9252 2.4392 14 6 -1.6294 -6.0917 1.8779 15 6 -0.5295 -6.0785 1.0740 16 6 0.1150 -4.8617 0.7959 17 7 1.1961 -4.8192 0.0111 18 6 1.8118 -3.6875 -0.2589 19 6 3.0029 -3.6990 -1.1337 20 6 3.1580 -2.7353 -2.1308 21 7 4.2180 -2.7417 -2.9120 22 6 5.1724 -3.6525 -2.7863 23 7 6.2699 -3.6153 -3.6344 24 6 5.0891 -4.6470 -1.8126 25 17 6.3473 -5.8333 -1.6591 26 6 3.9971 -4.6745 -0.9688 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1729 -1.4910 1.5478 29 1 -1.9765 -2.8208 2.6541 30 1 -3.0145 -4.9821 3.0709 31 1 -2.1173 -7.0325 2.0859 32 1 -0.1548 -6.9995 0.6524 33 1 2.4008 -1.9768 -2.2633 34 1 6.3346 -2.9261 -4.3138 35 1 6.9720 -4.2790 -3.5483 36 1 3.9085 -5.4308 -0.2030 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245564145.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:04 Heat of formation + Delta-G solvation = 66.203707 kcal Electronic energy + Delta-G solvation = -23749.193635 eV Core-core repulsion = 20222.877266 eV Total energy + Delta-G solvation = -3526.316369 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.94955 -38.87496 -36.50047 -36.11309 -34.48782 -34.18619 -31.93162 -31.70549 -30.37724 -29.20242 -27.73185 -25.75335 -23.57496 -23.28599 -21.87417 -21.26458 -20.53316 -18.16418 -17.44370 -17.26955 -16.62580 -16.22335 -15.72211 -14.93634 -14.77737 -14.52181 -14.25407 -13.71951 -13.47232 -13.35368 -12.95216 -12.83231 -12.58226 -12.30270 -11.92976 -11.83928 -11.70040 -11.40274 -11.18624 -10.99930 -10.91080 -10.75791 -10.54661 -10.34040 -10.02898 -9.61629 -9.24319 -9.20665 -9.05386 -8.39731 -7.82678 -7.35556 -7.14193 -6.97929 -4.63894 1.23130 1.51889 1.83041 2.08546 2.32066 2.87759 2.92087 2.95118 3.38003 3.63743 3.69046 3.79214 4.22432 4.59155 4.85858 5.10191 5.33402 5.46682 5.51076 5.60301 5.64503 5.70978 5.97108 6.06120 6.17621 6.23546 6.31887 6.49912 6.69599 6.75688 6.80276 6.90690 6.97192 7.20329 7.31276 7.33548 7.34265 7.54773 7.63878 7.67619 7.84926 8.19379 8.38453 8.42812 8.46186 9.14497 9.81483 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.009236 B = 0.005407 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.890579 B = 5176.801505 C = 7861.751123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.432 4.432 8 H 0.089 0.911 9 C 0.079 3.921 10 C -0.168 4.168 11 C -0.045 4.045 12 C -0.129 4.129 13 C -0.118 4.118 14 C -0.177 4.177 15 C -0.060 4.060 16 C 0.028 3.972 17 N -0.458 5.458 18 C 0.123 3.877 19 C -0.096 4.096 20 C 0.187 3.813 21 N -0.533 5.533 22 C 0.405 3.595 23 N -0.850 5.850 24 C -0.163 4.163 25 Cl -0.079 7.079 26 C -0.005 4.005 27 H 0.289 0.711 28 H 0.132 0.868 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.178 0.822 34 H 0.404 0.596 35 H 0.406 0.594 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.975 -3.280 -2.229 7.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.148 4.148 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.461 4.461 8 H 0.107 0.893 9 C 0.074 3.926 10 C -0.194 4.194 11 C -0.047 4.047 12 C -0.148 4.148 13 C -0.136 4.136 14 C -0.198 4.198 15 C -0.079 4.079 16 C -0.095 4.095 17 N -0.164 5.164 18 C -0.032 4.032 19 C -0.102 4.102 20 C 0.028 3.972 21 N -0.251 5.251 22 C 0.167 3.833 23 N -0.395 5.395 24 C -0.197 4.197 25 Cl -0.051 7.051 26 C -0.032 4.032 27 H 0.100 0.900 28 H 0.150 0.850 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.195 0.805 34 H 0.233 0.767 35 H 0.237 0.763 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.150 -3.448 -3.146 7.721 hybrid contribution 0.216 0.788 0.853 1.181 sum 6.367 -2.660 -2.293 7.271 Atomic orbital electron populations 1.69746 1.07713 1.30345 1.31599 1.26000 0.94863 1.01656 0.92233 0.86275 0.80237 0.79472 0.80619 1.18259 1.19942 1.18489 1.19597 0.97049 0.90251 1.39170 0.89298 1.19160 0.92420 0.91324 0.89702 1.21486 1.00044 0.95462 1.02390 1.19709 0.94849 0.94014 0.96155 1.20865 0.96461 0.97070 1.00413 1.20485 0.99634 0.92990 1.00472 1.20273 0.99115 0.97484 1.02879 1.20495 0.94706 0.95814 0.96871 1.19277 0.95754 0.92470 1.01983 1.67401 1.07440 1.28586 1.13016 1.20702 0.95194 0.89451 0.97872 1.19128 0.95089 0.97174 0.98794 1.23058 0.92340 0.94822 0.86946 1.67413 1.03402 1.24599 1.29659 1.18083 0.88307 0.88972 0.87909 1.42139 1.22071 1.36844 1.38448 1.21022 0.95935 0.97930 1.04783 1.98303 1.52143 1.57128 1.97529 1.21377 0.89574 0.96524 0.95718 0.89966 0.84991 0.87062 0.87836 0.87694 0.86914 0.80515 0.76702 0.76342 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.57 10.99 55.55 0.61 -16.96 16 2 C 0.07 1.62 5.21 -17.31 -0.09 1.53 16 3 Si 0.91 16.74 29.58 -169.99 -5.03 11.71 16 4 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 5 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 6 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 7 C -0.43 -9.86 6.78 -37.92 -0.26 -10.12 16 8 H 0.09 1.97 6.50 -52.48 -0.34 1.62 16 9 C 0.08 1.89 5.66 -104.69 -0.59 1.30 16 10 C -0.17 -4.07 8.52 -38.11 -0.32 -4.39 16 11 C -0.04 -1.03 5.87 -104.97 -0.62 -1.65 16 12 C -0.13 -2.60 9.80 -39.38 -0.39 -2.99 16 13 C -0.12 -2.11 9.91 -39.99 -0.40 -2.51 16 14 C -0.18 -3.16 9.90 -39.95 -0.40 -3.56 16 15 C -0.06 -1.20 9.98 -39.46 -0.39 -1.59 16 16 C 0.03 0.64 6.74 -82.94 -0.56 0.08 16 17 N -0.46 -10.61 10.08 -4.84 -0.05 -10.65 16 18 C 0.12 2.81 6.56 -80.61 -0.53 2.29 16 19 C -0.10 -1.94 5.28 -104.75 -0.55 -2.49 16 20 C 0.19 3.61 9.02 -17.13 -0.15 3.46 16 21 N -0.53 -9.52 10.37 -12.08 -0.13 -9.65 16 22 C 0.41 6.46 7.74 -155.06 -1.20 5.26 16 23 N -0.85 -10.12 9.02 31.16 0.28 -9.84 16 24 C -0.16 -2.63 6.35 -39.21 -0.25 -2.88 16 25 Cl -0.08 -1.06 27.59 -51.86 -1.43 -2.49 16 26 C 0.00 -0.09 9.59 -38.90 -0.37 -0.46 16 27 H 0.29 6.01 8.29 -40.82 -0.34 5.67 16 28 H 0.13 3.23 6.35 -52.49 -0.33 2.90 16 29 H 0.11 2.05 8.06 -52.48 -0.42 1.63 16 30 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.11 2.03 8.06 -52.49 -0.42 1.61 16 33 H 0.18 3.51 6.77 -52.49 -0.36 3.15 16 34 H 0.40 4.14 8.95 -40.82 -0.37 3.77 16 35 H 0.41 4.08 7.46 -40.82 -0.30 3.77 16 36 H 0.14 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 326.49 15.07 4.92 4.92 Total: -1.00 -25.71 326.49 -10.84 -36.55 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -2.95 Total: 15.13 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -7.07 Total: -18.72 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.72 Total: -47.10 kcal Atomic # 14 Polarization: 16.74 SS G_CDS: -5.03 Total: 11.71 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.43 Total: -2.49 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -25.71 -10.84 -36.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245564145.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.758 kcal (2) G-P(sol) polarization free energy of solvation -25.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds