Wall clock time and date at job start Tue Mar 31 2020 15:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30771 * 1 3 3 Si 1.86801 * 120.00007 * 2 1 4 4 H 1.48495 * 109.47216 * 240.00272 * 3 2 1 5 5 H 1.48508 * 109.47054 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47341 * 119.99738 * 3 2 1 7 7 C 1.40079 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00116 * 166.09951 * 7 2 1 9 9 C 1.40818 * 120.00119 * 346.09473 * 7 2 1 10 10 C 1.40365 * 120.41188 * 331.86602 * 9 7 2 11 11 C 1.40020 * 117.96999 * 180.27265 * 10 9 7 12 12 C 1.40789 * 121.38973 * 180.02562 * 11 10 9 13 13 C 1.36126 * 119.47373 * 180.02562 * 12 11 10 14 14 C 1.39170 * 121.45851 * 359.95325 * 13 12 11 15 15 C 1.36242 * 121.76017 * 0.02630 * 14 13 12 16 16 C 1.40482 * 119.70494 * 359.97438 * 15 14 13 17 17 N 1.33655 * 120.98610 * 179.97438 * 16 15 14 18 18 C 1.31638 * 121.73832 * 180.02562 * 17 16 15 19 19 C 1.47786 * 119.45214 * 180.02562 * 18 17 16 20 20 C 1.39529 * 120.47742 * 136.34252 * 19 18 17 21 21 N 1.31685 * 120.67182 * 179.97438 * 20 19 18 22 22 C 1.32525 * 121.78680 * 359.97438 * 21 20 19 23 23 N 1.38740 * 119.55542 * 180.02562 * 22 21 20 24 24 C 1.39437 * 120.89205 * 359.97438 * 22 21 20 25 25 Cl 1.73601 * 120.38675 * 180.02562 * 24 22 21 26 26 C 1.38029 * 119.23206 * 359.78539 * 24 22 21 27 27 H 0.97003 * 119.99950 * 0.02562 * 1 2 3 28 28 H 1.07990 * 121.01527 * 0.25449 * 10 9 7 29 29 H 1.08005 * 120.26449 * 0.04858 * 12 11 10 30 30 H 1.07997 * 119.27140 * 179.97438 * 13 12 11 31 31 H 1.08002 * 119.11441 * 179.97438 * 14 13 12 32 32 H 1.07996 * 120.14853 * 179.97438 * 15 14 13 33 33 H 1.07999 * 119.66216 * 359.95088 * 20 19 18 34 34 H 0.96995 * 119.99772 * 359.97438 * 23 22 21 35 35 H 0.97002 * 119.99711 * 180.02562 * 23 22 21 36 36 H 1.07991 * 120.81972 * 180.25353 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.0954 1.6965 -1.2125 5 1 1.2767 2.7465 -0.0006 6 1 3.0954 1.6965 1.2125 7 6 2.0081 -1.2131 0.0005 8 1 3.0645 -1.2269 -0.2242 9 6 1.3350 -2.4147 0.2941 10 6 0.2032 -2.4105 1.1244 11 6 -0.4230 -3.6350 1.3871 12 6 -1.5630 -3.7141 2.2094 13 6 -2.1404 -4.9252 2.4392 14 6 -1.6294 -6.0917 1.8779 15 6 -0.5295 -6.0785 1.0740 16 6 0.1150 -4.8617 0.7959 17 7 1.1961 -4.8192 0.0111 18 6 1.8118 -3.6875 -0.2589 19 6 3.0029 -3.6990 -1.1337 20 6 3.1580 -2.7353 -2.1308 21 7 4.2180 -2.7417 -2.9120 22 6 5.1724 -3.6525 -2.7863 23 7 6.2699 -3.6153 -3.6344 24 6 5.0891 -4.6470 -1.8126 25 17 6.3473 -5.8333 -1.6591 26 6 3.9971 -4.6745 -0.9688 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1729 -1.4910 1.5478 29 1 -1.9765 -2.8208 2.6541 30 1 -3.0145 -4.9821 3.0709 31 1 -2.1173 -7.0325 2.0859 32 1 -0.1548 -6.9995 0.6524 33 1 2.4008 -1.9768 -2.2633 34 1 6.3346 -2.9261 -4.3138 35 1 6.9720 -4.2790 -3.5483 36 1 3.9085 -5.4308 -0.2030 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245564145.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:03 Heat of formation + Delta-G solvation = 53.341583 kcal Electronic energy + Delta-G solvation = -23749.751378 eV Core-core repulsion = 20222.877266 eV Total energy + Delta-G solvation = -3526.874112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.36959 -40.45186 -37.89147 -37.48204 -36.02823 -35.58987 -33.45572 -33.22743 -31.87847 -30.78721 -29.19961 -27.41763 -25.05639 -24.70245 -23.49707 -22.75151 -22.17139 -19.77821 -18.75569 -18.61041 -18.11484 -17.76148 -17.27966 -16.44002 -16.07152 -15.97085 -15.60559 -15.20014 -14.99298 -14.84589 -14.60373 -14.35189 -14.09445 -13.82453 -13.52019 -13.34192 -13.04722 -12.90621 -12.72680 -12.44993 -12.30850 -12.12359 -12.02694 -11.73948 -11.60210 -11.25518 -10.72575 -10.64640 -10.55230 -10.09933 -9.30859 -8.96652 -8.75890 -8.48284 -6.36942 -0.30723 0.10770 0.26287 0.55564 1.04606 1.37888 1.40859 1.50134 1.70534 2.15076 2.23167 2.46721 2.77338 2.96099 3.41264 3.64750 3.71575 4.01435 4.05210 4.07025 4.26283 4.29584 4.51923 4.54866 4.65297 4.72030 4.73092 4.97696 5.09858 5.20929 5.25917 5.40485 5.45432 5.58490 5.73467 5.79618 5.92096 5.97973 6.18846 6.25860 6.45247 6.50535 6.68182 6.73991 7.18378 7.43114 8.19324 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.009236 B = 0.005407 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.890579 B = 5176.801505 C = 7861.751123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.042 3.958 3 Si 0.974 3.026 4 H -0.255 1.255 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.447 4.447 8 H 0.089 0.911 9 C 0.054 3.946 10 C -0.196 4.196 11 C -0.067 4.067 12 C -0.150 4.150 13 C -0.104 4.104 14 C -0.162 4.162 15 C -0.076 4.076 16 C 0.000 4.000 17 N -0.470 5.470 18 C 0.116 3.884 19 C -0.121 4.121 20 C 0.186 3.814 21 N -0.542 5.542 22 C 0.410 3.590 23 N -0.827 5.827 24 C -0.162 4.162 25 Cl -0.048 7.048 26 C -0.004 4.004 27 H 0.295 0.705 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.129 0.871 33 H 0.163 0.837 34 H 0.415 0.585 35 H 0.418 0.582 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.730 -4.466 -2.338 8.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.177 4.177 3 Si 0.794 3.206 4 H -0.179 1.179 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.475 4.475 8 H 0.107 0.893 9 C 0.050 3.950 10 C -0.221 4.221 11 C -0.069 4.069 12 C -0.169 4.169 13 C -0.122 4.122 14 C -0.182 4.182 15 C -0.095 4.095 16 C -0.122 4.122 17 N -0.177 5.177 18 C -0.040 4.040 19 C -0.127 4.127 20 C 0.027 3.973 21 N -0.260 5.260 22 C 0.170 3.830 23 N -0.373 5.373 24 C -0.196 4.196 25 Cl -0.020 7.020 26 C -0.031 4.031 27 H 0.106 0.894 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.163 0.837 31 H 0.165 0.835 32 H 0.147 0.853 33 H 0.180 0.820 34 H 0.247 0.753 35 H 0.251 0.749 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.928 -4.655 -3.273 8.965 hybrid contribution 0.012 0.944 0.873 1.286 sum 6.940 -3.711 -2.400 8.227 Atomic orbital electron populations 1.69804 1.08994 1.31350 1.32411 1.26714 0.95399 1.04199 0.91376 0.85341 0.79016 0.75844 0.80390 1.17888 1.19023 1.18595 1.19692 0.97041 0.90709 1.40043 0.89344 1.19470 0.92942 0.92424 0.90209 1.21443 1.01302 0.95590 1.03814 1.20008 0.96028 0.93817 0.97068 1.21075 0.96201 0.98828 1.00798 1.20965 0.99963 0.91868 0.99418 1.20786 0.97675 0.99226 1.00465 1.20782 0.95584 0.95262 0.97867 1.19818 0.96252 0.93682 1.02454 1.67457 1.07934 1.28731 1.13616 1.21038 0.95926 0.89075 0.97928 1.19037 0.95258 0.98859 0.99563 1.22770 0.92730 0.94439 0.87321 1.67409 1.03531 1.25466 1.29597 1.18278 0.88545 0.88203 0.88015 1.42112 1.20763 1.37093 1.37350 1.20996 0.96062 0.98498 1.04022 1.98313 1.50421 1.55826 1.97427 1.21357 0.89801 0.95900 0.96049 0.89416 0.86435 0.86211 0.83711 0.83460 0.85348 0.82017 0.75341 0.74917 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.34 10.99 21.85 0.24 -38.10 16 2 C 0.04 1.90 5.21 85.30 0.44 2.34 16 3 Si 0.97 35.04 29.58 68.60 2.03 37.07 16 4 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 5 H -0.27 -9.10 7.11 99.48 0.71 -8.39 16 6 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 7 C -0.45 -21.52 6.78 23.35 0.16 -21.37 16 8 H 0.09 4.13 6.50 -2.91 -0.02 4.11 16 9 C 0.05 2.78 5.66 -19.91 -0.11 2.66 16 10 C -0.20 -10.08 8.52 23.22 0.20 -9.88 16 11 C -0.07 -3.21 5.87 -20.09 -0.12 -3.33 16 12 C -0.15 -6.05 9.80 22.40 0.22 -5.83 16 13 C -0.10 -3.47 9.91 22.00 0.22 -3.25 16 14 C -0.16 -5.27 9.90 22.03 0.22 -5.06 16 15 C -0.08 -2.96 9.98 22.35 0.22 -2.74 16 16 C 0.00 0.01 6.74 41.54 0.28 0.29 16 17 N -0.47 -22.66 10.08 -169.24 -1.71 -24.36 16 18 C 0.12 5.59 6.56 43.92 0.29 5.88 16 19 C -0.12 -5.08 5.28 -19.95 -0.11 -5.18 16 20 C 0.19 7.45 9.02 85.03 0.77 8.21 16 21 N -0.54 -19.24 10.37 -192.14 -1.99 -21.23 16 22 C 0.41 12.50 7.74 133.19 1.03 13.53 16 23 N -0.83 -17.57 9.02 -55.34 -0.50 -18.07 16 24 C -0.16 -5.03 6.35 22.51 0.14 -4.89 16 25 Cl -0.05 -1.18 27.59 -2.72 -0.08 -1.25 16 26 C 0.00 -0.15 9.59 22.71 0.22 0.07 16 27 H 0.29 12.76 8.29 -92.71 -0.77 11.99 16 28 H 0.12 6.20 6.35 -2.92 -0.02 6.18 16 29 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 30 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 31 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 32 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 33 H 0.16 6.87 6.77 -2.91 -0.02 6.85 16 34 H 0.42 7.38 8.95 -92.71 -0.83 6.55 16 35 H 0.42 7.09 7.46 -92.71 -0.69 6.40 16 36 H 0.14 5.03 8.06 -2.92 -0.02 5.01 16 Total: -1.00 -58.37 326.49 1.72 -56.65 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: -0.34 Total: 37.83 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: 4.07 Total: -28.53 kcal Atomic # 7 Polarization: -97.80 SS G_CDS: -3.96 Total: -101.76 kcal Atomic # 14 Polarization: 35.04 SS G_CDS: 2.03 Total: 37.07 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.25 kcal Total: -58.37 1.72 -56.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245564145.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.991 kcal (2) G-P(sol) polarization free energy of solvation -58.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds