Wall clock time and date at job start Tue Mar 31 2020 15:01:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.35537 * 116.99936 * 2 1
4 4 C 1.39125 * 120.48227 * 359.97438 * 3 2 1
5 5 C 1.38303 * 118.64868 * 180.02562 * 4 3 2
6 6 C 1.40127 * 119.56724 * 359.97438 * 5 4 3
7 7 C 1.48168 * 119.52490 * 180.02562 * 6 5 4
8 8 C 1.39497 * 120.08449 * 313.17497 * 7 6 5
9 9 C 1.38328 * 119.89962 * 179.97438 * 8 7 6
10 10 O 1.35995 * 119.95894 * 179.97438 * 9 8 7
11 11 C 1.39032 * 120.08050 * 0.02562 * 9 8 7
12 12 F 1.35102 * 119.91247 * 179.97438 * 11 9 8
13 13 C 1.38563 * 120.18026 * 0.02562 * 11 9 8
14 14 F 1.35099 * 119.95048 * 179.97438 * 13 11 9
15 15 C 1.38435 * 120.09310 * 359.67418 * 13 11 9
16 16 F 1.35106 * 120.04164 * 180.32100 * 15 13 11
17 17 N 1.32213 * 120.95740 * 359.73113 * 6 5 4
18 18 C 1.33597 * 121.44995 * 0.55562 * 17 6 5
19 19 C 1.40986 * 119.83120 * 179.71468 * 18 17 6
20 20 H 1.07999 * 119.99565 * 167.76604 * 19 18 17
21 21 C 1.40009 * 119.99887 * 348.04157 * 19 18 17
22 22 N 1.30785 * 119.99993 * 167.32810 * 21 19 18
23 23 Si 1.86803 * 120.00227 * 347.32728 * 21 19 18
24 24 H 1.48506 * 109.46959 * 85.11406 * 23 21 19
25 25 H 1.48498 * 109.47366 * 205.11634 * 23 21 19
26 26 H 1.48499 * 109.47282 * 325.11666 * 23 21 19
27 27 H 1.09007 * 109.46710 * 59.99625 * 1 2 3
28 28 H 1.08995 * 109.47100 * 179.97438 * 1 2 3
29 29 H 1.08999 * 109.47315 * 300.00060 * 1 2 3
30 30 H 1.08006 * 120.67804 * 0.03065 * 4 3 2
31 31 H 1.08005 * 120.21921 * 180.02562 * 5 4 3
32 32 H 1.07999 * 120.04708 * 359.97438 * 8 7 6
33 33 H 0.96705 * 113.99942 * 89.99838 * 10 9 8
34 34 H 0.96999 * 119.99882 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0443 1.2077 0.0000
4 6 1.2964 2.3808 -0.0005
5 6 1.9634 3.5924 -0.0011
6 6 3.3645 3.6103 -0.0005
7 6 4.0781 4.9088 -0.0005
8 6 3.6915 5.9192 -0.8811
9 6 4.3600 7.1302 -0.8775
10 8 3.9844 8.1159 -1.7358
11 6 5.4161 7.3405 0.0019
12 9 6.0670 8.5244 0.0022
13 6 5.8037 6.3388 0.8773
14 9 6.8309 6.5480 1.7295
15 6 5.1358 5.1263 0.8842
16 9 5.5103 4.1526 1.7427
17 7 4.0591 2.4853 0.0059
18 6 3.4556 1.2935 0.0009
19 6 4.2299 0.1153 0.0019
20 1 3.7617 -0.8384 0.1962
21 6 5.6067 0.1822 -0.2433
22 7 6.3651 -0.8555 -0.0020
23 14 6.3605 1.7538 -0.9153
24 1 6.6622 2.6776 0.2076
25 1 7.6150 1.4303 -1.6409
26 1 5.4033 2.4030 -1.8468
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3633 -1.0276 -0.0005
29 1 -0.3634 0.5138 0.8900
30 1 0.2169 2.3461 -0.0005
31 1 1.4080 4.5186 -0.0011
32 1 2.8714 5.7562 -1.5647
33 1 3.3103 8.7113 -1.3804
34 1 7.3190 -0.8092 -0.1722
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001245635545.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:01:37
Heat of formation + Delta-G solvation = -158.468754 kcal
Electronic energy + Delta-G solvation = -27355.567533 eV
Core-core repulsion = 22804.649979 eV
Total energy + Delta-G solvation = -4550.917554 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 325.071 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-49.65866 -48.96690 -48.24660 -39.81979 -39.15903 -37.39217 -36.39413 -33.88475
-31.73882 -31.13011 -29.77607 -28.83266 -26.89970 -25.79036 -23.63683 -23.13980
-21.76671 -20.97000 -18.84948 -18.19281 -17.99348 -17.76112 -17.15430 -17.01801
-16.56943 -16.16048 -15.59300 -15.44988 -15.13130 -15.00679 -14.90647 -14.65131
-14.42896 -14.29919 -13.95339 -13.51430 -13.14788 -12.90441 -12.69870 -12.57671
-12.20428 -11.96049 -11.56785 -11.47921 -11.15260 -10.95266 -10.84625 -10.78116
-10.43274 -10.05322 -9.36247 -8.97771 -8.72437 -8.67240 -8.03495 -7.48199
-7.02896 -4.70389 0.53011 0.67518 2.18333 2.34865 3.05321 3.23379
3.40907 3.47079 3.54051 3.80801 4.06701 4.10826 4.30464 4.32794
4.41834 4.47225 4.59269 5.12621 5.29558 5.47362 5.53874 5.58106
5.59318 5.68246 5.73810 5.81134 5.85271 5.94627 6.25174 6.35196
6.47919 6.83602 7.00324 7.09773 7.26229 7.39449 7.89360 8.09112
8.42860 8.53126 9.26752 9.89635
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.013837 B = 0.005225 C = 0.004220
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2023.035478 B = 5357.113268 C = 6633.421419
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.303 6.303
3 C 0.005 3.995
4 C -0.144 4.144
5 C -0.254 4.254
6 C 0.160 3.840
7 C -0.013 4.013
8 C -0.083 4.083
9 C 0.089 3.911
10 O -0.478 6.478
11 C 0.061 3.939
12 F -0.118 7.118
13 C 0.041 3.959
14 F -0.116 7.116
15 C 0.116 3.884
16 F -0.096 7.096
17 N -0.534 5.534
18 C 0.240 3.760
19 C -0.382 4.382
20 H 0.106 0.894
21 C 0.085 3.915
22 N -0.786 5.786
23 Si 0.981 3.019
24 H -0.263 1.263
25 H -0.326 1.326
26 H -0.265 1.265
27 H 0.044 0.956
28 H 0.088 0.912
29 H 0.043 0.957
30 H 0.114 0.886
31 H 0.109 0.891
32 H 0.160 0.840
33 H 0.394 0.606
34 H 0.292 0.708
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.160 12.471 -0.818 14.404
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.215 6.215
3 C -0.044 4.044
4 C -0.167 4.167
5 C -0.278 4.278
6 C 0.021 3.979
7 C -0.015 4.015
8 C -0.103 4.103
9 C 0.043 3.957
10 O -0.288 6.288
11 C 0.040 3.960
12 F -0.096 7.096
13 C 0.019 3.981
14 F -0.094 7.094
15 C 0.095 3.905
16 F -0.074 7.074
17 N -0.254 5.254
18 C 0.115 3.885
19 C -0.413 4.413
20 H 0.124 0.876
21 C -0.140 4.140
22 N -0.408 5.408
23 Si 0.814 3.186
24 H -0.188 1.188
25 H -0.259 1.259
26 H -0.191 1.191
27 H 0.062 0.938
28 H 0.106 0.894
29 H 0.062 0.938
30 H 0.132 0.868
31 H 0.127 0.873
32 H 0.178 0.822
33 H 0.251 0.749
34 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -5.535 11.804 -1.064 13.081
hybrid contribution -0.727 1.004 0.438 1.315
sum -6.262 12.808 -0.627 14.271
Atomic orbital electron populations
1.22848 0.80896 1.02526 1.00186 1.85997 1.18928 1.27202 1.89351
1.20020 0.92990 0.83690 1.07711 1.20917 0.98339 0.92157 1.05318
1.20709 0.92404 0.96955 1.17769 1.18733 0.89982 0.89297 0.99841
1.18628 0.93845 0.94682 0.94352 1.21330 1.00299 0.90610 0.98045
1.17871 0.95107 0.90529 0.92190 1.84918 1.62070 1.42231 1.39539
1.17705 0.96991 0.82424 0.98915 1.91523 1.79742 1.42741 1.95633
1.17280 0.91438 0.94143 0.95193 1.91550 1.55226 1.94997 1.67665
1.17469 0.95638 0.84716 0.92703 1.91658 1.89752 1.59636 1.66372
1.66975 1.36599 0.97013 1.24835 1.17951 0.86732 0.90761 0.93015
1.19479 0.91959 0.93805 1.36076 0.87599 1.26393 0.97067 0.99207
0.91314 1.69632 1.07644 1.31645 1.31858 0.84844 0.74342 0.79492
0.79875 1.18829 1.25884 1.19054 0.93786 0.89377 0.93819 0.86764
0.87294 0.82243 0.74914 0.89804
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.46 9.83 101.05 0.99 1.45 16
2 O -0.30 -6.32 9.64 -18.31 -0.18 -6.50 16
3 C 0.00 0.11 6.74 -38.05 -0.26 -0.14 16
4 C -0.14 -2.75 9.11 -39.23 -0.36 -3.10 16
5 C -0.25 -4.73 9.45 -38.85 -0.37 -5.10 16
6 C 0.16 3.35 6.14 -82.92 -0.51 2.84 16
7 C -0.01 -0.23 5.62 -104.84 -0.59 -0.82 16
8 C -0.08 -1.17 9.34 -39.08 -0.36 -1.53 16
9 C 0.09 1.16 6.70 -39.25 -0.26 0.89 16
10 O -0.48 -5.02 13.36 -19.73 -0.26 -5.28 16
11 C 0.06 0.89 7.31 -39.17 -0.29 0.60 16
12 F -0.12 -1.69 17.01 2.25 0.04 -1.65 16
13 C 0.04 0.68 7.30 -39.39 -0.29 0.39 16
14 F -0.12 -1.98 17.08 2.25 0.04 -1.94 16
15 C 0.12 2.18 7.24 -39.00 -0.28 1.90 16
16 F -0.10 -2.08 15.22 2.25 0.03 -2.05 16
17 N -0.53 -13.09 4.38 -7.57 -0.03 -13.12 16
18 C 0.24 6.08 6.25 -84.86 -0.53 5.55 16
19 C -0.38 -10.31 9.44 -37.88 -0.36 -10.67 16
20 H 0.11 2.96 7.59 -52.49 -0.40 2.56 16
21 C 0.08 2.25 5.52 -17.33 -0.10 2.16 16
22 N -0.79 -20.85 13.93 55.55 0.77 -20.07 16
23 Si 0.98 24.13 25.40 -169.99 -4.32 19.81 16
24 H -0.26 -6.55 6.06 56.52 0.34 -6.21 16
25 H -0.33 -7.83 7.11 56.52 0.40 -7.42 16
26 H -0.26 -6.63 6.71 56.52 0.38 -6.25 16
27 H 0.04 0.58 7.69 -51.92 -0.40 0.18 16
28 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16
29 H 0.04 0.58 7.69 -51.93 -0.40 0.18 16
30 H 0.11 1.80 6.43 -52.48 -0.34 1.46 16
31 H 0.11 1.64 7.96 -52.48 -0.42 1.23 16
32 H 0.16 1.89 7.96 -52.49 -0.42 1.48 16
33 H 0.39 1.98 9.07 45.56 0.41 2.39 16
34 H 0.29 7.07 8.29 -40.82 -0.34 6.73 16
LS Contribution 312.69 15.07 4.71 4.71
Total: -1.00 -30.37 312.69 -4.34 -34.72
By element:
Atomic # 1 Polarization: -1.45 SS G_CDS: -1.59 Total: -3.04 kcal
Atomic # 6 Polarization: -2.02 SS G_CDS: -3.55 Total: -5.58 kcal
Atomic # 7 Polarization: -33.93 SS G_CDS: 0.74 Total: -33.19 kcal
Atomic # 8 Polarization: -11.34 SS G_CDS: -0.44 Total: -11.78 kcal
Atomic # 9 Polarization: -5.75 SS G_CDS: 0.11 Total: -5.64 kcal
Atomic # 14 Polarization: 24.13 SS G_CDS: -4.32 Total: 19.81 kcal
Total LS contribution 4.71 Total: 4.71 kcal
Total: -30.37 -4.34 -34.72 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001245635545.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -123.753 kcal
(2) G-P(sol) polarization free energy of solvation -30.373 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.126 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.343 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.716 kcal
(6) G-S(sol) free energy of system = (1) + (5) -158.469 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds