Wall clock time and date at job start Tue Mar 31 2020 15:01:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.35537 * 116.99936 * 2 1
4 4 C 1.39125 * 120.48227 * 359.97438 * 3 2 1
5 5 C 1.38303 * 118.64868 * 180.02562 * 4 3 2
6 6 C 1.40127 * 119.56724 * 359.97438 * 5 4 3
7 7 C 1.48168 * 119.52490 * 180.02562 * 6 5 4
8 8 C 1.39497 * 120.08449 * 313.17497 * 7 6 5
9 9 C 1.38328 * 119.89962 * 179.97438 * 8 7 6
10 10 O 1.35995 * 119.95894 * 179.97438 * 9 8 7
11 11 C 1.39032 * 120.08050 * 0.02562 * 9 8 7
12 12 F 1.35102 * 119.91247 * 179.97438 * 11 9 8
13 13 C 1.38563 * 120.18026 * 0.02562 * 11 9 8
14 14 F 1.35099 * 119.95048 * 179.97438 * 13 11 9
15 15 C 1.38435 * 120.09310 * 359.67418 * 13 11 9
16 16 F 1.35106 * 120.04164 * 180.32100 * 15 13 11
17 17 N 1.32213 * 120.95740 * 359.73113 * 6 5 4
18 18 C 1.33597 * 121.44995 * 0.55562 * 17 6 5
19 19 C 1.40986 * 119.83120 * 179.71468 * 18 17 6
20 20 H 1.07999 * 119.99565 * 167.76604 * 19 18 17
21 21 C 1.40009 * 119.99887 * 348.04157 * 19 18 17
22 22 N 1.30785 * 119.99993 * 167.32810 * 21 19 18
23 23 Si 1.86803 * 120.00227 * 347.32728 * 21 19 18
24 24 H 1.48506 * 109.46959 * 85.11406 * 23 21 19
25 25 H 1.48498 * 109.47366 * 205.11634 * 23 21 19
26 26 H 1.48499 * 109.47282 * 325.11666 * 23 21 19
27 27 H 1.09007 * 109.46710 * 59.99625 * 1 2 3
28 28 H 1.08995 * 109.47100 * 179.97438 * 1 2 3
29 29 H 1.08999 * 109.47315 * 300.00060 * 1 2 3
30 30 H 1.08006 * 120.67804 * 0.03065 * 4 3 2
31 31 H 1.08005 * 120.21921 * 180.02562 * 5 4 3
32 32 H 1.07999 * 120.04708 * 359.97438 * 8 7 6
33 33 H 0.96705 * 113.99942 * 89.99838 * 10 9 8
34 34 H 0.96999 * 119.99882 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0443 1.2077 0.0000
4 6 1.2964 2.3808 -0.0005
5 6 1.9634 3.5924 -0.0011
6 6 3.3645 3.6103 -0.0005
7 6 4.0781 4.9088 -0.0005
8 6 3.6915 5.9192 -0.8811
9 6 4.3600 7.1302 -0.8775
10 8 3.9844 8.1159 -1.7358
11 6 5.4161 7.3405 0.0019
12 9 6.0670 8.5244 0.0022
13 6 5.8037 6.3388 0.8773
14 9 6.8309 6.5480 1.7295
15 6 5.1358 5.1263 0.8842
16 9 5.5103 4.1526 1.7427
17 7 4.0591 2.4853 0.0059
18 6 3.4556 1.2935 0.0009
19 6 4.2299 0.1153 0.0019
20 1 3.7617 -0.8384 0.1962
21 6 5.6067 0.1822 -0.2433
22 7 6.3651 -0.8555 -0.0020
23 14 6.3605 1.7538 -0.9153
24 1 6.6622 2.6776 0.2076
25 1 7.6150 1.4303 -1.6409
26 1 5.4033 2.4030 -1.8468
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3633 -1.0276 -0.0005
29 1 -0.3634 0.5138 0.8900
30 1 0.2169 2.3461 -0.0005
31 1 1.4080 4.5186 -0.0011
32 1 2.8714 5.7562 -1.5647
33 1 3.3103 8.7113 -1.3804
34 1 7.3190 -0.8092 -0.1722
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001245635545.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:01:36
Heat of formation + Delta-G solvation = -179.562624 kcal
Electronic energy + Delta-G solvation = -27356.482232 eV
Core-core repulsion = 22804.649979 eV
Total energy + Delta-G solvation = -4551.832253 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 325.071 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-50.93389 -50.27272 -49.60248 -41.25762 -40.47911 -38.81431 -37.59363 -35.69458
-33.32020 -32.70266 -31.06184 -30.22233 -28.25784 -27.42996 -24.95925 -24.40935
-23.39830 -22.45769 -20.03380 -19.63511 -19.35668 -19.26160 -18.67252 -18.25671
-17.86255 -17.66524 -17.05288 -16.87163 -16.58565 -16.42365 -16.25564 -16.01310
-15.63395 -15.61782 -15.24607 -15.03423 -14.64520 -14.57114 -14.46729 -13.80454
-13.69789 -13.51425 -13.03186 -12.83914 -12.72438 -12.59451 -12.37439 -12.10536
-11.92077 -11.73865 -11.29632 -10.38749 -10.27082 -9.92178 -9.77771 -9.12074
-8.94067 -6.58786 -0.71658 -0.51922 0.55549 0.68938 1.39395 1.50609
1.57679 1.84082 2.05091 2.33721 2.50446 2.70553 2.73974 2.90991
3.13997 3.16460 3.38898 3.52105 3.89966 4.09764 4.20272 4.31954
4.39644 4.50355 4.50632 4.60161 4.65591 4.77400 4.77838 4.82989
5.08845 5.24855 5.36271 5.46786 5.81018 6.10400 6.18692 6.55800
6.61403 6.90546 7.52594 8.05393
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.013837 B = 0.005225 C = 0.004220
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2023.035478 B = 5357.113268 C = 6633.421419
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.021 3.979
2 O -0.334 6.334
3 C -0.008 4.008
4 C -0.134 4.134
5 C -0.214 4.214
6 C 0.130 3.870
7 C -0.030 4.030
8 C -0.063 4.063
9 C 0.124 3.876
10 O -0.475 6.475
11 C 0.067 3.933
12 F -0.115 7.115
13 C 0.034 3.966
14 F -0.125 7.125
15 C 0.084 3.916
16 F -0.126 7.126
17 N -0.553 5.553
18 C 0.222 3.778
19 C -0.433 4.433
20 H 0.075 0.925
21 C 0.059 3.941
22 N -0.831 5.831
23 Si 1.026 2.974
24 H -0.275 1.275
25 H -0.324 1.324
26 H -0.272 1.272
27 H 0.064 0.936
28 H 0.109 0.891
29 H 0.061 0.939
30 H 0.161 0.839
31 H 0.162 0.838
32 H 0.192 0.808
33 H 0.425 0.575
34 H 0.295 0.705
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.660 16.546 -2.187 19.804
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 O -0.248 6.248
3 C -0.057 4.057
4 C -0.157 4.157
5 C -0.237 4.237
6 C -0.007 4.007
7 C -0.032 4.032
8 C -0.082 4.082
9 C 0.077 3.923
10 O -0.289 6.289
11 C 0.046 3.954
12 F -0.093 7.093
13 C 0.013 3.987
14 F -0.103 7.103
15 C 0.063 3.937
16 F -0.105 7.105
17 N -0.273 5.273
18 C 0.095 3.905
19 C -0.466 4.466
20 H 0.093 0.907
21 C -0.160 4.160
22 N -0.457 5.457
23 Si 0.859 3.141
24 H -0.201 1.201
25 H -0.256 1.256
26 H -0.198 1.198
27 H 0.082 0.918
28 H 0.127 0.873
29 H 0.079 0.921
30 H 0.178 0.822
31 H 0.180 0.820
32 H 0.210 0.790
33 H 0.287 0.713
34 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -9.077 15.936 -2.432 18.500
hybrid contribution -0.038 0.133 0.837 0.849
sum -9.115 16.068 -1.595 18.542
Atomic orbital electron populations
1.23240 0.77524 1.04770 1.01828 1.85970 1.22443 1.27030 1.89319
1.20123 0.92381 0.85539 1.07623 1.21474 1.00582 0.90830 1.02856
1.21423 0.91637 0.98946 1.11654 1.19347 0.91618 0.89396 1.00314
1.18613 0.94295 0.94460 0.95848 1.21545 1.00497 0.89421 0.96780
1.17683 0.93385 0.90784 0.90431 1.84878 1.63225 1.42021 1.38821
1.17796 0.97190 0.81862 0.98542 1.91540 1.79817 1.42382 1.95558
1.17353 0.91342 0.94221 0.95783 1.91522 1.55658 1.95007 1.68142
1.17791 0.97217 0.85039 0.93693 1.91576 1.90313 1.61007 1.67561
1.66800 1.38302 0.97886 1.24268 1.18078 0.88569 0.90573 0.93299
1.19275 0.92565 0.93655 1.41091 0.90685 1.26766 0.97295 1.00454
0.91498 1.69656 1.07948 1.32741 1.35341 0.84180 0.73627 0.77509
0.78745 1.20149 1.25636 1.19812 0.91777 0.87253 0.92086 0.82174
0.82000 0.79048 0.71332 0.89462
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.55 9.83 113.37 1.11 1.66 16
2 O -0.33 -13.85 9.64 -88.42 -0.85 -14.70 16
3 C -0.01 -0.35 6.74 23.26 0.16 -0.19 16
4 C -0.13 -4.49 9.11 22.50 0.21 -4.29 16
5 C -0.21 -6.83 9.45 22.74 0.21 -6.62 16
6 C 0.13 5.14 6.14 42.19 0.26 5.40 16
7 C -0.03 -1.00 5.62 -20.01 -0.11 -1.11 16
8 C -0.06 -1.45 9.34 22.59 0.21 -1.24 16
9 C 0.12 2.58 6.70 22.48 0.15 2.73 16
10 O -0.47 -7.00 13.36 -93.50 -1.25 -8.24 16
11 C 0.07 1.74 7.31 22.54 0.16 1.91 16
12 F -0.11 -2.91 17.01 44.97 0.76 -2.15 16
13 C 0.03 1.10 7.30 22.39 0.16 1.26 16
14 F -0.12 -4.25 17.08 44.97 0.77 -3.48 16
15 C 0.08 3.09 7.24 22.64 0.16 3.25 16
16 F -0.13 -5.67 15.22 44.97 0.68 -4.99 16
17 N -0.55 -27.26 4.38 -177.87 -0.78 -28.04 16
18 C 0.22 11.55 6.25 40.32 0.25 11.80 16
19 C -0.43 -25.08 9.44 23.37 0.22 -24.86 16
20 H 0.08 4.61 7.59 -2.91 -0.02 4.59 16
21 C 0.06 3.35 5.52 85.28 0.47 3.82 16
22 N -0.83 -47.63 13.93 21.84 0.30 -47.33 16
23 Si 1.03 52.38 25.40 68.60 1.74 54.12 16
24 H -0.27 -14.37 6.06 99.48 0.60 -13.77 16
25 H -0.32 -15.90 7.11 99.48 0.71 -15.19 16
26 H -0.27 -13.83 6.71 99.48 0.67 -13.16 16
27 H 0.06 1.41 7.69 -2.38 -0.02 1.39 16
28 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16
29 H 0.06 1.38 7.69 -2.39 -0.02 1.36 16
30 H 0.16 3.93 6.43 -2.91 -0.02 3.91 16
31 H 0.16 3.53 7.96 -2.91 -0.02 3.51 16
32 H 0.19 3.15 7.96 -2.91 -0.02 3.12 16
33 H 0.42 1.31 9.07 -74.05 -0.67 0.63 16
34 H 0.30 15.45 8.29 -92.71 -0.77 14.68 16
Total: -1.00 -73.28 312.69 5.41 -67.86
By element:
Atomic # 1 Polarization: -6.99 SS G_CDS: 0.39 Total: -6.60 kcal
Atomic # 6 Polarization: -10.09 SS G_CDS: 3.63 Total: -6.46 kcal
Atomic # 7 Polarization: -74.89 SS G_CDS: -0.47 Total: -75.37 kcal
Atomic # 8 Polarization: -20.84 SS G_CDS: -2.10 Total: -22.95 kcal
Atomic # 9 Polarization: -12.83 SS G_CDS: 2.22 Total: -10.62 kcal
Atomic # 14 Polarization: 52.38 SS G_CDS: 1.74 Total: 54.12 kcal
Total: -73.28 5.41 -67.86 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001245635545.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -111.699 kcal
(2) G-P(sol) polarization free energy of solvation -73.276 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.975 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.412 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.864 kcal
(6) G-S(sol) free energy of system = (1) + (5) -179.563 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds