Wall clock time and date at job start Tue Mar 31 2020 15:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35036 * 126.40109 * 2 1 4 4 N 1.30503 * 108.70333 * 179.76929 * 3 2 1 5 5 C 1.34122 * 109.25245 * 0.38261 * 4 3 2 6 6 S 1.76206 * 125.98968 * 179.88501 * 5 4 3 7 7 O 1.42099 * 106.40369 * 156.15036 * 6 5 4 8 8 O 1.42105 * 106.39931 * 23.22667 * 6 5 4 9 9 N 1.65605 * 107.21548 * 269.69137 * 6 5 4 10 10 C 1.39786 * 120.00124 * 64.99875 * 9 6 5 11 11 C 1.39405 * 119.91503 * 44.99752 * 10 9 6 12 12 C 1.38362 * 120.46608 * 179.70416 * 11 10 9 13 13 C 1.38009 * 120.28820 * 0.27497 * 12 11 10 14 14 F 1.35100 * 120.08886 * 179.97438 * 13 12 11 15 15 C 1.41006 * 119.81997 * 359.97438 * 13 12 11 16 16 C 1.41294 * 120.22848 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99309 * 334.70614 * 16 15 13 18 18 C 1.39912 * 120.00109 * 154.70630 * 16 15 13 19 19 N 1.30857 * 120.00192 * 342.87547 * 18 16 15 20 20 Si 1.86798 * 119.99950 * 162.87850 * 18 16 15 21 21 H 1.48501 * 109.47055 * 90.00050 * 20 18 16 22 22 H 1.48499 * 109.47167 * 209.99723 * 20 18 16 23 23 H 1.48495 * 109.47493 * 329.99737 * 20 18 16 24 24 C 1.38158 * 119.91093 * 225.25641 * 10 9 6 25 25 C 1.34673 * 108.02534 * 359.62060 * 5 4 3 26 26 H 1.09008 * 109.47198 * 269.99755 * 1 2 3 27 27 H 1.09001 * 109.47254 * 29.99482 * 1 2 3 28 28 H 1.09005 * 109.47603 * 149.99402 * 1 2 3 29 29 H 1.08008 * 125.64693 * 0.02562 * 3 2 1 30 30 H 0.96996 * 119.99516 * 244.99599 * 9 6 5 31 31 H 1.08000 * 119.76687 * 359.97438 * 11 10 9 32 32 H 1.08000 * 119.85514 * 180.25433 * 12 11 10 33 33 H 0.96995 * 120.00088 * 180.02562 * 19 18 16 34 34 H 1.07997 * 120.15175 * 359.97438 * 24 10 9 35 35 H 1.07997 * 126.59592 * 180.20739 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5096 0.6902 0.0050 5 6 3.5460 -0.6506 -0.0002 6 16 4.9993 -1.6469 0.0007 7 8 4.6235 -2.9043 0.5457 8 8 6.0368 -0.8427 0.5449 9 7 5.4039 -1.9249 -1.5809 10 6 5.7920 -0.8611 -2.4005 11 6 6.6951 0.0888 -1.9256 12 6 7.0917 1.1430 -2.7292 13 6 6.5922 1.2685 -4.0096 14 9 6.9818 2.2998 -4.7906 15 6 5.6740 0.3175 -4.5004 16 6 5.1576 0.4374 -5.8101 17 1 5.1146 1.4054 -6.2870 18 6 4.7018 -0.6979 -6.4890 19 7 5.0478 -1.8903 -6.0757 20 14 3.5995 -0.5116 -7.9855 21 1 4.4367 -0.4211 -9.2087 22 1 2.6999 -1.6886 -8.0873 23 1 2.7857 0.7231 -7.8502 24 6 5.2754 -0.7508 -3.6771 25 6 2.2771 -1.1019 -0.0002 26 1 -0.3634 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5139 29 1 1.9334 2.1144 0.0004 30 1 5.3716 -2.8260 -1.9386 31 1 7.0913 -0.0012 -0.9249 32 1 7.7950 1.8710 -2.3527 33 1 4.7322 -2.6774 -6.5465 34 1 4.5729 -1.4848 -4.0433 35 1 1.9611 -2.1346 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259000365.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:22 Heat of formation + Delta-G solvation = -57.007503 kcal Electronic energy + Delta-G solvation = -25286.435097 eV Core-core repulsion = 21326.050371 eV Total energy + Delta-G solvation = -3960.384726 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.16314 -43.13723 -39.71264 -38.26034 -36.97552 -36.26317 -35.10090 -34.92017 -31.67243 -30.95051 -29.34374 -28.04420 -27.23833 -23.49594 -23.41623 -22.68867 -22.38789 -20.50277 -19.51315 -18.90321 -18.70616 -17.92623 -17.78212 -16.97001 -16.74740 -16.69802 -16.31076 -16.13094 -15.93376 -15.17172 -15.08806 -14.81007 -14.43577 -14.26622 -13.94263 -13.89421 -13.51098 -13.46517 -13.38539 -13.27714 -13.00634 -12.78555 -12.65547 -12.62081 -12.28776 -12.04588 -11.54598 -11.16483 -11.13017 -10.97225 -10.82798 -10.04111 -9.51873 -8.95848 -8.64214 -6.42554 -0.66271 0.59533 0.76358 0.89968 1.38288 1.46306 1.53396 1.59539 1.76886 2.15407 2.19552 2.61206 2.72462 3.19992 3.47459 3.82227 3.92088 3.95995 4.07597 4.18093 4.28713 4.42590 4.51641 4.70487 4.79434 4.97236 5.00504 5.09709 5.21393 5.26600 5.46797 5.78557 5.80230 5.98322 6.06221 6.13650 6.21180 6.54439 6.76651 6.77104 6.86309 8.25782 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.011596 B = 0.005058 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.103846 B = 5533.960970 C = 6307.730532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.450 5.450 3 C 0.184 3.816 4 N -0.458 5.458 5 C -0.589 4.589 6 S 2.742 3.258 7 O -0.972 6.972 8 O -0.972 6.972 9 N -1.043 6.043 10 C 0.159 3.841 11 C -0.234 4.234 12 C -0.102 4.102 13 C -0.062 4.062 14 F -0.169 7.169 15 C 0.071 3.929 16 C -0.489 4.489 17 H 0.072 0.928 18 C 0.042 3.958 19 N -0.812 5.812 20 Si 0.982 3.018 21 H -0.264 1.264 22 H -0.258 1.258 23 H -0.261 1.261 24 C -0.162 4.162 25 C 0.075 3.925 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.249 0.751 30 H 0.430 0.570 31 H 0.142 0.858 32 H 0.129 0.871 33 H 0.294 0.706 34 H 0.126 0.874 35 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.010 -1.547 8.562 16.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.128 5.128 3 C -0.103 4.103 4 N -0.175 5.175 5 C -0.802 4.802 6 S 2.832 3.168 7 O -0.962 6.962 8 O -0.962 6.962 9 N -0.795 5.795 10 C 0.063 3.937 11 C -0.256 4.256 12 C -0.122 4.122 13 C -0.083 4.083 14 F -0.148 7.148 15 C 0.067 3.933 16 C -0.518 4.518 17 H 0.090 0.910 18 C -0.174 4.174 19 N -0.436 5.436 20 Si 0.802 3.198 21 H -0.189 1.189 22 H -0.181 1.181 23 H -0.185 1.185 24 C -0.186 4.186 25 C -0.069 4.069 26 H 0.121 0.879 27 H 0.131 0.869 28 H 0.124 0.876 29 H 0.264 0.736 30 H 0.268 0.732 31 H 0.159 0.841 32 H 0.147 0.853 33 H 0.105 0.895 34 H 0.144 0.856 35 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -13.052 -1.425 9.353 16.120 hybrid contribution -1.221 -0.148 -1.350 1.826 sum -14.273 -1.573 8.003 16.439 Atomic orbital electron populations 1.22637 0.72402 1.07247 1.05982 1.46066 1.10144 1.05766 1.50867 1.26077 0.84839 0.95672 1.03708 1.70271 1.22060 1.08683 1.16490 1.32920 1.16777 1.03631 1.26894 1.00373 0.73020 0.72079 0.71282 1.93549 1.84905 1.41266 1.76431 1.93474 1.55058 1.70910 1.76735 1.52871 1.81000 1.15075 1.30573 1.17125 0.96233 0.88875 0.91427 1.21060 1.04074 0.98468 1.01974 1.20625 1.00584 0.99050 0.91928 1.18187 1.05692 0.92597 0.91832 1.91234 1.90519 1.57594 1.75461 1.17754 0.90048 0.91190 0.94271 1.19632 1.37572 0.95586 0.99018 0.90998 1.26675 0.95285 0.93702 1.01781 1.69822 1.34770 0.99738 1.39319 0.85207 0.78256 0.79436 0.76892 1.18877 1.18149 1.18537 1.21020 1.03565 1.01551 0.92448 1.23162 0.88847 0.95286 0.99647 0.87862 0.86882 0.87582 0.73563 0.73232 0.84073 0.85294 0.89489 0.85625 0.76084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 11.18 127.77 1.43 1.83 16 2 N -0.45 -8.70 3.15 -552.52 -1.74 -10.44 16 3 C 0.18 4.52 12.56 180.26 2.26 6.79 16 4 N -0.46 -16.21 11.25 -197.77 -2.23 -18.44 16 5 C -0.59 -19.62 7.06 83.53 0.59 -19.03 16 6 S 2.74 97.89 5.82 -56.49 -0.33 97.56 16 7 O -0.97 -33.63 17.84 -128.00 -2.28 -35.91 16 8 O -0.97 -41.01 14.92 -128.00 -1.91 -42.92 16 9 N -1.04 -38.66 5.76 -51.45 -0.30 -38.95 16 10 C 0.16 7.22 6.20 38.13 0.24 7.45 16 11 C -0.23 -10.98 9.19 22.58 0.21 -10.78 16 12 C -0.10 -4.92 10.00 22.24 0.22 -4.70 16 13 C -0.06 -3.31 7.31 22.89 0.17 -3.14 16 14 F -0.17 -8.88 16.71 44.97 0.75 -8.13 16 15 C 0.07 3.88 5.57 -21.26 -0.12 3.76 16 16 C -0.49 -26.38 8.77 23.43 0.21 -26.17 16 17 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 18 C 0.04 2.04 5.15 85.24 0.44 2.48 16 19 N -0.81 -39.56 10.97 21.82 0.24 -39.32 16 20 Si 0.98 36.49 29.59 68.60 2.03 38.52 16 21 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 22 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 23 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 24 C -0.16 -8.14 8.60 22.84 0.20 -7.95 16 25 C 0.08 1.83 11.31 83.09 0.94 2.77 16 26 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16 27 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.25 3.77 8.06 -2.91 -0.02 3.75 16 30 H 0.43 13.63 8.95 -96.75 -0.87 12.77 16 31 H 0.14 6.49 5.55 -2.91 -0.02 6.47 16 32 H 0.13 5.46 8.06 -2.91 -0.02 5.44 16 33 H 0.29 12.71 8.30 -92.71 -0.77 11.94 16 34 H 0.13 6.28 6.19 -2.91 -0.02 6.26 16 35 H 0.22 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -76.61 325.58 1.31 -75.29 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.30 Total: 29.42 kcal Atomic # 6 Polarization: -53.46 SS G_CDS: 6.78 Total: -46.68 kcal Atomic # 7 Polarization: -103.13 SS G_CDS: -4.02 Total: -107.15 kcal Atomic # 8 Polarization: -74.64 SS G_CDS: -4.19 Total: -78.83 kcal Atomic # 9 Polarization: -8.88 SS G_CDS: 0.75 Total: -8.13 kcal Atomic # 14 Polarization: 36.49 SS G_CDS: 2.03 Total: 38.52 kcal Atomic # 16 Polarization: 97.89 SS G_CDS: -0.33 Total: 97.56 kcal Total: -76.61 1.31 -75.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259000365.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.287 kcal (2) G-P(sol) polarization free energy of solvation -76.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds