Wall clock time and date at job start Tue Mar 31 2020 14:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39337 * 119.70100 * 57.79389 * 3 2 1 5 5 C 1.38658 * 119.20500 * 179.76982 * 4 3 2 6 6 C 1.38414 * 118.58674 * 0.50124 * 5 4 3 7 7 C 1.39296 * 119.32325 * 359.74254 * 6 5 4 8 8 N 1.39305 * 119.62164 * 179.97438 * 7 6 5 9 9 C 1.34782 * 119.99772 * 174.93183 * 8 7 6 10 10 O 1.21553 * 119.99679 * 5.09773 * 9 8 7 11 11 C 1.47822 * 120.00123 * 185.09826 * 9 8 7 12 12 C 1.39693 * 120.09733 * 359.72867 * 11 9 8 13 13 C 1.38040 * 120.03065 * 179.71955 * 12 11 9 14 14 C 1.38185 * 120.24570 * 0.55523 * 13 12 11 15 15 C 1.39184 * 120.20507 * 359.72103 * 14 13 12 16 16 S 1.76202 * 120.01958 * 179.97438 * 15 14 13 17 17 C 1.76199 * 99.99832 * 275.01020 * 16 15 14 18 18 H 1.08000 * 120.00273 * 354.99790 * 17 16 15 19 19 C 1.38726 * 119.99823 * 174.99566 * 17 16 15 20 20 N 1.31626 * 120.00246 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00142 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47328 * 89.99974 * 21 19 17 23 23 H 1.48500 * 109.47389 * 209.99831 * 21 19 17 24 24 H 1.48499 * 109.46906 * 329.99676 * 21 19 17 25 25 C 1.38863 * 119.96219 * 359.97438 * 15 14 13 26 26 N 1.32102 * 120.75301 * 0.02562 * 7 6 5 27 27 H 1.07998 * 120.39581 * 0.02562 * 4 3 2 28 28 H 1.07998 * 120.70882 * 180.22437 * 5 4 3 29 29 H 1.08006 * 120.33761 * 179.76988 * 6 5 4 30 30 H 0.96999 * 120.00202 * 354.93981 * 8 7 6 31 31 H 1.07994 * 119.98949 * 359.97438 * 12 11 9 32 32 H 1.07998 * 119.87601 * 180.25204 * 13 12 11 33 33 H 1.08002 * 119.89581 * 179.74315 * 14 13 12 34 34 H 0.97001 * 120.00528 * 180.02562 * 20 19 17 35 35 H 1.07999 * 120.12694 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2586 -0.6441 -1.0241 5 6 4.6451 -0.6330 -1.0165 6 6 5.2966 0.0131 0.0198 7 6 4.5462 0.6339 1.0157 8 7 5.1955 1.2855 2.0618 9 6 4.4809 1.9751 2.9731 10 8 3.2661 1.9524 2.9365 11 6 5.1744 2.7590 4.0170 12 6 6.5704 2.7819 4.0643 13 6 7.2167 3.5190 5.0362 14 6 6.4877 4.2274 5.9723 15 6 5.0964 4.2070 5.9380 16 16 4.1718 5.1115 7.1345 17 6 4.1348 3.9351 8.4457 18 1 4.5473 2.9481 8.2975 19 6 3.5758 4.2768 9.6685 20 7 3.5486 3.3983 10.6483 21 14 2.8617 5.9838 9.9248 22 1 1.4249 5.9808 9.5496 23 1 2.9997 6.3691 11.3523 24 1 3.5929 6.9587 9.0761 25 6 4.4375 3.4735 4.9603 26 7 3.2259 0.6110 0.9798 27 1 2.7204 -1.1430 -1.8165 28 1 5.2049 -1.1219 -1.8001 29 1 6.3759 0.0360 0.0557 30 1 6.1618 1.2430 2.1344 31 1 7.1443 2.2260 3.3378 32 1 8.2960 3.5382 5.0680 33 1 6.9992 4.7989 6.7327 34 1 3.1575 3.6370 11.5032 35 1 3.3580 3.4561 4.9309 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361418856.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:56 Heat of formation + Delta-G solvation = 78.868138 kcal Electronic energy + Delta-G solvation = -22430.041260 eV Core-core repulsion = 18906.317769 eV Total energy + Delta-G solvation = -3523.723491 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.063 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.28243 -39.75667 -38.01783 -36.77890 -35.18872 -33.04877 -32.52599 -31.68996 -30.75726 -30.14045 -25.71750 -25.52746 -24.74242 -23.09234 -22.34806 -20.68829 -20.17292 -18.42825 -17.43890 -17.28252 -16.64459 -16.19236 -15.79787 -15.65403 -15.37657 -15.00666 -14.55333 -14.53472 -14.10834 -13.81919 -13.55109 -13.43340 -13.24143 -12.99801 -12.94720 -12.67766 -12.50241 -12.03473 -11.41627 -11.29690 -11.11578 -11.10532 -10.71197 -10.51926 -10.31736 -9.95003 -9.49218 -9.29415 -9.08092 -8.84173 -8.67059 -8.23252 -7.17007 -6.35306 -4.11611 0.16741 0.71711 1.06727 1.49227 2.15203 2.47741 2.60153 2.84648 2.96704 3.25322 3.26789 3.37246 3.45930 3.61023 3.97372 4.16062 4.23954 4.38690 4.44258 4.59906 4.76952 4.84374 4.85319 4.91251 5.03505 5.06799 5.32781 5.56579 5.57326 5.67676 5.70196 5.79331 6.07244 6.23352 6.37915 6.47031 6.69806 6.83084 7.01194 7.13925 7.54175 7.88511 8.04573 8.41130 9.08100 10.73954 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.017284 B = 0.002760 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.620200 B =10140.965680 C =11281.191469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C 0.268 3.732 3 C 0.228 3.772 4 C -0.156 4.156 5 C -0.044 4.044 6 C -0.183 4.183 7 C 0.378 3.622 8 N -0.660 5.660 9 C 0.554 3.446 10 O -0.461 6.461 11 C -0.154 4.154 12 C -0.086 4.086 13 C -0.137 4.137 14 C -0.048 4.048 15 C -0.083 4.083 16 S -0.111 6.111 17 C -0.510 4.510 18 H 0.091 0.909 19 C 0.096 3.904 20 N -0.876 5.876 21 Si 0.854 3.146 22 H -0.266 1.266 23 H -0.272 1.272 24 H -0.235 1.235 25 C -0.014 4.014 26 N -0.448 5.448 27 H 0.146 0.854 28 H 0.151 0.849 29 H 0.146 0.854 30 H 0.419 0.581 31 H 0.119 0.881 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.272 0.728 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.145 -6.751 -23.789 27.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.061 5.061 2 C -0.050 4.050 3 C 0.088 3.912 4 C -0.181 4.181 5 C -0.069 4.069 6 C -0.207 4.207 7 C 0.144 3.856 8 N -0.308 5.308 9 C 0.342 3.658 10 O -0.329 6.329 11 C -0.159 4.159 12 C -0.105 4.105 13 C -0.157 4.157 14 C -0.069 4.069 15 C -0.194 4.194 16 S 0.123 5.877 17 C -0.657 4.657 18 H 0.109 0.891 19 C -0.113 4.113 20 N -0.512 5.512 21 Si 0.678 3.322 22 H -0.191 1.191 23 H -0.197 1.197 24 H -0.159 1.159 25 C -0.036 4.036 26 N -0.165 5.165 27 H 0.164 0.836 28 H 0.169 0.831 29 H 0.164 0.836 30 H 0.258 0.742 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.152 0.848 34 H 0.082 0.918 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.502 -5.215 -22.830 24.590 hybrid contribution 1.704 -1.073 -0.031 2.014 sum 9.206 -6.288 -22.860 25.434 Atomic orbital electron populations 1.81244 1.11525 1.06680 1.06688 1.24950 0.91664 0.94341 0.94015 1.16150 0.86203 0.96684 0.92137 1.21912 0.95091 1.01570 0.99515 1.21326 0.93486 0.95172 0.96962 1.21746 1.01573 1.02024 0.95373 1.18257 0.87893 0.91420 0.87987 1.43639 1.11227 1.50568 1.25339 1.18623 0.87359 0.78907 0.80884 1.90917 1.12766 1.58889 1.70343 1.19694 0.93784 1.03650 0.98761 1.21157 0.92728 0.98346 0.98286 1.21067 0.99920 0.98801 0.95935 1.21999 0.93388 0.95217 0.96256 1.22192 0.96202 1.01373 0.99601 1.83103 1.68608 1.24849 1.11137 1.22237 1.46634 1.00086 0.96698 0.89051 1.24731 0.94404 0.97677 0.94511 1.69921 1.43102 1.34648 1.03514 0.86791 0.81218 0.84909 0.79283 1.19094 1.19699 1.15944 1.21867 1.00937 0.90326 0.90425 1.67495 1.07879 1.17610 1.23487 0.83596 0.83147 0.83577 0.74171 0.86271 0.85430 0.84758 0.91767 0.83999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.64 18.54 41.83 0.78 -4.86 16 2 C 0.27 3.41 15.53 -22.47 -0.35 3.06 16 3 C 0.23 2.44 6.58 -85.08 -0.56 1.88 16 4 C -0.16 -0.97 9.79 -39.02 -0.38 -1.35 16 5 C -0.04 -0.19 10.16 -39.36 -0.40 -0.59 16 6 C -0.18 -1.00 9.94 -39.12 -0.39 -1.39 16 7 C 0.38 3.83 7.42 -154.92 -1.15 2.68 16 8 N -0.66 -6.64 5.33 -12.29 -0.07 -6.71 16 9 C 0.55 8.25 7.73 -12.34 -0.10 8.15 16 10 O -0.46 -8.83 14.60 5.32 0.08 -8.76 16 11 C -0.15 -2.33 5.87 -105.00 -0.62 -2.94 16 12 C -0.09 -1.00 9.54 -39.11 -0.37 -1.38 16 13 C -0.14 -1.74 10.02 -39.67 -0.40 -2.14 16 14 C -0.05 -0.79 9.79 -39.25 -0.38 -1.18 16 15 C -0.08 -1.66 5.45 -39.00 -0.21 -1.88 16 16 S -0.11 -2.65 19.38 -107.50 -2.08 -4.73 16 17 C -0.51 -14.44 10.01 30.91 0.31 -14.13 16 18 H 0.09 2.81 8.02 -52.49 -0.42 2.39 16 19 C 0.10 2.74 5.50 -17.46 -0.10 2.65 16 20 N -0.88 -26.15 13.97 55.49 0.78 -25.38 16 21 Si 0.85 20.80 27.74 -169.99 -4.71 16.09 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.24 -5.52 6.74 56.52 0.38 -5.14 16 25 C -0.01 -0.26 9.34 -38.92 -0.36 -0.63 16 26 N -0.45 -6.00 7.79 -10.29 -0.08 -6.08 16 27 H 0.15 0.52 8.06 -52.49 -0.42 0.09 16 28 H 0.15 0.10 8.06 -52.49 -0.42 -0.32 16 29 H 0.15 0.29 8.06 -52.48 -0.42 -0.13 16 30 H 0.42 2.43 6.74 -40.82 -0.28 2.16 16 31 H 0.12 0.81 6.41 -52.49 -0.34 0.47 16 32 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 34 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.14 2.89 7.65 -52.49 -0.40 2.49 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -36.53 338.36 -8.38 -44.91 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -2.70 Total: -0.40 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -5.46 Total: -9.18 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 1.40 Total: -43.03 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.08 Total: -8.76 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.71 Total: 16.09 kcal Atomic # 16 Polarization: -2.65 SS G_CDS: -2.08 Total: -4.73 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.53 -8.38 -44.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361418856.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.781 kcal (2) G-P(sol) polarization free energy of solvation -36.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds