Wall clock time and date at job start Tue Mar 31 2020 14:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86801 * 120.00269 * 2 1 4 4 H 1.48501 * 109.46650 * 269.99825 * 3 2 1 5 5 H 1.48495 * 109.47067 * 29.99776 * 3 2 1 6 6 H 1.48498 * 109.46821 * 150.00319 * 3 2 1 7 7 C 1.39939 * 119.99564 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99624 * 196.79863 * 7 2 1 9 9 C 1.41402 * 119.99697 * 16.79600 * 7 2 1 10 10 C 1.40775 * 120.21706 * 25.17919 * 9 7 2 11 11 C 1.37643 * 119.89446 * 179.97438 * 10 9 7 12 12 C 1.38522 * 120.32292 * 359.97438 * 11 10 9 13 13 C 1.39262 * 120.42757 * 0.02562 * 12 11 10 14 14 N 1.39864 * 119.95116 * 179.97438 * 13 12 11 15 15 C 1.34770 * 120.00114 * 145.77733 * 14 13 12 16 16 O 1.21584 * 120.00226 * 354.88428 * 15 14 13 17 17 C 1.47640 * 120.00054 * 174.88297 * 15 14 13 18 18 C 1.40797 * 119.46065 * 359.97438 * 17 15 14 19 19 C 1.35098 * 121.44312 * 179.97438 * 18 17 15 20 20 C 1.41948 * 120.25358 * 0.04514 * 19 18 17 21 21 N 1.32261 * 130.71753 * 179.97438 * 20 19 18 22 22 S 1.55516 * 109.48897 * 179.97438 * 21 20 19 23 23 N 1.55526 * 100.22287 * 0.02562 * 22 21 20 24 24 C 1.32474 * 109.37391 * 359.97438 * 23 22 21 25 25 C 1.37991 * 119.46569 * 179.97438 * 17 15 14 26 26 C 1.38301 * 120.10103 * 0.26869 * 13 12 11 27 27 H 0.97004 * 119.99401 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.05064 * 359.97438 * 10 9 7 29 29 H 1.08004 * 119.83615 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.78262 * 180.02562 * 12 11 10 31 31 H 0.97000 * 119.99226 * 325.77399 * 14 13 12 32 32 H 1.08002 * 119.27961 * 0.02562 * 18 17 15 33 33 H 1.07996 * 119.87187 * 180.02562 * 19 18 17 34 34 H 1.08007 * 120.15400 * 0.02917 * 25 17 15 35 35 H 1.08005 * 120.16232 * 179.73307 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4399 2.6526 0.7000 6 1 3.5399 1.4400 0.7000 7 6 2.0079 -1.2120 0.0005 8 1 3.0533 -1.2318 0.2709 9 6 1.3460 -2.4105 -0.3528 10 6 0.2109 -2.3742 -1.1846 11 6 -0.4280 -3.5450 -1.5248 12 6 0.0407 -4.7601 -1.0530 13 6 1.1625 -4.8116 -0.2293 14 7 1.6269 -6.0439 0.2418 15 6 2.9485 -6.2456 0.4119 16 8 3.7430 -5.3916 0.0689 17 6 3.4316 -7.5037 1.0149 18 6 2.5016 -8.4848 1.4086 19 6 2.8994 -9.6504 1.9637 20 6 4.2799 -9.9125 2.1647 21 7 4.8920 -10.9650 2.6814 22 16 6.4294 -10.7311 2.6645 23 7 6.4863 -9.3160 2.0219 24 6 5.2553 -8.9022 1.7606 25 6 4.7872 -7.6989 1.1834 26 6 1.8144 -3.6455 0.1285 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1581 -1.4293 -1.5553 29 1 -1.2991 -3.5160 -2.1627 30 1 -0.4671 -5.6734 -1.3258 31 1 0.9976 -6.7532 0.4461 32 1 1.4472 -8.3019 1.2628 33 1 2.1642 -10.3855 2.2560 34 1 5.4875 -6.9361 0.8765 35 1 2.6818 -3.6839 0.7708 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521754350.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:58 Heat of formation + Delta-G solvation = 48.214147 kcal Electronic energy + Delta-G solvation = -22946.046422 eV Core-core repulsion = 19420.993674 eV Total energy + Delta-G solvation = -3525.052748 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.063 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.17499 -41.18138 -39.06979 -37.18959 -36.28040 -35.01931 -34.82706 -31.74013 -31.47893 -30.48965 -28.52408 -27.23540 -24.83847 -23.46294 -22.93942 -22.57250 -21.49969 -20.55467 -19.55789 -19.06397 -18.05832 -17.52664 -17.03241 -16.94888 -16.48613 -16.45051 -16.05879 -15.76522 -15.13825 -14.93573 -14.68766 -14.38943 -13.94327 -13.63703 -13.45981 -13.10561 -12.92753 -12.84608 -12.77543 -12.76258 -12.75004 -12.17126 -12.05473 -11.98283 -11.78739 -11.52073 -11.20707 -10.93530 -10.74900 -9.86854 -9.59719 -9.37687 -8.74758 -8.59665 -6.35563 -1.39261 -0.13375 0.29451 0.54145 0.68545 0.93851 1.03433 1.36845 1.49480 1.50039 1.76302 2.08755 2.21973 2.55286 2.76323 2.91988 3.52720 3.68771 3.76478 3.80495 3.93087 4.08924 4.49511 4.63729 4.67075 4.75918 4.99331 5.00905 5.07434 5.10799 5.13900 5.16099 5.25674 5.34931 5.66479 5.76220 5.87460 6.10144 6.12359 6.35235 6.58466 6.69920 6.94971 7.02221 7.23183 8.34193 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.022716 B = 0.002546 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.332842 B =10996.784338 C =11983.047293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.039 3.961 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.266 1.266 7 C -0.503 4.503 8 H 0.061 0.939 9 C 0.088 3.912 10 C -0.197 4.197 11 C -0.091 4.091 12 C -0.245 4.245 13 C 0.158 3.842 14 N -0.644 5.644 15 C 0.548 3.452 16 O -0.560 6.560 17 C -0.102 4.102 18 C -0.069 4.069 19 C -0.054 4.054 20 C 0.077 3.923 21 N -0.616 5.616 22 S 0.906 5.094 23 N -0.622 5.622 24 C 0.047 3.953 25 C -0.008 4.008 26 C -0.236 4.236 27 H 0.289 0.711 28 H 0.104 0.896 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.424 0.576 32 H 0.175 0.825 33 H 0.179 0.821 34 H 0.135 0.865 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.561 -21.934 5.230 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.176 4.176 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.190 1.190 7 C -0.533 4.533 8 H 0.080 0.920 9 C 0.085 3.915 10 C -0.217 4.217 11 C -0.110 4.110 12 C -0.265 4.265 13 C 0.065 3.935 14 N -0.291 5.291 15 C 0.337 3.663 16 O -0.439 6.439 17 C -0.112 4.112 18 C -0.093 4.093 19 C -0.079 4.079 20 C -0.079 4.079 21 N -0.469 5.469 22 S 0.951 5.049 23 N -0.477 5.477 24 C -0.107 4.107 25 C -0.035 4.035 26 C -0.257 4.257 27 H 0.100 0.900 28 H 0.122 0.878 29 H 0.143 0.857 30 H 0.155 0.845 31 H 0.264 0.736 32 H 0.193 0.807 33 H 0.196 0.804 34 H 0.153 0.847 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.603 -22.581 5.761 24.221 hybrid contribution -0.900 1.981 -0.459 2.224 sum 5.702 -20.599 5.302 22.022 Atomic orbital electron populations 1.69854 1.08623 1.30501 1.35743 1.26662 0.95599 1.04112 0.91260 0.85249 0.78925 0.76164 0.79615 1.18506 1.18574 1.19015 1.19737 0.97489 0.92744 1.43305 0.92029 1.17818 0.92000 0.92346 0.89296 1.21332 0.99956 0.97719 1.02644 1.20854 0.98930 0.92154 0.99080 1.20506 1.01285 0.98226 1.06529 1.17451 0.95761 0.83875 0.96455 1.43130 1.07159 1.14346 1.64438 1.18643 0.82385 0.86939 0.78294 1.90845 1.55832 1.46675 1.50513 1.19500 0.93789 0.94642 1.03284 1.20999 1.00733 0.91323 0.96212 1.20467 0.90251 0.98182 0.98950 1.21603 0.98162 0.88286 0.99806 1.72066 1.16094 1.31068 1.27703 1.78130 0.98093 0.99404 1.29256 1.72036 1.28305 1.22213 1.25128 1.21067 0.86600 0.98533 1.04535 1.20557 0.95050 0.93453 0.94394 1.20952 1.04610 0.92312 1.07875 0.90016 0.87832 0.85745 0.84450 0.73604 0.80732 0.80351 0.84710 0.89821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.76 10.94 21.83 0.24 -43.52 16 2 C 0.04 2.04 5.16 85.25 0.44 2.48 16 3 Si 0.98 40.32 29.59 68.60 2.03 42.35 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.50 -29.26 9.05 23.46 0.21 -29.05 16 8 H 0.06 3.62 7.90 -2.91 -0.02 3.60 16 9 C 0.09 5.05 5.57 -21.31 -0.12 4.93 16 10 C -0.20 -10.47 8.69 22.75 0.20 -10.28 16 11 C -0.09 -4.06 10.02 22.20 0.22 -3.84 16 12 C -0.24 -9.79 9.97 22.58 0.23 -9.57 16 13 C 0.16 6.85 6.25 38.12 0.24 7.08 16 14 N -0.64 -20.97 5.27 -306.42 -1.62 -22.58 16 15 C 0.55 19.25 7.48 86.73 0.65 19.90 16 16 O -0.56 -25.81 14.01 -3.98 -0.06 -25.87 16 17 C -0.10 -2.65 5.85 -20.23 -0.12 -2.77 16 18 C -0.07 -1.15 9.38 22.17 0.21 -0.94 16 19 C -0.05 -0.84 10.06 22.47 0.23 -0.61 16 20 C 0.08 1.59 7.16 42.05 0.30 1.89 16 21 N -0.62 -11.37 11.43 -72.61 -0.83 -12.20 16 22 S 0.91 12.68 23.60 -56.49 -1.33 11.35 16 23 N -0.62 -14.15 11.45 -72.84 -0.83 -14.99 16 24 C 0.05 1.18 7.15 41.88 0.30 1.47 16 25 C -0.01 -0.23 9.65 23.00 0.22 -0.01 16 26 C -0.24 -12.59 8.39 22.86 0.19 -12.40 16 27 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 28 H 0.10 5.74 6.17 -2.91 -0.02 5.72 16 29 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 30 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 31 H 0.42 9.15 6.78 -92.71 -0.63 8.53 16 32 H 0.18 1.65 6.30 -2.91 -0.02 1.64 16 33 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 34 H 0.14 4.21 7.57 -2.91 -0.02 4.19 16 35 H 0.08 4.74 6.48 -2.91 -0.02 4.72 16 Total: -1.00 -76.09 321.08 1.55 -74.54 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.55 Total: 22.63 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 3.40 Total: -31.70 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -3.04 Total: -93.30 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.06 Total: -25.87 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Atomic # 16 Polarization: 12.68 SS G_CDS: -1.33 Total: 11.35 kcal Total: -76.09 1.55 -74.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521754350.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.752 kcal (2) G-P(sol) polarization free energy of solvation -76.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds