Wall clock time and date at job start Tue Mar 31 2020 13:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86792 * 120.00183 * 2 1 4 4 H 1.48505 * 109.47543 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47409 * 300.00458 * 3 2 1 6 6 H 1.48512 * 109.47153 * 60.00458 * 3 2 1 7 7 C 1.38813 * 119.99639 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99876 * 179.97438 * 7 2 1 9 9 O 1.34848 * 120.00516 * 359.97438 * 7 2 1 10 10 C 1.34731 * 117.00275 * 179.97438 * 9 7 2 11 11 O 1.21502 * 120.00110 * 0.02562 * 10 9 7 12 12 C 1.47668 * 119.99802 * 179.97438 * 10 9 7 13 13 C 1.39687 * 120.15453 * 359.97438 * 12 10 9 14 14 C 1.37907 * 119.84296 * 180.02562 * 13 12 10 15 15 C 1.38394 * 120.15544 * 359.75117 * 14 13 12 16 16 C 1.38360 * 120.31018 * 0.50850 * 15 14 13 17 17 S 1.76199 * 119.92388 * 179.76503 * 16 15 14 18 18 O 1.42095 * 106.40227 * 156.18182 * 17 16 15 19 19 O 1.42107 * 106.40094 * 23.26599 * 17 16 15 20 20 N 1.65593 * 107.21807 * 269.72437 * 17 16 15 21 21 C 1.46506 * 120.00245 * 65.00204 * 20 17 16 22 22 C 1.52997 * 109.47289 * 165.00019 * 21 20 17 23 23 C 1.53002 * 117.49568 * 243.74464 * 22 21 20 24 24 C 1.52996 * 117.49807 * 175.08970 * 22 21 20 25 25 C 1.37950 * 120.15081 * 359.49062 * 16 15 14 26 26 H 0.96999 * 119.99991 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.07748 * 0.02562 * 13 12 10 28 28 H 1.08009 * 119.92302 * 180.02562 * 14 13 12 29 29 H 1.08000 * 119.84649 * 180.25414 * 15 14 13 30 30 H 0.97000 * 120.00411 * 244.99876 * 20 17 16 31 31 H 1.09001 * 109.47060 * 285.00288 * 21 20 17 32 32 H 1.09004 * 109.47073 * 44.99777 * 21 20 17 33 33 H 1.09000 * 115.55316 * 29.41268 * 22 21 20 34 34 H 1.08993 * 117.50063 * 0.02562 * 23 22 21 35 35 H 1.09009 * 117.49599 * 145.02171 * 23 22 21 36 36 H 1.09007 * 117.49761 * 214.97564 * 24 22 21 37 37 H 1.09006 * 117.49955 * 359.97438 * 24 22 21 38 38 H 1.08001 * 120.07901 * 180.23494 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8895 2.3964 1.2126 7 6 2.0081 -1.2022 -0.0005 8 1 3.0881 -1.2022 -0.0010 9 8 1.3339 -2.3700 -0.0005 10 6 2.0677 -3.5000 -0.0016 11 8 3.2810 -3.4365 -0.0021 12 6 1.3972 -4.8157 -0.0011 13 6 0.0025 -4.8925 0.0010 14 6 -0.6170 -6.1246 0.0020 15 6 0.1398 -7.2833 -0.0043 16 6 1.5217 -7.2147 -0.0010 17 16 2.4753 -8.6963 -0.0029 18 8 3.7423 -8.3574 -0.5496 19 8 1.6405 -9.7101 -0.5459 20 7 2.7435 -9.1086 1.5784 21 6 1.6183 -9.4827 2.4388 22 6 2.1470 -10.1652 3.7019 23 6 1.7626 -11.6289 3.9276 24 6 1.1308 -10.5301 4.7858 25 6 2.1546 -5.9889 -0.0021 26 1 -0.4850 0.8400 0.0004 27 1 -0.5894 -3.9891 0.0019 28 1 -1.6954 -6.1855 0.0032 29 1 -0.3505 -8.2455 -0.0076 30 1 3.6455 -9.1025 1.9350 31 1 1.0597 -8.5886 2.7157 32 1 0.9629 -10.1688 1.9022 33 1 3.1383 -9.8493 4.0272 34 1 1.1334 -12.1056 3.1761 35 1 2.5008 -12.2758 4.4017 36 1 1.4536 -10.4546 5.8243 37 1 0.0855 -10.2836 4.5993 38 1 3.2334 -5.9368 -0.0033 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031427568.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:35 Heat of formation + Delta-G solvation = -127.202679 kcal Electronic energy + Delta-G solvation = -24548.650907 eV Core-core repulsion = 20676.389844 eV Total energy + Delta-G solvation = -3872.261063 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.40009 -39.84002 -38.78733 -38.34452 -37.34074 -37.04807 -35.17750 -34.42829 -32.72662 -32.32129 -27.84970 -27.34802 -25.30889 -24.35844 -23.16129 -22.24347 -21.89622 -20.58736 -19.97712 -19.56125 -18.47039 -17.95351 -17.64621 -17.15697 -16.70961 -16.64180 -16.59548 -16.28845 -15.86242 -15.39314 -15.07678 -14.92967 -14.65099 -14.60374 -14.14512 -13.72225 -13.45904 -13.37966 -13.29672 -13.22532 -13.21902 -12.80435 -12.48539 -12.33159 -12.26780 -12.23216 -12.10847 -11.97254 -11.32057 -11.25290 -11.14465 -10.78000 -10.60371 -10.35705 -10.23528 -8.63931 -6.40739 -0.75917 -0.49690 -0.17451 1.29514 1.31848 1.50065 1.57882 1.93461 2.03738 2.42625 2.54771 2.67256 2.93644 2.95537 3.25656 3.68533 3.74405 3.85809 3.95167 4.02665 4.09699 4.10995 4.26333 4.29386 4.45470 4.64524 4.67161 4.78360 4.86862 4.88246 4.96355 5.06831 5.11155 5.15903 5.18347 5.33298 5.34327 5.62291 5.72869 6.02977 6.49451 6.80752 7.60308 8.56439 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019178 B = 0.002839 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.633194 B = 9861.633668 C =10123.317514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.001 3.999 3 Si 1.019 2.981 4 H -0.267 1.267 5 H -0.258 1.258 6 H -0.256 1.256 7 C -0.422 4.422 8 H 0.082 0.918 9 O -0.226 6.226 10 C 0.428 3.572 11 O -0.581 6.581 12 C -0.140 4.140 13 C -0.023 4.023 14 C -0.131 4.131 15 C 0.006 3.994 16 C -0.688 4.688 17 S 2.727 3.273 18 O -0.990 6.990 19 O -0.965 6.965 20 N -1.103 6.103 21 C 0.136 3.864 22 C -0.172 4.172 23 C -0.180 4.180 24 C -0.171 4.171 25 C 0.021 3.979 26 H 0.283 0.717 27 H 0.137 0.863 28 H 0.183 0.817 29 H 0.184 0.816 30 H 0.428 0.572 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.475 -21.372 8.019 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.201 4.201 3 Si 0.838 3.162 4 H -0.191 1.191 5 H -0.182 1.182 6 H -0.180 1.180 7 C -0.497 4.497 8 H 0.100 0.900 9 O -0.134 6.134 10 C 0.278 3.722 11 O -0.481 6.481 12 C -0.142 4.142 13 C -0.042 4.042 14 C -0.149 4.149 15 C -0.013 4.013 16 C -0.774 4.774 17 S 2.815 3.185 18 O -0.980 6.980 19 O -0.955 6.955 20 N -0.867 5.867 21 C 0.011 3.989 22 C -0.192 4.192 23 C -0.217 4.217 24 C -0.208 4.208 25 C 0.001 3.999 26 H 0.092 0.908 27 H 0.155 0.845 28 H 0.200 0.800 29 H 0.201 0.799 30 H 0.265 0.735 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.133 0.867 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.285 -21.633 7.207 23.037 hybrid contribution 0.777 1.805 0.329 1.992 sum -2.509 -19.828 7.536 21.360 Atomic orbital electron populations 1.70031 1.07547 1.29732 1.45540 1.26564 0.96974 1.02178 0.94341 0.84553 0.77720 0.74475 0.79501 1.19068 1.18208 1.18009 1.21547 0.92357 0.80903 1.54883 0.90043 1.83885 1.39743 1.13850 1.75923 1.21680 0.85922 0.86564 0.78083 1.90597 1.16499 1.88447 1.52547 1.19363 0.95357 0.89715 1.09780 1.21999 0.92450 1.00678 0.89055 1.21701 1.02746 0.90078 1.00370 1.21624 0.90622 1.01349 0.87679 1.31006 1.08883 1.17304 1.20160 1.00868 0.72293 0.72719 0.72635 1.93575 1.42187 1.84987 1.77239 1.93559 1.69827 1.55155 1.76978 1.55259 1.17167 1.83963 1.30279 1.21162 0.87301 1.00178 0.90279 1.22426 1.01082 0.98842 0.96832 1.23210 1.03928 0.91108 1.03485 1.23093 0.98714 1.02636 0.96389 1.20846 1.00337 0.90019 0.88679 0.90789 0.84531 0.79984 0.79856 0.73454 0.90161 0.89011 0.86690 0.88064 0.88139 0.87943 0.87643 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.26 13.67 21.63 0.30 -50.96 16 2 C 0.00 0.06 5.49 84.89 0.47 0.52 16 3 Si 1.02 42.93 29.55 68.60 2.03 44.96 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 6 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 7 C -0.42 -25.78 9.65 67.96 0.66 -25.13 16 8 H 0.08 5.11 6.86 -2.91 -0.02 5.09 16 9 O -0.23 -13.49 8.99 11.42 0.10 -13.39 16 10 C 0.43 23.03 7.84 70.31 0.55 23.58 16 11 O -0.58 -34.08 15.59 19.83 0.31 -33.77 16 12 C -0.14 -5.79 5.87 -20.10 -0.12 -5.91 16 13 C -0.02 -0.78 9.62 22.54 0.22 -0.56 16 14 C -0.13 -2.96 10.03 22.23 0.22 -2.74 16 15 C 0.01 0.13 9.52 22.34 0.21 0.34 16 16 C -0.69 -18.19 5.94 22.23 0.13 -18.06 16 17 S 2.73 63.64 5.74 -56.49 -0.32 63.32 16 18 O -0.99 -31.06 17.27 -128.00 -2.21 -33.27 16 19 O -0.97 -24.07 16.74 -128.00 -2.14 -26.21 16 20 N -1.10 -17.82 6.00 -187.48 -1.12 -18.94 16 21 C 0.14 1.73 6.50 86.38 0.56 2.30 16 22 C -0.17 -1.91 5.90 -10.80 -0.06 -1.97 16 23 C -0.18 -1.77 10.18 30.62 0.31 -1.46 16 24 C -0.17 -1.59 10.25 30.61 0.31 -1.28 16 25 C 0.02 0.74 9.07 22.54 0.20 0.95 16 26 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 27 H 0.14 4.94 7.61 -2.91 -0.02 4.92 16 28 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 29 H 0.18 2.34 7.60 -2.91 -0.02 2.32 16 30 H 0.43 5.68 8.54 -96.75 -0.83 4.86 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 1.02 7.48 -2.38 -0.02 1.00 16 33 H 0.12 1.20 7.98 -2.39 -0.02 1.18 16 34 H 0.10 0.94 8.03 -2.39 -0.02 0.92 16 35 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.14 5.13 7.20 -2.91 -0.02 5.11 16 Total: -1.00 -82.61 350.99 0.88 -81.72 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.28 Total: 15.95 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 3.67 Total: -29.42 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -0.83 Total: -69.90 kcal Atomic # 8 Polarization: -102.69 SS G_CDS: -3.94 Total: -106.63 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 63.64 SS G_CDS: -0.32 Total: 63.32 kcal Total: -82.61 0.88 -81.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031427568.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.478 kcal (2) G-P(sol) polarization free energy of solvation -82.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds