Wall clock time and date at job start Tue Mar 31 2020 14:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45205 * 109.47414 * 2 1 4 4 C 1.34648 * 117.00408 * 180.02562 * 3 2 1 5 5 O 1.21511 * 119.99606 * 359.97438 * 4 3 2 6 6 N 1.34768 * 120.00041 * 180.02562 * 4 3 2 7 7 C 1.39950 * 119.99910 * 175.83302 * 6 4 3 8 8 C 1.38926 * 120.04316 * 215.18221 * 7 6 4 9 9 C 1.38119 * 120.04268 * 180.02562 * 8 7 6 10 10 C 1.38217 * 120.12312 * 359.69976 * 9 8 7 11 11 C 1.38756 * 120.08459 * 0.55297 * 10 9 8 12 12 O 1.35924 * 120.02293 * 179.74903 * 11 10 9 13 13 C 1.34267 * 116.99729 * 245.78664 * 12 11 10 14 14 O 1.20829 * 119.99993 * 5.20183 * 13 12 11 15 15 C 1.50695 * 119.99784 * 185.20429 * 13 12 11 16 16 S 1.81007 * 109.47168 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00029 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00016 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99843 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99904 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99809 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47328 * 59.99744 * 21 19 17 23 23 H 1.48501 * 109.47047 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47106 * 299.99749 * 21 19 17 25 25 C 1.38631 * 119.95527 * 359.47172 * 11 10 9 26 26 H 1.08997 * 109.47613 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47033 * 299.99952 * 1 2 3 28 28 H 1.09001 * 109.47206 * 59.99680 * 1 2 3 29 29 H 1.09000 * 109.46909 * 240.00537 * 2 1 3 30 30 H 1.08991 * 109.47341 * 120.00304 * 2 1 3 31 31 H 0.96999 * 120.00454 * 355.82945 * 6 4 3 32 32 H 1.08003 * 119.97468 * 0.02562 * 8 7 6 33 33 H 1.07997 * 119.93991 * 179.97438 * 9 8 7 34 34 H 1.08002 * 119.95857 * 180.30065 * 10 9 8 35 35 H 1.08994 * 109.47481 * 299.99645 * 15 13 12 36 36 H 1.08998 * 109.47334 * 60.00104 * 15 13 12 37 37 H 0.97002 * 119.99940 * 180.02562 * 20 19 17 38 38 H 1.08004 * 120.05946 * 180.22850 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3489 1.5454 -0.0005 5 8 4.0891 0.5818 -0.0005 6 7 3.8640 2.7908 0.0000 7 6 5.2485 2.9753 0.0875 8 6 5.7628 4.0599 0.7870 9 6 7.1292 4.2423 0.8729 10 6 7.9883 3.3436 0.2689 11 6 7.4802 2.2615 -0.4355 12 8 8.3261 1.3814 -1.0333 13 6 8.3035 1.3295 -2.3748 14 8 7.6236 2.1099 -2.9982 15 6 9.1261 0.2979 -3.1028 16 16 8.8838 0.4827 -4.8871 17 6 9.9290 -0.8092 -5.4731 18 1 10.4746 -1.4227 -4.7714 19 6 10.0520 -1.0376 -6.8367 20 7 9.3875 -0.2896 -7.6919 21 14 11.1595 -2.4076 -7.4579 22 1 10.6890 -3.7082 -6.9172 23 1 11.1166 -2.4444 -8.9419 24 1 12.5531 -2.1598 -7.0086 25 6 6.1093 2.0754 -0.5243 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.2752 3.5593 -0.0604 32 1 5.0937 4.7607 1.2639 33 1 7.5272 5.0861 1.4168 34 1 9.0564 3.4862 0.3419 35 1 10.1799 0.4379 -2.8626 36 1 8.8127 -0.6997 -2.7954 37 1 9.4731 -0.4495 -8.6448 38 1 5.7121 1.2317 -1.0691 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042023372.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:19 Heat of formation + Delta-G solvation = -124.184484 kcal Electronic energy + Delta-G solvation = -24011.771425 eV Core-core repulsion = 20139.641241 eV Total energy + Delta-G solvation = -3872.130185 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.35081 -40.76075 -38.94185 -37.13556 -36.40252 -34.94139 -32.49123 -32.05543 -30.85072 -29.87225 -29.16052 -25.57878 -24.43301 -23.62092 -22.80835 -21.44796 -21.01369 -19.19312 -18.28316 -17.91768 -17.15562 -17.00981 -16.60196 -16.33213 -16.09197 -15.64192 -14.89944 -14.84981 -14.43407 -14.23545 -14.04222 -13.83158 -13.32582 -13.10310 -12.86886 -12.75603 -12.66106 -12.30497 -12.03830 -11.96675 -11.87719 -11.23497 -11.11415 -11.06082 -10.85590 -10.84250 -10.65315 -10.53628 -10.09638 -9.93364 -9.11194 -8.85949 -8.42731 -8.37598 -6.61834 -6.27715 -4.00874 0.92201 1.15016 1.74984 2.46121 2.54714 2.66689 3.22173 3.23089 3.27191 3.43694 3.72878 3.76933 4.14324 4.61570 4.63653 4.70751 4.79474 4.93127 4.96561 5.05314 5.08109 5.13818 5.29214 5.33058 5.42045 5.43379 5.59116 5.74183 5.75236 5.95149 6.03260 6.05135 6.11562 6.17289 6.29495 6.56149 6.90788 6.97915 7.54798 7.95225 8.15528 8.29749 9.17584 10.79751 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.002846 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.921834 B = 9834.995038 C =11536.755108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.080 3.920 3 O -0.368 6.368 4 C 0.648 3.352 5 O -0.548 6.548 6 N -0.648 5.648 7 C 0.169 3.831 8 C -0.144 4.144 9 C -0.086 4.086 10 C -0.131 4.131 11 C 0.114 3.886 12 O -0.297 6.297 13 C 0.477 3.523 14 O -0.468 6.468 15 C -0.127 4.127 16 S -0.056 6.056 17 C -0.537 4.537 18 H 0.077 0.923 19 C 0.075 3.925 20 N -0.868 5.868 21 Si 0.922 3.078 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.273 1.273 25 C -0.124 4.124 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.419 0.581 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.270 0.730 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.263 6.918 19.777 24.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.006 3.994 3 O -0.282 6.282 4 C 0.402 3.598 5 O -0.435 6.435 6 N -0.300 5.300 7 C 0.076 3.924 8 C -0.165 4.165 9 C -0.104 4.104 10 C -0.150 4.150 11 C 0.071 3.929 12 O -0.213 6.213 13 C 0.319 3.681 14 O -0.350 6.350 15 C -0.274 4.274 16 S 0.171 5.829 17 C -0.685 4.685 18 H 0.095 0.905 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.748 3.252 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.198 1.198 25 C -0.145 4.145 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.256 0.744 32 H 0.150 0.850 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.080 0.920 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.941 7.381 18.803 24.543 hybrid contribution 1.086 -1.486 0.227 1.854 sum -12.855 5.895 19.030 23.709 Atomic orbital electron populations 1.21836 0.92289 1.03295 1.03563 1.23062 0.94947 0.78092 1.03315 1.86222 1.21305 1.33979 1.86722 1.18040 0.81548 0.83968 0.76239 1.91058 1.59425 1.39450 1.53565 1.41847 1.05932 1.06576 1.75675 1.17139 0.80550 0.96839 0.97874 1.20871 0.96061 0.98957 1.00592 1.20745 0.92010 0.98684 0.99009 1.21121 1.01145 0.92503 1.00254 1.18373 0.88185 0.90342 0.95958 1.84669 1.57564 1.55939 1.23120 1.23755 0.80842 0.84223 0.79305 1.90699 1.38869 1.38957 1.66476 1.23329 1.01829 0.98567 1.03723 1.85441 1.62228 1.46530 0.88733 1.22804 1.31732 1.19271 0.94676 0.90534 1.25005 0.95984 0.96933 0.95564 1.70001 1.39648 1.37856 1.02751 0.86165 0.80313 0.81063 0.77638 1.19815 1.20774 1.19801 1.21448 0.91983 1.01147 0.99909 0.89752 0.91488 0.91310 0.90627 0.90875 0.74436 0.85016 0.84474 0.84666 0.87527 0.87539 0.91993 0.83522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.29 37.16 0.38 -0.50 16 2 C 0.08 0.71 6.19 37.16 0.23 0.94 16 3 O -0.37 -3.96 10.27 -40.35 -0.41 -4.37 16 4 C 0.65 8.48 8.59 54.05 0.46 8.94 16 5 O -0.55 -9.07 13.59 -19.28 -0.26 -9.33 16 6 N -0.65 -7.09 5.34 -14.28 -0.08 -7.17 16 7 C 0.17 2.17 6.29 -83.71 -0.53 1.64 16 8 C -0.14 -1.42 9.96 -39.37 -0.39 -1.81 16 9 C -0.09 -0.85 10.03 -39.63 -0.40 -1.24 16 10 C -0.13 -1.66 9.98 -39.40 -0.39 -2.05 16 11 C 0.11 1.85 5.36 -39.24 -0.21 1.63 16 12 O -0.30 -5.28 10.05 -23.62 -0.24 -5.52 16 13 C 0.48 9.68 7.73 36.00 0.28 9.96 16 14 O -0.47 -10.71 15.15 -18.75 -0.28 -10.99 16 15 C -0.13 -2.65 6.27 36.00 0.23 -2.42 16 16 S -0.06 -1.50 20.58 -107.50 -2.21 -3.71 16 17 C -0.54 -15.14 9.50 30.94 0.29 -14.84 16 18 H 0.08 2.03 7.80 -52.48 -0.41 1.62 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 21 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 C -0.12 -2.03 7.78 -39.25 -0.31 -2.33 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.42 3.05 8.93 -40.82 -0.36 2.69 16 32 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.11 2.02 8.14 -51.92 -0.42 1.60 16 36 H 0.11 2.07 8.14 -51.92 -0.42 1.65 16 37 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.15 2.76 6.25 -52.48 -0.33 2.43 16 LS Contribution 354.99 15.07 5.35 5.35 Total: -1.00 -35.45 354.99 -7.34 -42.79 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -4.46 Total: 1.95 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -0.45 Total: -0.08 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.66 Total: -32.31 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -1.20 Total: -30.21 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.45 -7.34 -42.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042023372.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.396 kcal (2) G-P(sol) polarization free energy of solvation -35.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds