Wall clock time and date at job start Tue Mar 31 2020 14:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45205 * 109.47414 * 2 1 4 4 C 1.34648 * 117.00408 * 180.02562 * 3 2 1 5 5 O 1.21511 * 119.99606 * 359.97438 * 4 3 2 6 6 N 1.34768 * 120.00041 * 180.02562 * 4 3 2 7 7 C 1.39950 * 119.99910 * 175.83302 * 6 4 3 8 8 C 1.38926 * 120.04316 * 215.18221 * 7 6 4 9 9 C 1.38119 * 120.04268 * 180.02562 * 8 7 6 10 10 C 1.38217 * 120.12312 * 359.69976 * 9 8 7 11 11 C 1.38756 * 120.08459 * 0.55297 * 10 9 8 12 12 O 1.35924 * 120.02293 * 179.74903 * 11 10 9 13 13 C 1.34267 * 116.99729 * 245.78664 * 12 11 10 14 14 O 1.20829 * 119.99993 * 5.20183 * 13 12 11 15 15 C 1.50695 * 119.99784 * 185.20429 * 13 12 11 16 16 S 1.81007 * 109.47168 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00029 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00016 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99843 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99904 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99809 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47328 * 59.99744 * 21 19 17 23 23 H 1.48501 * 109.47047 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47106 * 299.99749 * 21 19 17 25 25 C 1.38631 * 119.95527 * 359.47172 * 11 10 9 26 26 H 1.08997 * 109.47613 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47033 * 299.99952 * 1 2 3 28 28 H 1.09001 * 109.47206 * 59.99680 * 1 2 3 29 29 H 1.09000 * 109.46909 * 240.00537 * 2 1 3 30 30 H 1.08991 * 109.47341 * 120.00304 * 2 1 3 31 31 H 0.96999 * 120.00454 * 355.82945 * 6 4 3 32 32 H 1.08003 * 119.97468 * 0.02562 * 8 7 6 33 33 H 1.07997 * 119.93991 * 179.97438 * 9 8 7 34 34 H 1.08002 * 119.95857 * 180.30065 * 10 9 8 35 35 H 1.08994 * 109.47481 * 299.99645 * 15 13 12 36 36 H 1.08998 * 109.47334 * 60.00104 * 15 13 12 37 37 H 0.97002 * 119.99940 * 180.02562 * 20 19 17 38 38 H 1.08004 * 120.05946 * 180.22850 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3489 1.5454 -0.0005 5 8 4.0891 0.5818 -0.0005 6 7 3.8640 2.7908 0.0000 7 6 5.2485 2.9753 0.0875 8 6 5.7628 4.0599 0.7870 9 6 7.1292 4.2423 0.8729 10 6 7.9883 3.3436 0.2689 11 6 7.4802 2.2615 -0.4355 12 8 8.3261 1.3814 -1.0333 13 6 8.3035 1.3295 -2.3748 14 8 7.6236 2.1099 -2.9982 15 6 9.1261 0.2979 -3.1028 16 16 8.8838 0.4827 -4.8871 17 6 9.9290 -0.8092 -5.4731 18 1 10.4746 -1.4227 -4.7714 19 6 10.0520 -1.0376 -6.8367 20 7 9.3875 -0.2896 -7.6919 21 14 11.1595 -2.4076 -7.4579 22 1 10.6890 -3.7082 -6.9172 23 1 11.1166 -2.4444 -8.9419 24 1 12.5531 -2.1598 -7.0086 25 6 6.1093 2.0754 -0.5243 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.2752 3.5593 -0.0604 32 1 5.0937 4.7607 1.2639 33 1 7.5272 5.0861 1.4168 34 1 9.0564 3.4862 0.3419 35 1 10.1799 0.4379 -2.8626 36 1 8.8127 -0.6997 -2.7954 37 1 9.4731 -0.4495 -8.6448 38 1 5.7121 1.2317 -1.0691 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042023372.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:19 Heat of formation + Delta-G solvation = -147.603214 kcal Electronic energy + Delta-G solvation = -24012.786938 eV Core-core repulsion = 20139.641241 eV Total energy + Delta-G solvation = -3873.145697 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.56663 -41.92681 -40.00803 -38.35049 -37.62573 -35.98093 -34.63754 -32.72237 -32.14996 -31.03823 -30.37581 -27.74519 -25.34197 -24.78557 -23.62783 -22.47011 -22.26211 -20.29007 -19.92250 -19.44242 -18.37682 -18.04323 -17.78642 -17.60330 -17.25690 -16.91858 -16.76843 -16.09992 -16.03456 -15.39147 -14.99138 -14.85962 -14.70406 -14.56588 -14.16458 -13.85329 -13.61627 -13.33951 -13.23300 -13.06877 -12.88901 -12.82677 -12.70825 -12.61734 -12.45462 -11.91827 -11.83471 -11.75964 -11.60047 -11.46111 -11.16755 -10.44645 -9.90710 -9.38757 -8.78334 -8.39726 -6.20664 -0.11923 0.13244 0.86328 0.95420 1.00858 1.39437 1.43890 1.48072 1.53226 1.83237 2.21565 2.66371 2.92896 2.95314 3.22757 3.63962 3.80634 3.95710 4.01116 4.04722 4.05319 4.08716 4.23879 4.31082 4.35073 4.37692 4.61171 4.70241 4.88773 5.00236 5.08788 5.11150 5.18969 5.26905 5.35043 5.36785 5.38537 5.81642 6.08850 6.15614 6.63987 7.01528 7.01942 8.69468 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.002846 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.921834 B = 9834.995038 C =11536.755108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.071 3.929 3 O -0.361 6.361 4 C 0.643 3.357 5 O -0.590 6.590 6 N -0.634 5.634 7 C 0.157 3.843 8 C -0.121 4.121 9 C -0.072 4.072 10 C -0.132 4.132 11 C 0.069 3.931 12 O -0.290 6.290 13 C 0.483 3.517 14 O -0.501 6.501 15 C -0.106 4.106 16 S -0.133 6.133 17 C -0.550 4.550 18 H 0.087 0.913 19 C 0.016 3.984 20 N -0.910 5.910 21 Si 1.001 2.999 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.260 1.260 25 C -0.153 4.153 26 H 0.103 0.897 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.437 0.563 32 H 0.180 0.820 33 H 0.186 0.814 34 H 0.153 0.847 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.273 0.727 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.111 8.037 22.052 26.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.003 4.003 3 O -0.275 6.275 4 C 0.398 3.602 5 O -0.480 6.480 6 N -0.288 5.288 7 C 0.063 3.937 8 C -0.141 4.141 9 C -0.090 4.090 10 C -0.151 4.151 11 C 0.027 3.973 12 O -0.206 6.206 13 C 0.326 3.674 14 O -0.386 6.386 15 C -0.254 4.254 16 S 0.094 5.906 17 C -0.698 4.698 18 H 0.105 0.895 19 C -0.189 4.189 20 N -0.546 5.546 21 Si 0.823 3.177 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.184 1.184 25 C -0.174 4.174 26 H 0.121 0.879 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.278 0.722 32 H 0.197 0.803 33 H 0.203 0.797 34 H 0.171 0.829 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.082 0.918 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.818 8.529 21.111 26.634 hybrid contribution 0.934 -1.730 -0.300 1.989 sum -12.884 6.798 20.812 25.403 Atomic orbital electron populations 1.21848 0.89481 1.04705 1.04031 1.23340 0.97035 0.77246 1.02718 1.86253 1.19832 1.35083 1.86286 1.18320 0.81984 0.84164 0.75770 1.91039 1.60498 1.40993 1.55461 1.41753 1.05694 1.06545 1.74774 1.17385 0.80833 0.97191 0.98263 1.21427 0.96986 0.97614 0.98068 1.21350 0.91574 0.98646 0.97387 1.21478 1.02741 0.91468 0.99389 1.18811 0.88061 0.92253 0.98183 1.84624 1.57817 1.56798 1.21315 1.23535 0.80022 0.83452 0.80361 1.90673 1.40184 1.40271 1.67496 1.23116 1.03457 0.99651 0.99214 1.85550 1.63112 1.47388 0.94579 1.23166 1.31776 1.19377 0.95447 0.89480 1.26144 0.97460 0.99625 0.95659 1.70159 1.41392 1.39884 1.03168 0.84961 0.78292 0.77440 0.77053 1.18749 1.20217 1.18447 1.21313 0.92939 1.01535 1.01636 0.87851 0.90511 0.91254 0.92002 0.90877 0.72227 0.80310 0.79664 0.82930 0.85178 0.86102 0.91767 0.87431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 10.29 71.98 0.74 -0.76 16 2 C 0.07 1.28 6.19 71.98 0.45 1.72 16 3 O -0.36 -7.79 10.27 -55.57 -0.57 -8.36 16 4 C 0.64 17.30 8.59 129.79 1.11 18.42 16 5 O -0.59 -20.86 13.59 19.80 0.27 -20.59 16 6 N -0.63 -13.43 5.34 -429.52 -2.29 -15.72 16 7 C 0.16 3.88 6.29 38.13 0.24 4.12 16 8 C -0.12 -1.91 9.96 22.41 0.22 -1.69 16 9 C -0.07 -1.10 10.03 22.24 0.22 -0.88 16 10 C -0.13 -3.08 9.98 22.39 0.22 -2.85 16 11 C 0.07 2.26 5.36 22.49 0.12 2.38 16 12 O -0.29 -10.65 10.05 4.51 0.05 -10.60 16 13 C 0.48 20.37 7.73 71.23 0.55 20.92 16 14 O -0.50 -24.14 15.15 21.95 0.33 -23.81 16 15 C -0.11 -4.53 6.27 71.23 0.45 -4.09 16 16 S -0.13 -7.45 20.58 -56.49 -1.16 -8.61 16 17 C -0.55 -31.45 9.50 67.95 0.65 -30.81 16 18 H 0.09 4.62 7.80 -2.91 -0.02 4.59 16 19 C 0.02 0.93 5.49 84.86 0.47 1.39 16 20 N -0.91 -55.56 13.22 21.65 0.29 -55.27 16 21 Si 1.00 43.52 29.55 68.60 2.03 45.55 16 22 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 25 C -0.15 -5.22 7.78 22.49 0.17 -5.05 16 26 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.44 5.55 8.93 -92.71 -0.83 4.73 16 32 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.19 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.13 4.91 8.14 -2.40 -0.02 4.89 16 36 H 0.12 4.79 8.14 -2.40 -0.02 4.77 16 37 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 38 H 0.11 4.46 6.25 -2.91 -0.02 4.44 16 Total: -1.00 -82.68 354.99 4.82 -77.86 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.27 Total: 16.74 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 5.62 Total: 2.83 kcal Atomic # 7 Polarization: -68.98 SS G_CDS: -2.01 Total: -70.99 kcal Atomic # 8 Polarization: -63.45 SS G_CDS: 0.08 Total: -63.37 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -7.45 SS G_CDS: -1.16 Total: -8.61 kcal Total: -82.68 4.82 -77.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042023372.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.743 kcal (2) G-P(sol) polarization free energy of solvation -82.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds