Wall clock time and date at job start Tue Mar 31 2020 14:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47065 * 2 1 4 4 C 1.52995 * 109.47335 * 120.00524 * 2 1 3 5 5 N 1.46901 * 109.47452 * 58.93676 * 4 2 1 6 6 C 1.46897 * 110.99578 * 78.39094 * 5 4 2 7 7 C 1.50697 * 109.47506 * 282.65299 * 6 5 4 8 8 H 1.08003 * 119.99320 * 354.38868 * 7 6 5 9 9 C 1.37874 * 120.00184 * 174.39009 * 7 6 5 10 10 N 1.31517 * 119.99866 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00187 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47332 * 89.99767 * 11 9 7 13 13 H 1.48497 * 109.47336 * 210.00245 * 11 9 7 14 14 H 1.48503 * 109.47151 * 330.00079 * 11 9 7 15 15 C 1.46904 * 110.99857 * 202.34760 * 5 4 2 16 16 C 1.50698 * 109.47327 * 71.99928 * 15 5 4 17 17 C 1.38240 * 120.00324 * 251.89756 * 16 15 5 18 18 C 1.38216 * 120.00997 * 179.97438 * 17 16 15 19 19 C 1.38261 * 120.02255 * 0.02562 * 18 17 16 20 20 C 1.38196 * 120.00641 * 359.97393 * 19 18 17 21 21 C 1.38301 * 120.00902 * 71.61681 * 16 15 5 22 22 Br 1.89110 * 120.00625 * 0.02939 * 21 16 15 23 23 H 1.09001 * 109.47232 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46970 * 299.99540 * 1 2 3 25 25 H 1.08999 * 109.47411 * 59.99898 * 1 2 3 26 26 H 1.08998 * 109.46970 * 240.00459 * 2 1 3 27 27 H 1.09000 * 109.47008 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47089 * 300.00299 * 3 2 1 29 29 H 1.08998 * 109.46851 * 60.00386 * 3 2 1 30 30 H 1.09009 * 109.47093 * 298.93815 * 4 2 1 31 31 H 1.08998 * 109.47214 * 178.94078 * 4 2 1 32 32 H 1.08999 * 109.47352 * 42.65792 * 6 5 4 33 33 H 1.09004 * 109.46568 * 162.65233 * 6 5 4 34 34 H 0.96996 * 120.00184 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.46269 * 191.99524 * 15 5 4 36 36 H 1.08992 * 109.46904 * 311.99017 * 15 5 4 37 37 H 1.08001 * 119.99485 * 359.97438 * 17 16 15 38 38 H 1.08005 * 119.98699 * 179.97438 * 18 17 16 39 39 H 1.07996 * 119.99425 * 179.97438 * 19 18 17 40 40 H 1.08010 * 120.00311 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.5296 -2.0987 1.2620 6 6 2.3001 -2.9542 0.3496 7 6 1.8698 -2.6901 -1.0703 8 1 1.0399 -2.0279 -1.2687 9 6 2.5355 -3.2937 -2.1159 10 7 2.1602 -3.0628 -3.3551 11 14 3.9702 -4.4395 -1.7727 12 1 3.4683 -5.8284 -1.6167 13 1 4.9298 -4.3841 -2.9046 14 1 4.6533 -4.0170 -0.5236 15 6 1.5299 -2.6475 2.6247 16 6 0.4394 -1.9907 3.4311 17 6 0.7637 -1.0838 4.4227 18 6 -0.2364 -0.4809 5.1621 19 6 -1.5616 -0.7848 4.9106 20 6 -1.8867 -1.6912 3.9195 21 6 -0.8863 -2.2906 3.1753 22 35 -1.3308 -3.5258 1.8141 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6923 -0.1967 2.1391 31 1 3.1299 -0.7378 1.2396 32 1 3.3623 -2.7332 0.4545 33 1 2.1208 -4.0010 0.5949 34 1 2.6287 -3.4872 -4.0908 35 1 1.3539 -3.7225 2.5833 36 1 2.4948 -2.4551 3.0936 37 1 1.7987 -0.8464 4.6198 38 1 0.0174 0.2273 5.9371 39 1 -2.3426 -0.3137 5.4889 40 1 -2.9219 -1.9283 3.7228 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049800832.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:54 Heat of formation + Delta-G solvation = 27.483069 kcal Electronic energy + Delta-G solvation = -20611.123233 eV Core-core repulsion = 17664.931550 eV Total energy + Delta-G solvation = -2946.191684 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.41476 -37.27915 -33.91922 -32.65276 -31.98919 -31.17469 -28.97588 -27.70740 -26.35883 -26.08294 -23.63638 -22.34191 -21.16980 -20.36564 -19.02501 -16.87062 -16.37882 -15.55303 -15.10462 -14.90874 -14.41715 -14.16037 -13.62702 -13.33309 -13.22669 -12.87087 -12.64396 -12.53602 -12.29856 -11.77577 -11.59752 -11.34807 -11.16901 -11.11556 -10.98661 -10.51077 -10.46228 -10.31723 -10.10458 -9.95470 -9.86490 -9.62828 -9.49573 -8.97681 -8.76949 -8.45059 -8.37620 -7.26827 -5.97548 -3.91699 1.26079 1.37700 2.11664 3.31050 3.38683 3.40369 3.71238 4.47297 4.75338 4.89521 4.94267 5.07180 5.31936 5.33766 5.47825 5.63586 5.71691 5.77863 5.82794 5.94064 6.04764 6.11719 6.14044 6.30247 6.31595 6.36876 6.44884 6.53943 6.56631 6.63700 6.77718 6.83313 6.90591 6.93801 7.05693 7.38788 7.52254 7.72864 7.97352 8.11964 8.74659 9.16605 9.64905 11.14543 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.014596 B = 0.006079 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.928154 B = 4605.155092 C = 5352.534217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C -0.142 4.142 4 C 0.076 3.924 5 N -0.508 5.508 6 C 0.161 3.839 7 C -0.497 4.497 8 H 0.097 0.903 9 C 0.068 3.932 10 N -0.901 5.901 11 Si 0.865 3.135 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.269 1.269 15 C 0.081 3.919 16 C -0.038 4.038 17 C -0.114 4.114 18 C -0.112 4.112 19 C -0.124 4.124 20 C -0.098 4.098 21 C -0.065 4.065 22 Br -0.026 7.026 23 H 0.078 0.922 24 H 0.027 0.973 25 H 0.033 0.967 26 H 0.116 0.884 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.022 0.978 32 H -0.009 1.009 33 H 0.020 0.980 34 H 0.261 0.739 35 H 0.085 0.915 36 H 0.033 0.967 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.999 3.766 16.232 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.122 4.122 3 C -0.200 4.200 4 C -0.052 4.052 5 N -0.231 5.231 6 C 0.035 3.965 7 C -0.535 4.535 8 H 0.115 0.885 9 C -0.133 4.133 10 N -0.540 5.540 11 Si 0.693 3.307 12 H -0.204 1.204 13 H -0.215 1.215 14 H -0.194 1.194 15 C -0.047 4.047 16 C -0.041 4.041 17 C -0.134 4.134 18 C -0.131 4.131 19 C -0.143 4.143 20 C -0.118 4.118 21 C -0.146 4.146 22 Br 0.060 6.940 23 H 0.097 0.903 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.134 0.866 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.009 0.991 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.051 0.949 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.593 3.236 15.339 17.007 hybrid contribution 1.790 -0.309 0.708 1.949 sum -4.803 2.927 16.047 17.004 Atomic orbital electron populations 1.21602 0.95550 1.02856 0.98279 1.21407 0.96191 0.93700 1.00889 1.21826 1.00149 0.97704 1.00341 1.22007 0.95938 0.89591 0.97640 1.61937 1.55595 1.01907 1.03710 1.20301 0.90750 0.92036 0.93363 1.21207 1.16990 1.28004 0.87321 0.88500 1.24880 0.96885 0.96410 0.95149 1.69882 1.41436 1.44386 0.98315 0.87025 0.83603 0.82101 0.77974 1.20412 1.21470 1.19394 1.21169 0.93713 0.99249 0.90578 1.19886 0.93522 0.95752 0.94927 1.21061 0.99522 0.96766 0.96008 1.21141 0.92938 0.99531 0.99453 1.21047 0.96493 0.98454 0.98328 1.21104 0.98644 0.96639 0.95443 1.21779 0.94995 1.00542 0.97242 1.96806 1.93093 1.55496 1.48601 0.90347 0.95411 0.94765 0.86613 0.93668 0.93240 0.94237 0.93223 0.95979 0.99145 0.96192 0.92883 0.89689 0.94850 0.85865 0.86034 0.85831 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.54 37.16 0.32 -2.08 16 2 C -0.10 -2.00 2.42 -90.62 -0.22 -2.22 16 3 C -0.14 -2.33 9.19 37.16 0.34 -1.99 16 4 C 0.08 1.42 4.29 -3.83 -0.02 1.40 16 5 N -0.51 -9.92 3.05 -237.52 -0.72 -10.65 16 6 C 0.16 3.72 3.87 -4.98 -0.02 3.70 16 7 C -0.50 -13.24 7.75 -34.44 -0.27 -13.51 16 8 H 0.10 2.77 5.38 -52.48 -0.28 2.49 16 9 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 10 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 11 Si 0.86 21.19 27.58 -169.99 -4.69 16.50 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.27 -6.37 6.38 56.52 0.36 -6.01 16 15 C 0.08 1.36 4.35 -4.98 -0.02 1.34 16 16 C -0.04 -0.57 4.67 -104.60 -0.49 -1.06 16 17 C -0.11 -1.45 8.85 -39.59 -0.35 -1.80 16 18 C -0.11 -1.23 10.05 -39.58 -0.40 -1.63 16 19 C -0.12 -1.36 10.05 -39.59 -0.40 -1.76 16 20 C -0.10 -1.25 9.79 -39.56 -0.39 -1.64 16 21 C -0.07 -0.98 6.22 -39.52 -0.25 -1.22 16 22 Br -0.03 -0.43 31.81 -68.01 -2.16 -2.60 16 23 H 0.08 1.66 6.93 -51.93 -0.36 1.30 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.12 2.72 5.15 -51.93 -0.27 2.45 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.84 6.46 -51.92 -0.34 0.51 16 31 H 0.02 0.42 7.66 -51.93 -0.40 0.02 16 32 H -0.01 -0.22 6.33 -51.93 -0.33 -0.55 16 33 H 0.02 0.47 7.32 -51.93 -0.38 0.09 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.08 1.46 7.10 -51.93 -0.37 1.09 16 36 H 0.03 0.52 7.83 -51.93 -0.41 0.12 16 37 H 0.12 1.39 7.98 -52.49 -0.42 0.97 16 38 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 333.83 15.07 5.03 5.03 Total: -1.00 -28.65 333.83 -10.12 -38.77 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.10 Total: -0.26 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -2.25 Total: -20.68 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.05 Total: -36.77 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.69 Total: 16.50 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.16 Total: -2.60 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.65 -10.12 -38.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049800832.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.255 kcal (2) G-P(sol) polarization free energy of solvation -28.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds