Wall clock time and date at job start Tue Mar 31 2020 14:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47065 * 2 1 4 4 C 1.52995 * 109.47335 * 120.00524 * 2 1 3 5 5 N 1.46901 * 109.47452 * 58.93676 * 4 2 1 6 6 C 1.46897 * 110.99578 * 78.39094 * 5 4 2 7 7 C 1.50697 * 109.47506 * 282.65299 * 6 5 4 8 8 H 1.08003 * 119.99320 * 354.38868 * 7 6 5 9 9 C 1.37874 * 120.00184 * 174.39009 * 7 6 5 10 10 N 1.31517 * 119.99866 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00187 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47332 * 89.99767 * 11 9 7 13 13 H 1.48497 * 109.47336 * 210.00245 * 11 9 7 14 14 H 1.48503 * 109.47151 * 330.00079 * 11 9 7 15 15 C 1.46904 * 110.99857 * 202.34760 * 5 4 2 16 16 C 1.50698 * 109.47327 * 71.99928 * 15 5 4 17 17 C 1.38240 * 120.00324 * 251.89756 * 16 15 5 18 18 C 1.38216 * 120.00997 * 179.97438 * 17 16 15 19 19 C 1.38261 * 120.02255 * 0.02562 * 18 17 16 20 20 C 1.38196 * 120.00641 * 359.97393 * 19 18 17 21 21 C 1.38301 * 120.00902 * 71.61681 * 16 15 5 22 22 Br 1.89110 * 120.00625 * 0.02939 * 21 16 15 23 23 H 1.09001 * 109.47232 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46970 * 299.99540 * 1 2 3 25 25 H 1.08999 * 109.47411 * 59.99898 * 1 2 3 26 26 H 1.08998 * 109.46970 * 240.00459 * 2 1 3 27 27 H 1.09000 * 109.47008 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47089 * 300.00299 * 3 2 1 29 29 H 1.08998 * 109.46851 * 60.00386 * 3 2 1 30 30 H 1.09009 * 109.47093 * 298.93815 * 4 2 1 31 31 H 1.08998 * 109.47214 * 178.94078 * 4 2 1 32 32 H 1.08999 * 109.47352 * 42.65792 * 6 5 4 33 33 H 1.09004 * 109.46568 * 162.65233 * 6 5 4 34 34 H 0.96996 * 120.00184 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.46269 * 191.99524 * 15 5 4 36 36 H 1.08992 * 109.46904 * 311.99017 * 15 5 4 37 37 H 1.08001 * 119.99485 * 359.97438 * 17 16 15 38 38 H 1.08005 * 119.98699 * 179.97438 * 18 17 16 39 39 H 1.07996 * 119.99425 * 179.97438 * 19 18 17 40 40 H 1.08010 * 120.00311 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.5296 -2.0987 1.2620 6 6 2.3001 -2.9542 0.3496 7 6 1.8698 -2.6901 -1.0703 8 1 1.0399 -2.0279 -1.2687 9 6 2.5355 -3.2937 -2.1159 10 7 2.1602 -3.0628 -3.3551 11 14 3.9702 -4.4395 -1.7727 12 1 3.4683 -5.8284 -1.6167 13 1 4.9298 -4.3841 -2.9046 14 1 4.6533 -4.0170 -0.5236 15 6 1.5299 -2.6475 2.6247 16 6 0.4394 -1.9907 3.4311 17 6 0.7637 -1.0838 4.4227 18 6 -0.2364 -0.4809 5.1621 19 6 -1.5616 -0.7848 4.9106 20 6 -1.8867 -1.6912 3.9195 21 6 -0.8863 -2.2906 3.1753 22 35 -1.3308 -3.5258 1.8141 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6923 -0.1967 2.1391 31 1 3.1299 -0.7378 1.2396 32 1 3.3623 -2.7332 0.4545 33 1 2.1208 -4.0010 0.5949 34 1 2.6287 -3.4872 -4.0908 35 1 1.3539 -3.7225 2.5833 36 1 2.4948 -2.4551 3.0936 37 1 1.7987 -0.8464 4.6198 38 1 0.0174 0.2273 5.9371 39 1 -2.3426 -0.3137 5.4889 40 1 -2.9219 -1.9283 3.7228 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049800832.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:53 Heat of formation + Delta-G solvation = 12.995653 kcal Electronic energy + Delta-G solvation = -20611.751455 eV Core-core repulsion = 17664.931550 eV Total energy + Delta-G solvation = -2946.819905 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.49613 -38.72720 -35.35635 -34.63024 -33.10047 -32.45023 -30.12732 -29.45209 -27.79495 -27.42918 -25.22939 -23.31097 -22.69954 -21.68073 -20.62347 -18.75012 -17.47360 -16.85641 -16.57198 -16.19395 -15.88353 -15.69550 -15.14451 -14.62655 -14.48263 -14.26841 -14.12265 -13.92234 -13.79043 -13.26961 -13.04768 -12.93865 -12.70412 -12.41580 -12.25870 -12.11033 -11.92808 -11.77415 -11.65414 -11.46737 -11.42489 -11.35325 -10.91289 -10.77349 -10.55444 -9.75212 -9.44321 -8.82609 -8.13642 -6.10223 0.28604 0.41500 1.01279 1.35296 1.37188 1.44949 2.41274 2.73424 3.18452 3.38213 3.84519 3.93098 4.18308 4.20164 4.31567 4.38769 4.51836 4.54056 4.64320 4.65580 4.73787 4.84513 4.87251 4.92904 4.97471 5.05164 5.09035 5.11204 5.20351 5.31748 5.40218 5.47549 5.53311 5.56574 5.69141 5.78862 5.91476 5.99731 6.17976 6.54550 6.77905 6.99277 7.49343 9.01449 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.014596 B = 0.006079 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.928154 B = 4605.155092 C = 5352.534217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.103 4.103 3 C -0.135 4.135 4 C 0.082 3.918 5 N -0.514 5.514 6 C 0.172 3.828 7 C -0.483 4.483 8 H 0.068 0.932 9 C 0.009 3.991 10 N -0.949 5.949 11 Si 0.925 3.075 12 H -0.274 1.274 13 H -0.290 1.290 14 H -0.254 1.254 15 C 0.083 3.917 16 C -0.059 4.059 17 C -0.116 4.116 18 C -0.104 4.104 19 C -0.115 4.115 20 C -0.107 4.107 21 C -0.081 4.081 22 Br -0.059 7.059 23 H 0.051 0.949 24 H 0.046 0.954 25 H 0.029 0.971 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.017 0.983 32 H -0.014 1.014 33 H 0.017 0.983 34 H 0.260 0.740 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.140 0.860 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.711 5.272 19.627 21.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.122 4.122 3 C -0.193 4.193 4 C -0.046 4.046 5 N -0.237 5.237 6 C 0.045 3.955 7 C -0.522 4.522 8 H 0.086 0.914 9 C -0.187 4.187 10 N -0.591 5.591 11 Si 0.751 3.249 12 H -0.200 1.200 13 H -0.216 1.216 14 H -0.178 1.178 15 C -0.044 4.044 16 C -0.061 4.061 17 C -0.135 4.135 18 C -0.122 4.122 19 C -0.134 4.134 20 C -0.127 4.127 21 C -0.162 4.162 22 Br 0.027 6.973 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.035 0.965 32 H 0.004 0.996 33 H 0.035 0.965 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.157 0.843 38 H 0.174 0.826 39 H 0.175 0.825 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.308 4.747 18.771 20.363 hybrid contribution 1.586 -0.672 -0.230 1.738 sum -4.722 4.074 18.540 19.561 Atomic orbital electron populations 1.21451 0.95432 1.01324 0.98892 1.21276 0.96237 0.95380 0.99274 1.21737 1.00400 0.95591 1.01536 1.21980 0.95527 0.89084 0.98014 1.61791 1.54856 1.01958 1.05131 1.20032 0.90665 0.92549 0.92241 1.21420 1.15381 1.26050 0.89300 0.91383 1.25628 0.99783 0.98378 0.94940 1.70033 1.43339 1.46414 0.99340 0.86048 0.80539 0.80120 0.78202 1.20000 1.21578 1.17784 1.21142 0.95328 0.98850 0.89125 1.19766 0.92705 0.97420 0.96243 1.21287 1.01003 0.95953 0.95304 1.21552 0.92368 0.99048 0.99248 1.21467 0.97644 0.97039 0.97229 1.21333 0.98711 0.96903 0.95704 1.21845 0.95848 1.01070 0.97391 1.96774 1.93248 1.56953 1.50306 0.92980 0.93527 0.95179 0.91465 0.93233 0.93213 0.91834 0.90809 0.96498 0.99611 0.96458 0.93111 0.90825 0.93503 0.84267 0.82593 0.82538 0.84532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.33 8.54 71.98 0.61 -3.71 16 2 C -0.10 -3.97 2.42 -10.80 -0.03 -3.99 16 3 C -0.13 -4.20 9.19 71.98 0.66 -3.54 16 4 C 0.08 2.93 4.29 86.30 0.37 3.30 16 5 N -0.51 -19.94 3.05 -905.38 -2.76 -22.70 16 6 C 0.17 7.99 3.87 85.56 0.33 8.33 16 7 C -0.48 -26.60 7.75 25.60 0.20 -26.41 16 8 H 0.07 4.10 5.38 -2.91 -0.02 4.08 16 9 C 0.01 0.51 5.47 84.65 0.46 0.97 16 10 N -0.95 -58.95 13.96 21.45 0.30 -58.65 16 11 Si 0.92 44.43 27.58 68.60 1.89 46.32 16 12 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 13 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 14 H -0.25 -11.44 6.38 99.48 0.64 -10.80 16 15 C 0.08 2.70 4.35 85.56 0.37 3.07 16 16 C -0.06 -1.65 4.67 -19.85 -0.09 -1.74 16 17 C -0.12 -2.51 8.85 22.26 0.20 -2.31 16 18 C -0.10 -1.77 10.05 22.27 0.22 -1.54 16 19 C -0.12 -2.01 10.05 22.26 0.22 -1.79 16 20 C -0.11 -2.44 9.79 22.28 0.22 -2.23 16 21 C -0.08 -2.34 6.22 22.31 0.14 -2.20 16 22 Br -0.06 -1.98 31.81 -20.37 -0.65 -2.63 16 23 H 0.05 2.26 6.93 -2.39 -0.02 2.24 16 24 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.07 3.28 5.15 -2.39 -0.01 3.27 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 2.29 6.46 -2.38 -0.02 2.28 16 31 H 0.02 0.62 7.66 -2.39 -0.02 0.60 16 32 H -0.01 -0.65 6.33 -2.39 -0.02 -0.66 16 33 H 0.02 0.82 7.32 -2.39 -0.02 0.80 16 34 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 35 H 0.07 2.52 7.10 -2.39 -0.02 2.50 16 36 H 0.05 1.37 7.83 -2.39 -0.02 1.35 16 37 H 0.14 2.52 7.98 -2.91 -0.02 2.50 16 38 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 39 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 40 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -64.39 333.83 3.62 -60.77 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.94 Total: 10.67 kcal Atomic # 6 Polarization: -37.68 SS G_CDS: 3.89 Total: -33.79 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -2.46 Total: -81.35 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.89 Total: 46.32 kcal Atomic # 35 Polarization: -1.98 SS G_CDS: -0.65 Total: -2.63 kcal Total: -64.39 3.62 -60.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049800832.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.768 kcal (2) G-P(sol) polarization free energy of solvation -64.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds