Wall clock time and date at job start Tue Mar 31 2020 14:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47207 * 2 1 4 4 N 1.46893 * 109.47362 * 174.86232 * 3 2 1 5 5 C 1.46907 * 110.99887 * 76.03321 * 4 3 2 6 6 C 1.50697 * 109.47029 * 67.92993 * 5 4 3 7 7 H 1.08001 * 119.99531 * 354.69228 * 6 5 4 8 8 C 1.37877 * 119.99977 * 174.42579 * 6 5 4 9 9 N 1.31508 * 119.99907 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99925 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47285 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47049 * 120.00070 * 10 8 6 13 13 H 1.48497 * 109.47536 * 239.99867 * 10 8 6 14 14 C 1.46897 * 111.00379 * 199.98834 * 4 3 2 15 15 H 1.09005 * 109.47029 * 296.04669 * 14 4 3 16 16 C 1.52997 * 109.47588 * 176.04608 * 14 4 3 17 17 C 1.50706 * 109.47196 * 56.04640 * 14 4 3 18 18 C 1.38242 * 120.00094 * 25.00116 * 17 14 4 19 19 C 1.38223 * 120.00555 * 179.97438 * 18 17 14 20 20 C 1.38255 * 120.02336 * 0.02562 * 19 18 17 21 21 C 1.38200 * 120.00798 * 359.97438 * 20 19 18 22 22 C 1.38302 * 120.00366 * 204.72739 * 17 14 4 23 23 Br 1.89091 * 120.01178 * 0.02562 * 22 17 14 24 24 H 1.09006 * 109.47141 * 59.99678 * 1 2 3 25 25 H 1.08996 * 109.47278 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47027 * 300.00148 * 1 2 3 27 27 H 1.08999 * 109.47261 * 240.00232 * 2 1 3 28 28 H 1.08996 * 109.47025 * 119.99784 * 2 1 3 29 29 H 1.09008 * 109.46900 * 54.86481 * 3 2 1 30 30 H 1.09004 * 109.47073 * 294.86670 * 3 2 1 31 31 H 1.09001 * 109.46778 * 307.92581 * 5 4 3 32 32 H 1.09001 * 109.46910 * 187.92618 * 5 4 3 33 33 H 0.97000 * 119.99821 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47339 * 300.00405 * 16 14 4 35 35 H 1.09000 * 109.47030 * 59.99783 * 16 14 4 36 36 H 1.08995 * 109.47619 * 180.02562 * 16 14 4 37 37 H 1.07997 * 119.99534 * 359.95535 * 18 17 14 38 38 H 1.08001 * 119.98427 * 180.02562 * 19 18 17 39 39 H 1.07997 * 119.99852 * 179.97438 * 20 19 18 40 40 H 1.08004 * 120.00264 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5037 1.4444 0.1240 5 6 4.1402 1.0745 -1.1473 6 6 3.9053 2.1634 -2.1622 7 1 3.2688 3.0010 -1.9179 8 6 4.5072 2.0930 -3.4006 9 7 5.2868 1.0759 -3.6960 10 14 4.2154 3.4424 -4.6589 11 1 3.3065 4.4667 -4.0846 12 1 5.5107 4.0749 -5.0158 13 1 3.5976 2.8586 -5.8766 14 6 3.9904 2.7473 0.5969 15 1 3.7601 3.5122 -0.1449 16 6 5.5043 2.6805 0.8075 17 6 3.3167 3.0924 1.9001 18 6 2.8270 2.0868 2.7126 19 6 2.2096 2.4031 3.9081 20 6 2.0810 3.7252 4.2916 21 6 2.5703 4.7311 3.4800 22 6 3.1934 4.4147 2.2860 23 35 3.8693 5.7902 1.1783 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6035 1.9823 0.8405 30 1 1.7537 1.9292 -0.9324 31 1 3.7110 0.1406 -1.5102 32 1 5.2117 0.9464 -0.9933 33 1 5.7100 1.0262 -4.5674 34 1 5.7346 1.9156 1.5491 35 1 5.9916 2.4309 -0.1351 36 1 5.8653 3.6471 1.1588 37 1 2.9266 1.0540 2.4130 38 1 1.8275 1.6172 4.5428 39 1 1.5982 3.9719 5.2256 40 1 2.4702 5.7638 3.7799 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052134858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:32 Heat of formation + Delta-G solvation = 9.185780 kcal Electronic energy + Delta-G solvation = -20588.274414 eV Core-core repulsion = 17641.289301 eV Total energy + Delta-G solvation = -2946.985114 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.87525 -38.58026 -34.94273 -34.76049 -33.21328 -32.27764 -30.52230 -29.76714 -28.69834 -25.95947 -25.32792 -23.67681 -22.80101 -21.74271 -20.74726 -18.49655 -17.55952 -17.18964 -16.57629 -16.28260 -15.86042 -15.44861 -15.21342 -14.82065 -14.47753 -14.25369 -14.01258 -13.89040 -13.44811 -13.20549 -13.12928 -12.89561 -12.79044 -12.50050 -12.32883 -12.26116 -12.04106 -11.85418 -11.82949 -11.68180 -11.63777 -11.52135 -11.28686 -10.94014 -10.55831 -9.65880 -9.52876 -8.96681 -8.13162 -6.29843 0.22452 0.43727 0.76323 1.31392 1.34260 1.44515 2.36520 2.76560 3.11853 3.27264 3.78141 4.03512 4.18109 4.23205 4.34702 4.44935 4.48768 4.55661 4.60240 4.62959 4.70764 4.84453 4.92067 4.94618 5.04820 5.12862 5.18534 5.26243 5.28996 5.31951 5.39751 5.43483 5.43915 5.52583 5.58582 5.63770 5.81076 6.00647 6.11322 6.32222 6.59426 6.90883 7.39947 8.88812 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.011743 B = 0.006612 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.875923 B = 4233.917856 C = 5795.607822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C 0.057 3.943 4 N -0.527 5.527 5 C 0.203 3.797 6 C -0.543 4.543 7 H 0.049 0.951 8 C 0.018 3.982 9 N -0.923 5.923 10 Si 0.941 3.059 11 H -0.271 1.271 12 H -0.279 1.279 13 H -0.278 1.278 14 C 0.120 3.880 15 H 0.045 0.955 16 C -0.123 4.123 17 C -0.060 4.060 18 C -0.102 4.102 19 C -0.104 4.104 20 C -0.115 4.115 21 C -0.098 4.098 22 C -0.107 4.107 23 Br -0.068 7.068 24 H 0.041 0.959 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.036 0.964 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.010 0.990 31 H 0.007 0.993 32 H 0.015 0.985 33 H 0.263 0.737 34 H 0.058 0.942 35 H 0.043 0.957 36 H 0.060 0.940 37 H 0.136 0.864 38 H 0.156 0.844 39 H 0.163 0.837 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.471 6.052 17.170 19.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C -0.071 4.071 4 N -0.250 5.250 5 C 0.076 3.924 6 C -0.582 4.582 7 H 0.067 0.933 8 C -0.181 4.181 9 N -0.563 5.563 10 Si 0.767 3.233 11 H -0.196 1.196 12 H -0.204 1.204 13 H -0.203 1.203 14 C 0.011 3.989 15 H 0.063 0.937 16 C -0.181 4.181 17 C -0.062 4.062 18 C -0.121 4.121 19 C -0.122 4.122 20 C -0.133 4.133 21 C -0.118 4.118 22 C -0.186 4.186 23 Br 0.018 6.982 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.028 0.972 31 H 0.025 0.975 32 H 0.033 0.967 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.154 0.846 38 H 0.174 0.826 39 H 0.180 0.820 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.967 6.148 16.960 19.338 hybrid contribution 0.021 0.900 -1.904 2.106 sum -6.945 7.048 15.056 18.016 Atomic orbital electron populations 1.21672 0.94299 1.02194 1.01643 1.21393 0.96215 0.95697 1.01364 1.22123 0.88350 0.97543 0.99075 1.62514 1.05606 1.27095 1.29773 1.19419 0.93986 0.94306 0.84660 1.21907 1.28573 1.07953 0.99776 0.93312 1.25619 0.94888 0.97513 1.00071 1.70044 1.32131 1.31494 1.22632 0.85764 0.78087 0.79942 0.79541 1.19598 1.20424 1.20328 1.20429 0.94789 0.91770 0.91887 0.93674 1.21610 0.94036 1.01246 1.01206 1.19879 0.97760 0.92094 0.96483 1.21282 0.97297 0.99585 0.93912 1.21646 0.97230 0.97726 0.95556 1.21499 0.99461 0.91943 1.00415 1.21303 0.96975 1.01487 0.92000 1.21852 1.06733 0.91949 0.98103 1.96663 1.86245 1.47660 1.67659 0.93954 0.91379 0.91617 0.94550 0.90927 0.90799 0.97198 0.97492 0.96707 0.92773 0.92257 0.93802 0.92113 0.84634 0.82620 0.81968 0.83643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.91 71.98 0.71 -2.97 16 2 C -0.11 -3.61 5.97 30.60 0.18 -3.42 16 3 C 0.06 2.19 3.95 86.31 0.34 2.53 16 4 N -0.53 -22.09 3.64 -879.89 -3.21 -25.29 16 5 C 0.20 10.50 4.57 85.55 0.39 10.89 16 6 C -0.54 -30.17 7.37 25.60 0.19 -29.99 16 7 H 0.05 2.75 5.99 -2.91 -0.02 2.74 16 8 C 0.02 1.05 5.46 84.66 0.46 1.51 16 9 N -0.92 -54.97 13.29 21.45 0.28 -54.69 16 10 Si 0.94 44.94 29.54 68.60 2.03 46.97 16 11 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 14 C 0.12 4.75 1.36 44.17 0.06 4.81 16 15 H 0.05 2.06 5.09 -2.38 -0.01 2.04 16 16 C -0.12 -4.83 8.92 71.98 0.64 -4.19 16 17 C -0.06 -1.94 4.03 -19.85 -0.08 -2.02 16 18 C -0.10 -2.79 7.57 22.27 0.17 -2.62 16 19 C -0.10 -2.06 10.05 22.27 0.22 -1.84 16 20 C -0.11 -2.07 10.05 22.26 0.22 -1.84 16 21 C -0.10 -2.20 9.79 22.29 0.22 -1.98 16 22 C -0.11 -3.14 6.22 22.31 0.14 -3.00 16 23 Br -0.07 -2.10 31.33 -20.37 -0.64 -2.74 16 24 H 0.04 1.17 8.14 -2.38 -0.02 1.16 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 27 H 0.04 1.40 7.00 -2.39 -0.02 1.38 16 28 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.07 2.55 5.31 -2.38 -0.01 2.54 16 30 H 0.01 0.44 6.64 -2.38 -0.02 0.42 16 31 H 0.01 0.39 6.78 -2.39 -0.02 0.38 16 32 H 0.01 0.84 6.52 -2.39 -0.02 0.82 16 33 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 34 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.04 1.98 6.49 -2.39 -0.02 1.96 16 36 H 0.06 2.16 7.59 -2.39 -0.02 2.15 16 37 H 0.14 3.91 6.91 -2.91 -0.02 3.89 16 38 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 40 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -62.62 331.85 3.36 -59.25 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 1.02 Total: 10.61 kcal Atomic # 6 Polarization: -38.00 SS G_CDS: 3.87 Total: -34.12 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -2.92 Total: -79.98 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 35 Polarization: -2.10 SS G_CDS: -0.64 Total: -2.74 kcal Total: -62.62 3.36 -59.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052134858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.441 kcal (2) G-P(sol) polarization free energy of solvation -62.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds