Wall clock time and date at job start Tue Mar 31 2020 14:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99884 * 2 1 4 4 O 1.45195 * 109.47074 * 134.99853 * 3 2 1 5 5 C 1.34717 * 116.99524 * 179.97438 * 4 3 2 6 6 O 1.21462 * 120.00170 * 359.97438 * 5 4 3 7 7 C 1.47729 * 119.99714 * 180.02562 * 5 4 3 8 8 C 1.39622 * 120.15060 * 180.02562 * 7 5 4 9 9 C 1.37945 * 119.84969 * 180.02562 * 8 7 5 10 10 C 1.38365 * 120.15161 * 0.02562 * 9 8 7 11 11 S 1.76197 * 119.85065 * 179.97438 * 10 9 8 12 12 O 1.42100 * 106.39925 * 336.45651 * 11 10 9 13 13 O 1.42103 * 106.39966 * 203.53767 * 11 10 9 14 14 N 1.65597 * 107.21750 * 89.99747 * 11 10 9 15 15 C 1.46506 * 120.00079 * 65.00357 * 14 11 10 16 16 C 1.50699 * 109.47214 * 164.72113 * 15 14 11 17 17 H 1.07997 * 119.99775 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99959 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00023 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00046 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47226 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46844 * 120.00614 * 20 18 16 23 23 H 1.48500 * 109.47231 * 240.00389 * 20 18 16 24 24 C 1.38370 * 120.29814 * 0.23362 * 10 9 8 25 25 C 1.37943 * 120.15314 * 359.48790 * 24 10 9 26 26 H 1.08000 * 119.99715 * 180.02562 * 1 2 3 27 27 H 1.07996 * 120.00008 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00379 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46933 * 14.99567 * 3 2 1 30 30 H 1.08998 * 109.46646 * 255.00128 * 3 2 1 31 31 H 1.08004 * 120.07280 * 359.97438 * 8 7 5 32 32 H 1.08001 * 119.92448 * 179.97438 * 9 8 7 33 33 H 0.97005 * 120.00050 * 244.72378 * 14 11 10 34 34 H 1.08999 * 109.46682 * 284.72550 * 15 14 11 35 35 H 1.09000 * 109.47243 * 44.71866 * 15 14 11 36 36 H 0.97001 * 120.00013 * 179.97438 * 19 18 16 37 37 H 1.07998 * 119.92018 * 179.72619 * 24 10 9 38 38 H 1.07998 * 120.07644 * 180.25923 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1438 1.2403 0.9680 5 6 3.9199 2.3344 1.0924 6 8 3.7005 3.3154 0.4105 7 6 5.0385 2.3406 2.0572 8 6 5.8446 3.4730 2.1891 9 6 6.8878 3.4718 3.0917 10 6 7.1366 2.3517 3.8649 11 16 8.4716 2.3586 5.0148 12 8 9.3930 3.3373 4.5538 13 8 8.8243 0.9987 5.2283 14 7 7.8756 2.9189 6.4546 15 6 6.8651 2.1448 7.1800 16 6 6.7658 2.6507 8.5960 17 1 7.3929 3.4669 8.9231 18 6 5.8743 2.0716 9.4740 19 7 5.1110 1.0774 9.0758 20 14 5.7517 2.6982 11.2295 21 1 6.7109 3.8148 11.4247 22 1 4.3713 3.1812 11.4873 23 1 6.0749 1.5970 12.1719 24 6 6.3450 1.2242 3.7354 25 6 5.2950 1.2138 2.8409 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8501 -0.9352 0.0004 29 1 1.3855 2.1161 0.2659 30 1 2.4755 1.4867 -0.9927 31 1 5.6523 4.3476 1.5853 32 1 7.5124 4.3470 3.1944 33 1 8.1984 3.7576 6.8197 34 1 5.8997 2.2548 6.6862 35 1 7.1507 1.0929 7.1891 36 1 4.4841 0.6697 9.6936 37 1 6.5474 0.3517 4.3389 38 1 4.6753 0.3346 2.7439 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057883627.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:38 Heat of formation + Delta-G solvation = -113.330916 kcal Electronic energy + Delta-G solvation = -24301.311699 eV Core-core repulsion = 20429.652161 eV Total energy + Delta-G solvation = -3871.659539 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.84450 -38.93737 -36.95146 -36.82858 -35.44605 -34.70268 -34.39945 -32.21438 -31.82752 -31.20831 -27.34697 -26.80310 -24.64752 -22.96718 -22.51841 -21.32526 -20.47038 -19.20433 -18.32802 -17.75533 -17.49077 -17.05146 -16.73794 -15.98845 -15.71434 -15.40000 -14.96781 -14.77082 -14.47366 -14.21280 -13.71463 -13.61344 -13.39980 -13.35380 -12.96890 -12.77508 -12.59731 -12.18857 -11.88379 -11.71249 -11.64174 -11.60823 -11.34264 -11.21707 -11.02297 -10.98173 -10.77321 -10.60848 -10.18366 -9.91512 -9.56339 -9.47998 -9.17097 -8.97258 -8.30549 -6.22726 -4.27369 0.13441 0.86582 1.19498 1.55831 2.15763 2.50198 3.21971 3.29771 3.32519 3.36985 3.65770 4.14317 4.24607 4.30911 4.47840 4.51706 4.62774 4.75553 4.83671 4.93292 5.06289 5.14679 5.17904 5.36197 5.38592 5.45335 5.80530 5.83982 5.98020 6.04421 6.08526 6.09764 6.18503 6.34897 6.60979 7.21053 7.26544 7.42298 7.71423 7.75186 8.11096 8.76828 9.38054 10.87635 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.011177 B = 0.003322 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.532206 B = 8426.971577 C =10158.995319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.160 4.160 3 C 0.095 3.905 4 O -0.346 6.346 5 C 0.512 3.488 6 O -0.502 6.502 7 C -0.083 4.083 8 C -0.080 4.080 9 C -0.032 4.032 10 C -0.637 4.637 11 S 2.689 3.311 12 O -0.975 6.975 13 O -0.956 6.956 14 N -1.100 6.100 15 C 0.244 3.756 16 C -0.530 4.530 17 H 0.067 0.933 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.904 3.096 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.282 1.282 24 C -0.026 4.026 25 C -0.082 4.082 26 H 0.110 0.890 27 H 0.100 0.900 28 H 0.123 0.877 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.145 0.855 32 H 0.150 0.850 33 H 0.412 0.588 34 H 0.023 0.977 35 H 0.040 0.960 36 H 0.266 0.734 37 H 0.154 0.846 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.232 -0.192 -16.697 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C 0.022 3.978 4 O -0.262 6.262 5 C 0.356 3.644 6 O -0.391 6.391 7 C -0.084 4.084 8 C -0.099 4.099 9 C -0.051 4.051 10 C -0.721 4.721 11 S 2.775 3.225 12 O -0.965 6.965 13 O -0.946 6.946 14 N -0.863 5.863 15 C 0.121 3.879 16 C -0.569 4.569 17 H 0.085 0.915 18 C -0.142 4.142 19 N -0.528 5.528 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.208 1.208 24 C -0.045 4.045 25 C -0.101 4.101 26 H 0.128 0.872 27 H 0.119 0.881 28 H 0.141 0.859 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.247 0.753 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.171 0.829 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.728 -0.489 -17.137 17.784 hybrid contribution -1.047 0.755 0.740 1.488 sum -5.775 0.266 -16.397 17.386 Atomic orbital electron populations 1.23926 0.95399 1.02749 0.98318 1.22679 0.95715 0.97649 1.01725 1.22111 0.86912 0.97113 0.91697 1.86578 1.41655 1.40005 1.57993 1.21200 0.81319 0.80591 0.81260 1.90834 1.69864 1.34450 1.43925 1.19349 0.95009 0.96649 0.97419 1.21322 0.93591 0.97220 0.97744 1.20889 0.95268 0.96733 0.92199 1.31646 1.22030 1.00755 1.17687 1.02041 0.73358 0.73957 0.73137 1.93541 1.60075 1.61355 1.81529 1.93583 1.80976 1.35134 1.84922 1.55442 1.58350 1.36403 1.36113 1.19138 0.84995 0.91431 0.92348 1.21215 1.22104 1.18748 0.94876 0.91489 1.24969 0.95166 0.94811 0.99233 1.69939 1.23459 1.23376 1.35986 0.86355 0.77959 0.78842 0.83754 1.19580 1.20864 1.20755 1.21072 0.91495 0.96894 0.94995 1.21594 0.96831 0.97685 0.93974 0.87204 0.88148 0.85942 0.90402 0.90012 0.83767 0.83238 0.75286 0.95948 0.94179 0.92468 0.82881 0.83498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 14.31 29.01 0.42 -0.64 16 2 C -0.16 -1.21 9.90 -36.03 -0.36 -1.57 16 3 C 0.09 0.87 5.89 36.01 0.21 1.09 16 4 O -0.35 -4.04 9.46 -40.54 -0.38 -4.42 16 5 C 0.51 6.77 7.90 34.61 0.27 7.04 16 6 O -0.50 -7.40 16.14 -19.24 -0.31 -7.71 16 7 C -0.08 -1.11 5.87 -104.98 -0.62 -1.73 16 8 C -0.08 -1.04 9.60 -39.17 -0.38 -1.42 16 9 C -0.03 -0.44 9.50 -39.64 -0.38 -0.81 16 10 C -0.64 -9.85 5.95 -39.49 -0.24 -10.09 16 11 S 2.69 46.82 5.74 -107.50 -0.62 46.21 16 12 O -0.97 -17.66 17.27 -57.17 -0.99 -18.65 16 13 O -0.96 -19.26 16.73 -57.17 -0.96 -20.22 16 14 N -1.10 -20.96 5.99 -11.65 -0.07 -21.03 16 15 C 0.24 5.74 5.98 -5.19 -0.03 5.71 16 16 C -0.53 -13.74 9.27 -34.44 -0.32 -14.06 16 17 H 0.07 1.66 7.65 -52.49 -0.40 1.26 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -24.67 13.29 55.43 0.74 -23.93 16 20 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 C -0.03 -0.38 9.50 -39.64 -0.38 -0.76 16 25 C -0.08 -1.08 9.62 -39.17 -0.38 -1.46 16 26 H 0.11 0.54 8.06 -52.49 -0.42 0.12 16 27 H 0.10 0.57 7.90 -52.49 -0.41 0.15 16 28 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 29 H 0.08 0.70 7.86 -51.93 -0.41 0.29 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.14 1.63 7.65 -52.48 -0.40 1.23 16 32 H 0.15 1.76 7.60 -52.49 -0.40 1.36 16 33 H 0.41 7.14 8.54 -34.47 -0.29 6.85 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.04 1.01 7.75 -51.93 -0.40 0.61 16 36 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.15 2.21 7.60 -52.49 -0.40 1.81 16 38 H 0.15 1.62 7.61 -52.49 -0.40 1.22 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -32.48 355.06 -8.86 -41.34 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -4.34 Total: 4.88 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -2.26 Total: -17.15 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.67 Total: -44.97 kcal Atomic # 8 Polarization: -48.37 SS G_CDS: -2.64 Total: -51.00 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 46.82 SS G_CDS: -0.62 Total: 46.21 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.48 -8.86 -41.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057883627.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.989 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds