Wall clock time and date at job start Tue Mar 31 2020 14:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99884 * 2 1 4 4 O 1.45195 * 109.47074 * 134.99853 * 3 2 1 5 5 C 1.34717 * 116.99524 * 179.97438 * 4 3 2 6 6 O 1.21462 * 120.00170 * 359.97438 * 5 4 3 7 7 C 1.47729 * 119.99714 * 180.02562 * 5 4 3 8 8 C 1.39622 * 120.15060 * 180.02562 * 7 5 4 9 9 C 1.37945 * 119.84969 * 180.02562 * 8 7 5 10 10 C 1.38365 * 120.15161 * 0.02562 * 9 8 7 11 11 S 1.76197 * 119.85065 * 179.97438 * 10 9 8 12 12 O 1.42100 * 106.39925 * 336.45651 * 11 10 9 13 13 O 1.42103 * 106.39966 * 203.53767 * 11 10 9 14 14 N 1.65597 * 107.21750 * 89.99747 * 11 10 9 15 15 C 1.46506 * 120.00079 * 65.00357 * 14 11 10 16 16 C 1.50699 * 109.47214 * 164.72113 * 15 14 11 17 17 H 1.07997 * 119.99775 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99959 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00023 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00046 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47226 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46844 * 120.00614 * 20 18 16 23 23 H 1.48500 * 109.47231 * 240.00389 * 20 18 16 24 24 C 1.38370 * 120.29814 * 0.23362 * 10 9 8 25 25 C 1.37943 * 120.15314 * 359.48790 * 24 10 9 26 26 H 1.08000 * 119.99715 * 180.02562 * 1 2 3 27 27 H 1.07996 * 120.00008 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00379 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46933 * 14.99567 * 3 2 1 30 30 H 1.08998 * 109.46646 * 255.00128 * 3 2 1 31 31 H 1.08004 * 120.07280 * 359.97438 * 8 7 5 32 32 H 1.08001 * 119.92448 * 179.97438 * 9 8 7 33 33 H 0.97005 * 120.00050 * 244.72378 * 14 11 10 34 34 H 1.08999 * 109.46682 * 284.72550 * 15 14 11 35 35 H 1.09000 * 109.47243 * 44.71866 * 15 14 11 36 36 H 0.97001 * 120.00013 * 179.97438 * 19 18 16 37 37 H 1.07998 * 119.92018 * 179.72619 * 24 10 9 38 38 H 1.07998 * 120.07644 * 180.25923 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1438 1.2403 0.9680 5 6 3.9199 2.3344 1.0924 6 8 3.7005 3.3154 0.4105 7 6 5.0385 2.3406 2.0572 8 6 5.8446 3.4730 2.1891 9 6 6.8878 3.4718 3.0917 10 6 7.1366 2.3517 3.8649 11 16 8.4716 2.3586 5.0148 12 8 9.3930 3.3373 4.5538 13 8 8.8243 0.9987 5.2283 14 7 7.8756 2.9189 6.4546 15 6 6.8651 2.1448 7.1800 16 6 6.7658 2.6507 8.5960 17 1 7.3929 3.4669 8.9231 18 6 5.8743 2.0716 9.4740 19 7 5.1110 1.0774 9.0758 20 14 5.7517 2.6982 11.2295 21 1 6.7109 3.8148 11.4247 22 1 4.3713 3.1812 11.4873 23 1 6.0749 1.5970 12.1719 24 6 6.3450 1.2242 3.7354 25 6 5.2950 1.2138 2.8409 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8501 -0.9352 0.0004 29 1 1.3855 2.1161 0.2659 30 1 2.4755 1.4867 -0.9927 31 1 5.6523 4.3476 1.5853 32 1 7.5124 4.3470 3.1944 33 1 8.1984 3.7576 6.8197 34 1 5.8997 2.2548 6.6862 35 1 7.1507 1.0929 7.1891 36 1 4.4841 0.6697 9.6936 37 1 6.5474 0.3517 4.3389 38 1 4.6753 0.3346 2.7439 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057883627.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:37 Heat of formation + Delta-G solvation = -134.677016 kcal Electronic energy + Delta-G solvation = -24302.237335 eV Core-core repulsion = 20429.652161 eV Total energy + Delta-G solvation = -3872.585175 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.84844 -40.00179 -38.32907 -37.90506 -36.95604 -36.47141 -35.03780 -34.12057 -32.92933 -32.29738 -28.72058 -28.11090 -25.68545 -24.51477 -23.96000 -22.36501 -21.06248 -20.61984 -19.44965 -19.18389 -18.78041 -18.17748 -17.70008 -17.66314 -17.22124 -16.59920 -16.21780 -15.88856 -15.77255 -15.24460 -15.08940 -14.71971 -14.60194 -14.44252 -14.14398 -14.03790 -13.83260 -13.74862 -13.56660 -13.23073 -13.13616 -12.78172 -12.50639 -12.45519 -12.30281 -12.14079 -12.07102 -12.02678 -11.76274 -11.38644 -10.86367 -10.69926 -10.46939 -10.25576 -10.11621 -8.23604 -6.34750 -1.00616 -0.54379 0.11359 0.91583 1.08244 1.45420 1.47284 1.58944 1.69122 2.06793 2.37337 2.44249 2.75439 3.11904 3.26657 3.36229 3.66388 3.72769 3.82280 3.99709 4.09351 4.18122 4.23798 4.40144 4.44972 4.60909 4.75759 4.77593 4.86197 4.90048 4.99237 5.15994 5.29566 5.33078 5.52239 5.57795 5.63507 5.76358 5.98965 6.32178 6.43116 6.79432 7.34824 8.87501 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.011177 B = 0.003322 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.532206 B = 8426.971577 C =10158.995319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.178 4.178 3 C 0.089 3.911 4 O -0.347 6.347 5 C 0.516 3.484 6 O -0.519 6.519 7 C -0.087 4.087 8 C -0.077 4.077 9 C -0.033 4.033 10 C -0.646 4.646 11 S 2.709 3.291 12 O -0.979 6.979 13 O -0.987 6.987 14 N -1.100 6.100 15 C 0.256 3.744 16 C -0.548 4.548 17 H 0.074 0.926 18 C 0.009 3.991 19 N -0.924 5.924 20 Si 0.969 3.031 21 H -0.262 1.262 22 H -0.278 1.278 23 H -0.281 1.281 24 C -0.041 4.041 25 C -0.078 4.078 26 H 0.126 0.874 27 H 0.107 0.893 28 H 0.127 0.873 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.164 0.836 32 H 0.170 0.830 33 H 0.420 0.580 34 H 0.015 0.985 35 H 0.017 0.983 36 H 0.268 0.732 37 H 0.150 0.850 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.105 0.556 -17.130 18.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.196 4.196 3 C 0.017 3.983 4 O -0.264 6.264 5 C 0.361 3.639 6 O -0.409 6.409 7 C -0.088 4.088 8 C -0.095 4.095 9 C -0.052 4.052 10 C -0.734 4.734 11 S 2.799 3.201 12 O -0.969 6.969 13 O -0.977 6.977 14 N -0.862 5.862 15 C 0.132 3.868 16 C -0.587 4.587 17 H 0.092 0.908 18 C -0.191 4.191 19 N -0.563 5.563 20 Si 0.794 3.206 21 H -0.186 1.186 22 H -0.204 1.204 23 H -0.207 1.207 24 C -0.060 4.060 25 C -0.096 4.096 26 H 0.144 0.856 27 H 0.125 0.875 28 H 0.145 0.855 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.182 0.818 32 H 0.187 0.813 33 H 0.256 0.744 34 H 0.033 0.967 35 H 0.035 0.965 36 H 0.077 0.923 37 H 0.168 0.832 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.562 0.268 -17.548 18.410 hybrid contribution -0.855 0.505 0.734 1.235 sum -6.417 0.772 -16.814 18.013 Atomic orbital electron populations 1.24166 0.95020 1.03880 0.96071 1.22680 0.96155 0.97021 1.03739 1.22356 0.86366 0.98257 0.91358 1.86572 1.42013 1.39220 1.58579 1.21106 0.81253 0.80673 0.80832 1.90824 1.70393 1.35117 1.44613 1.19545 0.95143 0.96801 0.97299 1.21564 0.92880 0.97752 0.97349 1.21152 0.95635 0.96664 0.91714 1.31244 1.21924 1.02102 1.18128 1.01190 0.73368 0.72866 0.72665 1.93528 1.60708 1.61354 1.81350 1.93540 1.82009 1.36764 1.85432 1.55254 1.57553 1.36343 1.37092 1.18729 0.85485 0.90586 0.92048 1.21650 1.22094 1.18918 0.96084 0.90757 1.25839 0.94894 0.94983 1.03353 1.70046 1.24211 1.24574 1.37462 0.85331 0.78139 0.78409 0.78710 1.18578 1.20405 1.20651 1.21174 0.92254 0.96819 0.95790 1.21764 0.96287 0.98459 0.93123 0.85583 0.87517 0.85495 0.90277 0.89513 0.81834 0.81302 0.74399 0.96743 0.96540 0.92291 0.83219 0.81509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 14.31 67.78 0.97 -0.67 16 2 C -0.18 -2.43 9.90 25.64 0.25 -2.18 16 3 C 0.09 1.54 5.89 71.24 0.42 1.96 16 4 O -0.35 -7.70 9.46 -56.27 -0.53 -8.23 16 5 C 0.52 12.97 7.90 70.33 0.56 13.53 16 6 O -0.52 -14.61 16.14 19.96 0.32 -14.29 16 7 C -0.09 -2.21 5.87 -20.10 -0.12 -2.33 16 8 C -0.08 -1.87 9.60 22.53 0.22 -1.65 16 9 C -0.03 -0.85 9.50 22.23 0.21 -0.64 16 10 C -0.65 -19.73 5.95 22.33 0.13 -19.59 16 11 S 2.71 94.51 5.74 -56.49 -0.32 94.18 16 12 O -0.98 -34.72 17.27 -128.00 -2.21 -36.93 16 13 O -0.99 -40.59 16.73 -128.00 -2.14 -42.73 16 14 N -1.10 -42.10 5.99 -190.78 -1.14 -43.24 16 15 C 0.26 12.26 5.98 85.63 0.51 12.77 16 16 C -0.55 -28.44 9.27 25.60 0.24 -28.21 16 17 H 0.07 3.64 7.65 -2.91 -0.02 3.62 16 18 C 0.01 0.50 5.46 84.65 0.46 0.96 16 19 N -0.92 -51.69 13.29 21.45 0.28 -51.40 16 20 Si 0.97 41.41 29.54 68.60 2.03 43.43 16 21 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 22 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 24 C -0.04 -1.22 9.50 22.23 0.21 -1.01 16 25 C -0.08 -1.98 9.62 22.54 0.22 -1.77 16 26 H 0.13 0.93 8.06 -2.91 -0.02 0.90 16 27 H 0.11 0.98 7.90 -2.91 -0.02 0.96 16 28 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 29 H 0.08 1.33 7.86 -2.39 -0.02 1.31 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.16 3.33 7.65 -2.91 -0.02 3.31 16 32 H 0.17 3.65 7.60 -2.91 -0.02 3.63 16 33 H 0.42 14.42 8.54 -96.74 -0.83 13.59 16 34 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.02 0.87 7.75 -2.39 -0.02 0.85 16 36 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 37 H 0.15 4.46 7.60 -2.91 -0.02 4.43 16 38 H 0.17 3.48 7.61 -2.91 -0.02 3.46 16 Total: -1.00 -67.89 355.06 0.83 -67.06 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.27 Total: 20.97 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 4.28 Total: -28.83 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -0.86 Total: -94.64 kcal Atomic # 8 Polarization: -97.62 SS G_CDS: -4.56 Total: -102.18 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 94.51 SS G_CDS: -0.32 Total: 94.18 kcal Total: -67.89 0.83 -67.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057883627.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.617 kcal (2) G-P(sol) polarization free energy of solvation -67.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds