Wall clock time and date at job start Tue Mar 31 2020 14:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47431 * 2 1 4 4 C 1.50706 * 109.46960 * 119.99968 * 2 1 3 5 5 H 1.08003 * 119.99875 * 94.45290 * 4 2 1 6 6 C 1.37873 * 120.00018 * 274.44750 * 4 2 1 7 7 N 1.31509 * 120.00138 * 174.52279 * 6 4 2 8 8 Si 1.86806 * 119.99987 * 354.52369 * 6 4 2 9 9 H 1.48493 * 109.47192 * 275.26653 * 8 6 4 10 10 H 1.48504 * 109.47188 * 35.26650 * 8 6 4 11 11 H 1.48504 * 109.46892 * 155.26418 * 8 6 4 12 12 N 1.46496 * 109.46980 * 239.99847 * 2 1 3 13 13 C 1.46497 * 120.00485 * 299.99743 * 12 2 1 14 14 S 1.65603 * 119.99729 * 120.00159 * 12 2 1 15 15 O 1.42106 * 104.27389 * 206.06664 * 14 12 2 16 16 O 1.42093 * 104.27848 * 333.92668 * 14 12 2 17 17 C 1.81399 * 104.45063 * 90.00155 * 14 12 2 18 18 C 1.52597 * 109.24113 * 305.55725 * 17 14 12 19 19 C 1.53052 * 109.97713 * 169.67560 * 18 17 14 20 20 S 1.81672 * 108.96671 * 63.70560 * 19 18 17 21 21 O 1.42102 * 108.66081 * 191.35222 * 20 19 18 22 22 O 1.42101 * 108.75123 * 60.04160 * 20 19 18 23 23 C 1.81673 * 101.30816 * 305.68201 * 20 19 18 24 24 C 1.52587 * 109.24584 * 184.44020 * 17 14 12 25 25 H 1.08996 * 109.46599 * 55.17958 * 1 2 3 26 26 H 1.08995 * 109.46881 * 175.17886 * 1 2 3 27 27 H 1.08996 * 109.47003 * 295.18080 * 1 2 3 28 28 H 0.97000 * 120.00296 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.46713 * 89.99698 * 13 12 2 30 30 H 1.08997 * 109.47978 * 210.00439 * 13 12 2 31 31 H 1.09005 * 109.46948 * 330.00238 * 13 12 2 32 32 H 1.09001 * 109.24214 * 64.99606 * 17 14 12 33 33 H 1.09004 * 109.37920 * 289.87316 * 18 17 14 34 34 H 1.08998 * 109.38387 * 49.55638 * 18 17 14 35 35 H 1.08991 * 109.58232 * 303.85313 * 19 18 17 36 36 H 1.08998 * 109.62488 * 183.58351 * 19 18 17 37 37 H 1.09001 * 109.54580 * 294.44367 * 23 20 19 38 38 H 1.09001 * 109.62693 * 174.20669 * 23 20 19 39 39 H 1.09001 * 109.38195 * 310.44549 * 24 17 14 40 40 H 1.09003 * 109.38413 * 70.22974 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.2808 -1.7605 1.1842 6 6 2.1748 -0.0199 2.4153 7 7 2.5093 -0.6608 3.5139 8 14 1.8928 1.8262 2.4602 9 1 3.1392 2.5272 2.0602 10 1 0.8005 2.1831 1.5195 11 1 1.5143 2.2358 3.8366 12 7 2.0183 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 16 2.9704 0.1142 -2.2862 15 8 2.7433 -0.5613 -3.5156 16 8 2.6122 1.4796 -2.1234 17 6 4.6649 -0.1730 -1.7059 18 6 4.7769 0.2596 -0.2468 19 6 6.1131 -0.2069 0.3359 20 16 7.4652 0.6215 -0.5506 21 8 8.6915 -0.0023 -0.1949 22 8 7.3262 2.0261 -0.3863 23 6 7.0750 0.1964 -2.2732 24 6 5.6358 0.6188 -2.5769 25 1 -0.3632 0.5868 -0.8436 26 1 -0.3633 -1.0240 -0.0864 27 1 -0.3633 0.4372 0.9300 28 1 2.6092 -0.1751 4.3475 29 1 0.7376 -2.1444 -1.9993 30 1 2.4629 -2.5820 -1.9863 31 1 1.5296 -2.5969 -0.4708 32 1 4.8963 -1.2352 -1.7843 33 1 4.7145 1.3462 -0.1859 34 1 3.9600 -0.1808 0.3248 35 1 6.2065 -1.2863 0.2170 36 1 6.1602 0.0490 1.3943 37 1 7.1770 -0.8795 -2.4154 38 1 7.7577 0.7191 -2.9431 39 1 5.4169 0.4285 -3.6276 40 1 5.5217 1.6830 -2.3706 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094992.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:36 Heat of formation + Delta-G solvation = -166.322899 kcal Electronic energy + Delta-G solvation = -26065.652141 eV Core-core repulsion = 22327.138649 eV Total energy + Delta-G solvation = -3738.513492 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.74630 -38.23675 -38.02518 -37.67677 -37.10600 -37.00851 -34.48210 -32.85589 -31.64139 -29.13261 -27.33717 -26.95646 -24.69902 -22.82682 -22.10983 -19.88237 -19.76626 -19.14738 -18.30331 -18.21233 -17.58566 -17.35588 -17.16111 -16.74053 -16.23230 -15.52890 -15.42913 -15.06107 -14.68887 -14.47666 -14.36211 -14.32421 -14.10314 -13.94949 -13.46326 -13.41747 -13.27769 -13.20509 -13.11870 -13.04595 -12.99384 -12.89846 -12.63487 -12.53561 -12.35278 -12.30649 -12.08505 -11.88678 -11.74188 -11.48163 -11.16337 -10.95312 -10.66610 -9.62334 -8.29422 -6.29012 -0.95170 -0.74286 1.31359 1.41215 1.46888 1.69453 1.72134 2.32545 2.66517 2.78088 2.91171 3.04485 3.07800 3.27572 3.51719 3.54747 3.81863 3.97771 4.06976 4.19294 4.22882 4.41968 4.51292 4.57085 4.71630 4.77157 4.80393 4.82317 4.92200 4.94131 5.02368 5.20705 5.24942 5.37252 5.50023 5.54766 5.94569 6.36644 6.78402 7.34547 8.83829 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.007091 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.110715 B = 3947.532532 C = 5247.122318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.233 3.767 3 H 0.047 0.953 4 C -0.506 4.506 5 H 0.074 0.926 6 C 0.049 3.951 7 N -0.922 5.922 8 Si 0.870 3.130 9 H -0.264 1.264 10 H -0.245 1.245 11 H -0.287 1.287 12 N -0.985 5.985 13 C 0.094 3.906 14 S 2.608 3.392 15 O -0.974 6.974 16 O -0.989 6.989 17 C -0.603 4.603 18 C -0.134 4.134 19 C -0.578 4.578 20 S 2.408 3.592 21 O -0.978 6.978 22 O -0.982 6.982 23 C -0.568 4.568 24 C -0.112 4.112 25 H 0.039 0.961 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.266 0.734 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.190 0.810 33 H 0.077 0.923 34 H 0.130 0.870 35 H 0.166 0.834 36 H 0.131 0.869 37 H 0.177 0.823 38 H 0.169 0.831 39 H 0.126 0.874 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.085 -2.563 -12.093 13.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.127 3.873 3 H 0.065 0.935 4 C -0.545 4.545 5 H 0.092 0.908 6 C -0.152 4.152 7 N -0.561 5.561 8 Si 0.695 3.305 9 H -0.189 1.189 10 H -0.168 1.168 11 H -0.213 1.213 12 N -0.823 5.823 13 C -0.051 4.051 14 S 2.706 3.294 15 O -0.965 6.965 16 O -0.979 6.979 17 C -0.714 4.714 18 C -0.173 4.173 19 C -0.709 4.709 20 S 2.595 3.405 21 O -0.975 6.975 22 O -0.979 6.979 23 C -0.701 4.701 24 C -0.151 4.151 25 H 0.058 0.942 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.207 0.793 33 H 0.096 0.904 34 H 0.148 0.852 35 H 0.184 0.816 36 H 0.149 0.851 37 H 0.194 0.806 38 H 0.187 0.813 39 H 0.144 0.856 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.497 -1.542 -12.307 14.002 hybrid contribution -0.397 0.309 1.049 1.164 sum 6.100 -1.233 -11.258 12.864 Atomic orbital electron populations 1.22202 0.97068 1.01690 0.99836 1.18951 0.92692 0.92508 0.83105 0.93528 1.21280 1.42781 0.98064 0.92368 0.90796 1.25294 0.94528 0.99869 0.95527 1.69944 1.48781 1.37153 1.00178 0.86930 0.80978 0.84457 0.78128 1.18943 1.16797 1.21307 1.57271 1.64306 1.22705 1.38014 1.21496 1.01150 0.80048 1.02415 1.04970 0.77275 0.73505 0.73681 1.93537 1.84740 1.75476 1.42716 1.93524 1.82112 1.35738 1.86574 1.30583 1.22854 1.13426 1.04497 1.21538 1.00368 1.02918 0.92475 1.30001 1.11771 1.15754 1.13394 1.08048 0.76300 0.75348 0.80787 1.93539 1.42221 1.78422 1.83331 1.93534 1.87328 1.30910 1.86139 1.29953 1.04044 1.15298 1.20841 1.21278 0.90931 1.00863 1.02068 0.94226 0.91658 0.93328 0.92419 0.92697 0.89752 0.90507 0.79300 0.90413 0.85202 0.81567 0.85082 0.80557 0.81290 0.85612 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.65 8.91 71.98 0.64 -5.01 16 2 C 0.23 9.40 1.36 44.25 0.06 9.46 16 3 H 0.05 2.02 4.59 -2.39 -0.01 2.01 16 4 C -0.51 -22.96 6.29 25.60 0.16 -22.80 16 5 H 0.07 3.53 6.89 -2.91 -0.02 3.51 16 6 C 0.05 2.44 5.46 84.65 0.46 2.90 16 7 N -0.92 -49.56 13.96 21.44 0.30 -49.26 16 8 Si 0.87 39.42 26.23 68.60 1.80 41.22 16 9 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.24 -10.60 6.20 99.48 0.62 -9.98 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 12 N -0.99 -33.06 2.58 -520.44 -1.34 -34.40 16 13 C 0.09 2.59 9.13 127.77 1.17 3.76 16 14 S 2.61 81.09 4.77 -56.49 -0.27 80.82 16 15 O -0.97 -31.19 17.09 -127.65 -2.18 -33.37 16 16 O -0.99 -38.02 16.56 -127.65 -2.11 -40.14 16 17 C -0.60 -13.76 2.61 30.32 0.08 -13.68 16 18 C -0.13 -3.96 4.91 30.48 0.15 -3.81 16 19 C -0.58 -14.08 6.35 72.00 0.46 -13.62 16 20 S 2.41 56.43 5.30 -56.49 -0.30 56.13 16 21 O -0.98 -28.08 18.10 -127.38 -2.31 -30.39 16 22 O -0.98 -31.55 17.95 -127.38 -2.29 -33.84 16 23 C -0.57 -7.59 6.35 71.99 0.46 -7.13 16 24 C -0.11 -2.01 5.02 30.47 0.15 -1.86 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 2.27 7.51 -2.39 -0.02 2.26 16 27 H 0.05 1.91 6.83 -2.39 -0.02 1.89 16 28 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.80 7.79 -2.39 -0.02 1.78 16 31 H 0.08 2.24 6.62 -2.38 -0.02 2.22 16 32 H 0.19 2.60 8.09 -2.39 -0.02 2.58 16 33 H 0.08 2.47 8.02 -2.38 -0.02 2.46 16 34 H 0.13 4.55 3.93 -2.39 -0.01 4.54 16 35 H 0.17 2.88 8.14 -2.39 -0.02 2.86 16 36 H 0.13 3.49 8.14 -2.39 -0.02 3.47 16 37 H 0.18 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.17 1.38 8.14 -2.39 -0.02 1.37 16 39 H 0.13 1.61 8.11 -2.39 -0.02 1.59 16 40 H 0.09 1.88 8.01 -2.39 -0.02 1.86 16 Total: -1.00 -73.31 332.90 -3.96 -77.27 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.96 Total: 17.76 kcal Atomic # 6 Polarization: -55.58 SS G_CDS: 3.79 Total: -51.79 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -1.04 Total: -83.66 kcal Atomic # 8 Polarization: -128.85 SS G_CDS: -8.89 Total: -137.73 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 1.80 Total: 41.22 kcal Atomic # 16 Polarization: 137.51 SS G_CDS: -0.57 Total: 136.94 kcal Total: -73.31 -3.96 -77.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094992.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.056 kcal (2) G-P(sol) polarization free energy of solvation -73.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds