Wall clock time and date at job start Tue Mar 31 2020 14:38:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.09005 * 109.47398 * 2 1
4 4 C 1.50709 * 109.47062 * 120.00221 * 2 1 3
5 5 H 1.07993 * 120.00147 * 120.00473 * 4 2 1
6 6 C 1.37874 * 119.99716 * 299.99835 * 4 2 1
7 7 N 1.31510 * 120.00159 * 180.02562 * 6 4 2
8 8 Si 1.86799 * 120.00184 * 0.02562 * 6 4 2
9 9 H 1.48503 * 109.47049 * 89.99753 * 8 6 4
10 10 H 1.48503 * 109.47685 * 209.99688 * 8 6 4
11 11 H 1.48502 * 109.47333 * 330.00157 * 8 6 4
12 12 N 1.46900 * 109.47295 * 239.99719 * 2 1 3
13 13 C 1.46907 * 110.99688 * 85.00174 * 12 2 1
14 14 H 1.08997 * 109.47104 * 324.99916 * 13 12 2
15 15 C 1.53000 * 109.47143 * 84.99937 * 13 12 2
16 16 C 1.52996 * 109.46954 * 204.99747 * 13 12 2
17 17 C 1.53010 * 109.46986 * 65.00406 * 16 13 12
18 18 C 1.50697 * 109.47097 * 179.97438 * 17 16 13
19 19 C 1.38242 * 119.98711 * 89.99554 * 18 17 16
20 20 C 1.38224 * 120.00951 * 179.71980 * 19 18 17
21 21 C 1.38325 * 119.98750 * 0.26296 * 20 19 18
22 22 Br 1.89100 * 120.01208 * 180.02562 * 21 20 19
23 23 C 1.38329 * 119.97885 * 359.97438 * 21 20 19
24 24 C 1.38213 * 119.99239 * 0.02562 * 23 21 20
25 25 H 1.08996 * 109.47263 * 299.99871 * 1 2 3
26 26 H 1.08998 * 109.46950 * 60.00220 * 1 2 3
27 27 H 1.09005 * 109.47398 * 179.97438 * 1 2 3
28 28 H 0.97005 * 120.00391 * 180.02562 * 7 6 4
29 29 H 1.00894 * 111.00089 * 321.05307 * 12 2 1
30 30 H 1.09009 * 109.46796 * 59.99760 * 15 13 12
31 31 H 1.09002 * 109.47390 * 179.97438 * 15 13 12
32 32 H 1.09002 * 109.47228 * 300.00507 * 15 13 12
33 33 H 1.08991 * 109.47647 * 305.00114 * 16 13 12
34 34 H 1.08997 * 109.46879 * 184.99693 * 16 13 12
35 35 H 1.09003 * 109.46877 * 59.99636 * 17 16 13
36 36 H 1.08995 * 109.46596 * 299.99913 * 17 16 13
37 37 H 1.08002 * 119.99955 * 0.02562 * 19 18 17
38 38 H 1.07999 * 120.00721 * 180.27782 * 20 19 18
39 39 H 1.08002 * 120.00215 * 180.02562 * 23 21 20
40 40 H 1.08001 * 119.99687 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7105 1.2305
5 1 2.6532 -1.5885 1.1314
6 6 1.6992 -0.2394 2.4827
7 7 2.1379 -0.8591 3.5565
8 14 0.6247 1.2790 2.6541
9 1 -0.8029 0.8725 2.6997
10 1 0.9757 1.9951 3.9069
11 1 0.8469 2.1764 1.4920
12 7 2.0196 -0.6925 -1.1994
13 6 2.0824 0.2226 -2.3469
14 1 1.2576 0.9329 -2.2907
15 6 3.4111 0.9809 -2.3223
16 6 1.9771 -0.5797 -3.6453
17 6 0.5983 -1.2380 -3.7277
18 6 0.4943 -2.0277 -5.0069
19 6 0.8747 -3.3565 -5.0314
20 6 0.7741 -4.0829 -6.2031
21 6 0.2977 -3.4785 -7.3525
22 35 0.1590 -4.4718 -8.9556
23 6 -0.0782 -2.1475 -7.3286
24 6 0.0228 -1.4220 -6.1566
25 1 -0.3633 0.5138 0.8900
26 1 -0.3633 0.5138 -0.8900
27 1 -0.3634 -1.0277 -0.0005
28 1 1.9033 -0.5279 4.4376
29 1 1.4495 -1.4979 -1.4100
30 1 4.2360 0.2705 -2.3785
31 1 3.4579 1.6596 -3.1740
32 1 3.4862 1.5524 -1.3972
33 1 2.7487 -1.3494 -3.6606
34 1 2.1125 0.0874 -4.4966
35 1 -0.1733 -0.4682 -3.7125
36 1 0.4629 -1.9050 -2.8764
37 1 1.2460 -3.8286 -4.1338
38 1 1.0670 -5.1223 -6.2211
39 1 -0.4505 -1.6753 -8.2257
40 1 -0.2702 -0.3826 -6.1380
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000068613509.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:38:34
Heat of formation + Delta-G solvation = 15.411040 kcal
Electronic energy + Delta-G solvation = -19279.882476 eV
Core-core repulsion = 16333.167310 eV
Total energy + Delta-G solvation = -2946.715166 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 325.074 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-39.69709 -37.51686 -34.48851 -32.94262 -31.50890 -31.28896 -30.57390 -27.96911
-27.61653 -25.08090 -23.88347 -23.05887 -21.11984 -20.56702 -19.69464 -16.90041
-16.64159 -15.90309 -15.45652 -15.22735 -14.89492 -14.17408 -13.85828 -13.74898
-13.41743 -13.13546 -13.02836 -12.73631 -12.32191 -12.24141 -11.79027 -11.61307
-11.55656 -11.46712 -11.20386 -11.00545 -10.88576 -10.64462 -10.54813 -10.53918
-10.16968 -10.04600 -9.48695 -9.26033 -9.11346 -8.73190 -8.56463 -7.41339
-6.03919 -4.00918 0.85816 1.07708 1.37809 3.24846 3.34848 3.37848
3.37927 4.40522 4.50723 4.57449 4.66271 4.92203 5.02015 5.11231
5.19823 5.25905 5.30311 5.32116 5.50856 5.69574 5.76416 5.79378
5.95703 5.96039 6.01643 6.03641 6.16357 6.20856 6.24541 6.33797
6.40858 6.45658 6.56003 6.61092 6.72888 6.80695 7.12200 7.73916
7.94857 8.36435 8.71199 9.07794 9.59143 11.09753
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.033101 B = 0.002257 C = 0.002224
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 845.690468 B =12402.705437 C =12585.205878
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.183 3.817
3 H 0.034 0.966
4 C -0.496 4.496
5 H 0.081 0.919
6 C 0.066 3.934
7 N -0.902 5.902
8 Si 0.885 3.115
9 H -0.281 1.281
10 H -0.297 1.297
11 H -0.270 1.270
12 N -0.668 5.668
13 C 0.080 3.920
14 H 0.034 0.966
15 C -0.137 4.137
16 C -0.111 4.111
17 C -0.091 4.091
18 C -0.053 4.053
19 C -0.110 4.110
20 C -0.088 4.088
21 C -0.099 4.099
22 Br -0.061 7.061
23 C -0.090 4.090
24 C -0.114 4.114
25 H 0.044 0.956
26 H 0.025 0.975
27 H 0.053 0.947
28 H 0.263 0.737
29 H 0.329 0.671
30 H 0.059 0.941
31 H 0.043 0.957
32 H 0.057 0.943
33 H 0.073 0.927
34 H 0.063 0.937
35 H 0.073 0.927
36 H 0.081 0.919
37 H 0.136 0.864
38 H 0.131 0.869
39 H 0.130 0.870
40 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.159 -4.123 -26.406 27.220
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.242 4.242
2 C 0.074 3.926
3 H 0.052 0.948
4 C -0.535 4.535
5 H 0.099 0.901
6 C -0.135 4.135
7 N -0.541 5.541
8 Si 0.716 3.284
9 H -0.208 1.208
10 H -0.225 1.225
11 H -0.195 1.195
12 N -0.300 5.300
13 C -0.031 4.031
14 H 0.052 0.948
15 C -0.194 4.194
16 C -0.149 4.149
17 C -0.129 4.129
18 C -0.054 4.054
19 C -0.129 4.129
20 C -0.108 4.108
21 C -0.179 4.179
22 Br 0.025 6.975
23 C -0.110 4.110
24 C -0.133 4.133
25 H 0.063 0.937
26 H 0.044 0.956
27 H 0.072 0.928
28 H 0.073 0.927
29 H 0.148 0.852
30 H 0.078 0.922
31 H 0.062 0.938
32 H 0.076 0.924
33 H 0.091 0.909
34 H 0.082 0.918
35 H 0.092 0.908
36 H 0.100 0.900
37 H 0.153 0.847
38 H 0.149 0.851
39 H 0.148 0.852
40 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -4.533 -4.416 -26.650 27.391
hybrid contribution -1.662 1.130 0.405 2.050
sum -6.195 -3.287 -26.245 27.165
Atomic orbital electron populations
1.22867 1.01719 1.00763 0.98803 1.19662 0.88322 0.95165 0.89495
0.94833 1.20996 1.31045 1.13681 0.87769 0.90084 1.24945 0.96024
0.96570 0.95928 1.69883 1.45982 1.40398 0.97821 0.86908 0.80589
0.84051 0.76844 1.20845 1.22483 1.19510 1.60710 1.57972 1.08639
1.02686 1.21506 0.97000 0.94306 0.90261 0.94770 1.21762 0.97495
0.99462 1.00729 1.21749 0.95786 0.99713 0.97688 1.20803 0.98776
0.99133 0.94143 1.20143 0.95492 0.94106 0.95646 1.21191 0.99705
0.93894 0.98072 1.21125 0.98010 1.00266 0.91382 1.21742 1.07980
0.95582 0.92553 1.96697 1.97510 1.72869 1.30463 1.21072 0.98837
0.92250 0.98847 1.21088 1.00243 1.00123 0.91871 0.93722 0.95567
0.92826 0.92734 0.85156 0.92228 0.93793 0.92399 0.90867 0.91807
0.90845 0.90043 0.84663 0.85068 0.85246 0.85205
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.82 8.62 37.15 0.32 -3.50 16
2 C 0.18 4.18 1.98 -68.86 -0.14 4.04 16
3 H 0.03 0.81 6.17 -51.93 -0.32 0.49 16
4 C -0.50 -13.82 9.42 -34.44 -0.32 -14.14 16
5 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16
6 C 0.07 1.90 5.45 -17.82 -0.10 1.81 16
7 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16
8 Si 0.89 21.83 24.37 -169.99 -4.14 17.69 16
9 H -0.28 -6.77 6.87 56.52 0.39 -6.38 16
10 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16
11 H -0.27 -6.37 6.53 56.52 0.37 -6.00 16
12 N -0.67 -12.82 6.04 -100.95 -0.61 -13.43 16
13 C 0.08 1.24 2.46 -67.71 -0.17 1.07 16
14 H 0.03 0.55 7.11 -51.93 -0.37 0.18 16
15 C -0.14 -2.10 9.40 37.16 0.35 -1.75 16
16 C -0.11 -1.36 4.79 -26.73 -0.13 -1.49 16
17 C -0.09 -1.02 5.17 -27.88 -0.14 -1.16 16
18 C -0.05 -0.56 5.13 -104.62 -0.54 -1.10 16
19 C -0.11 -1.12 9.70 -39.59 -0.38 -1.51 16
20 C -0.09 -0.87 9.79 -39.55 -0.39 -1.25 16
21 C -0.10 -0.99 6.22 -39.52 -0.25 -1.23 16
22 Br -0.06 -0.55 33.70 -68.01 -2.29 -2.84 16
23 C -0.09 -0.85 9.79 -39.56 -0.39 -1.23 16
24 C -0.11 -1.09 9.70 -39.59 -0.38 -1.48 16
25 H 0.04 1.00 3.27 -51.93 -0.17 0.83 16
26 H 0.03 0.47 7.43 -51.93 -0.39 0.08 16
27 H 0.05 1.08 8.13 -51.93 -0.42 0.66 16
28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16
29 H 0.33 5.87 6.21 -39.29 -0.24 5.62 16
30 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16
31 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16
32 H 0.06 1.00 7.43 -51.93 -0.39 0.62 16
33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
35 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16
36 H 0.08 0.97 6.37 -51.93 -0.33 0.64 16
37 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16
38 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16
39 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16
40 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16
LS Contribution 337.57 15.07 5.09 5.09
Total: -1.00 -29.82 337.57 -9.87 -39.69
By element:
Atomic # 1 Polarization: 9.57 SS G_CDS: -6.03 Total: 3.54 kcal
Atomic # 6 Polarization: -20.27 SS G_CDS: -2.65 Total: -22.92 kcal
Atomic # 7 Polarization: -40.40 SS G_CDS: 0.16 Total: -40.24 kcal
Atomic # 14 Polarization: 21.83 SS G_CDS: -4.14 Total: 17.69 kcal
Atomic # 35 Polarization: -0.55 SS G_CDS: -2.29 Total: -2.84 kcal
Total LS contribution 5.09 Total: 5.09 kcal
Total: -29.82 -9.87 -39.69 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000068613509.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.100 kcal
(2) G-P(sol) polarization free energy of solvation -29.818 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.281 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.689 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.411 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds