Wall clock time and date at job start Tue Mar 31 2020 14:38:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.09005 * 109.47398 * 2 1
4 4 C 1.50709 * 109.47062 * 120.00221 * 2 1 3
5 5 H 1.07993 * 120.00147 * 120.00473 * 4 2 1
6 6 C 1.37874 * 119.99716 * 299.99835 * 4 2 1
7 7 N 1.31510 * 120.00159 * 180.02562 * 6 4 2
8 8 Si 1.86799 * 120.00184 * 0.02562 * 6 4 2
9 9 H 1.48503 * 109.47049 * 89.99753 * 8 6 4
10 10 H 1.48503 * 109.47685 * 209.99688 * 8 6 4
11 11 H 1.48502 * 109.47333 * 330.00157 * 8 6 4
12 12 N 1.46900 * 109.47295 * 239.99719 * 2 1 3
13 13 C 1.46907 * 110.99688 * 85.00174 * 12 2 1
14 14 H 1.08997 * 109.47104 * 324.99916 * 13 12 2
15 15 C 1.53000 * 109.47143 * 84.99937 * 13 12 2
16 16 C 1.52996 * 109.46954 * 204.99747 * 13 12 2
17 17 C 1.53010 * 109.46986 * 65.00406 * 16 13 12
18 18 C 1.50697 * 109.47097 * 179.97438 * 17 16 13
19 19 C 1.38242 * 119.98711 * 89.99554 * 18 17 16
20 20 C 1.38224 * 120.00951 * 179.71980 * 19 18 17
21 21 C 1.38325 * 119.98750 * 0.26296 * 20 19 18
22 22 Br 1.89100 * 120.01208 * 180.02562 * 21 20 19
23 23 C 1.38329 * 119.97885 * 359.97438 * 21 20 19
24 24 C 1.38213 * 119.99239 * 0.02562 * 23 21 20
25 25 H 1.08996 * 109.47263 * 299.99871 * 1 2 3
26 26 H 1.08998 * 109.46950 * 60.00220 * 1 2 3
27 27 H 1.09005 * 109.47398 * 179.97438 * 1 2 3
28 28 H 0.97005 * 120.00391 * 180.02562 * 7 6 4
29 29 H 1.00894 * 111.00089 * 321.05307 * 12 2 1
30 30 H 1.09009 * 109.46796 * 59.99760 * 15 13 12
31 31 H 1.09002 * 109.47390 * 179.97438 * 15 13 12
32 32 H 1.09002 * 109.47228 * 300.00507 * 15 13 12
33 33 H 1.08991 * 109.47647 * 305.00114 * 16 13 12
34 34 H 1.08997 * 109.46879 * 184.99693 * 16 13 12
35 35 H 1.09003 * 109.46877 * 59.99636 * 17 16 13
36 36 H 1.08995 * 109.46596 * 299.99913 * 17 16 13
37 37 H 1.08002 * 119.99955 * 0.02562 * 19 18 17
38 38 H 1.07999 * 120.00721 * 180.27782 * 20 19 18
39 39 H 1.08002 * 120.00215 * 180.02562 * 23 21 20
40 40 H 1.08001 * 119.99687 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7105 1.2305
5 1 2.6532 -1.5885 1.1314
6 6 1.6992 -0.2394 2.4827
7 7 2.1379 -0.8591 3.5565
8 14 0.6247 1.2790 2.6541
9 1 -0.8029 0.8725 2.6997
10 1 0.9757 1.9951 3.9069
11 1 0.8469 2.1764 1.4920
12 7 2.0196 -0.6925 -1.1994
13 6 2.0824 0.2226 -2.3469
14 1 1.2576 0.9329 -2.2907
15 6 3.4111 0.9809 -2.3223
16 6 1.9771 -0.5797 -3.6453
17 6 0.5983 -1.2380 -3.7277
18 6 0.4943 -2.0277 -5.0069
19 6 0.8747 -3.3565 -5.0314
20 6 0.7741 -4.0829 -6.2031
21 6 0.2977 -3.4785 -7.3525
22 35 0.1590 -4.4718 -8.9556
23 6 -0.0782 -2.1475 -7.3286
24 6 0.0228 -1.4220 -6.1566
25 1 -0.3633 0.5138 0.8900
26 1 -0.3633 0.5138 -0.8900
27 1 -0.3634 -1.0277 -0.0005
28 1 1.9033 -0.5279 4.4376
29 1 1.4495 -1.4979 -1.4100
30 1 4.2360 0.2705 -2.3785
31 1 3.4579 1.6596 -3.1740
32 1 3.4862 1.5524 -1.3972
33 1 2.7487 -1.3494 -3.6606
34 1 2.1125 0.0874 -4.4966
35 1 -0.1733 -0.4682 -3.7125
36 1 0.4629 -1.9050 -2.8764
37 1 1.2460 -3.8286 -4.1338
38 1 1.0670 -5.1223 -6.2211
39 1 -0.4505 -1.6753 -8.2257
40 1 -0.2702 -0.3826 -6.1380
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000068613509.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:38:34
Heat of formation + Delta-G solvation = -1.624365 kcal
Electronic energy + Delta-G solvation = -19280.621187 eV
Core-core repulsion = 16333.167310 eV
Total energy + Delta-G solvation = -2947.453877 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 325.074 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-40.46465 -38.87342 -35.86628 -34.34646 -33.10296 -32.00176 -31.55147 -29.17529
-28.85791 -27.09056 -24.85562 -23.77769 -22.35565 -21.83566 -21.04623 -18.72597
-17.59717 -17.12215 -16.66943 -16.45144 -16.02374 -15.61365 -14.97925 -14.71566
-14.54629 -14.32775 -14.24195 -14.10874 -13.91864 -13.60589 -13.14396 -13.00860
-12.73827 -12.54290 -12.43559 -12.22820 -12.05367 -11.94604 -11.69872 -11.61666
-11.44515 -11.27619 -11.25407 -11.08103 -10.73003 -9.97980 -9.49354 -8.94413
-8.24994 -6.26653 0.10850 0.35734 0.65667 1.29794 1.35755 1.45662
2.33487 2.63640 3.09590 3.54553 3.70800 3.79873 3.98629 4.16002
4.16933 4.30271 4.42160 4.46831 4.52151 4.58095 4.64239 4.70436
4.71456 4.85667 4.87969 4.91992 4.99088 5.07254 5.12916 5.24037
5.25012 5.28987 5.37529 5.44466 5.49149 5.65200 5.72915 5.87876
6.11746 6.76446 6.80549 6.89056 7.38784 8.92625
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.033101 B = 0.002257 C = 0.002224
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 845.690468 B =12402.705437 C =12585.205878
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.189 3.811
3 H 0.026 0.974
4 C -0.500 4.500
5 H 0.034 0.966
6 C 0.006 3.994
7 N -0.953 5.953
8 Si 0.952 3.048
9 H -0.267 1.267
10 H -0.301 1.301
11 H -0.250 1.250
12 N -0.682 5.682
13 C 0.079 3.921
14 H 0.040 0.960
15 C -0.136 4.136
16 C -0.100 4.100
17 C -0.085 4.085
18 C -0.062 4.062
19 C -0.120 4.120
20 C -0.096 4.096
21 C -0.109 4.109
22 Br -0.056 7.056
23 C -0.094 4.094
24 C -0.114 4.114
25 H 0.033 0.967
26 H 0.061 0.939
27 H 0.055 0.945
28 H 0.264 0.736
29 H 0.336 0.664
30 H 0.051 0.949
31 H 0.075 0.925
32 H 0.031 0.969
33 H 0.065 0.935
34 H 0.084 0.916
35 H 0.082 0.918
36 H 0.069 0.931
37 H 0.136 0.864
38 H 0.140 0.860
39 H 0.146 0.854
40 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.700 -2.566 -28.791 29.671
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.236 4.236
2 C 0.079 3.921
3 H 0.044 0.956
4 C -0.539 4.539
5 H 0.053 0.947
6 C -0.190 4.190
7 N -0.595 5.595
8 Si 0.779 3.221
9 H -0.193 1.193
10 H -0.229 1.229
11 H -0.174 1.174
12 N -0.315 5.315
13 C -0.031 4.031
14 H 0.058 0.942
15 C -0.194 4.194
16 C -0.138 4.138
17 C -0.123 4.123
18 C -0.062 4.062
19 C -0.139 4.139
20 C -0.115 4.115
21 C -0.189 4.189
22 Br 0.030 6.970
23 C -0.113 4.113
24 C -0.133 4.133
25 H 0.051 0.949
26 H 0.080 0.920
27 H 0.074 0.926
28 H 0.073 0.927
29 H 0.156 0.844
30 H 0.070 0.930
31 H 0.094 0.906
32 H 0.051 0.949
33 H 0.083 0.917
34 H 0.103 0.897
35 H 0.101 0.899
36 H 0.088 0.912
37 H 0.154 0.846
38 H 0.158 0.842
39 H 0.164 0.836
40 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges -6.077 -2.866 -29.074 29.840
hybrid contribution -1.087 0.543 1.068 1.618
sum -7.164 -2.324 -28.006 29.001
Atomic orbital electron populations
1.22727 0.99601 1.01360 0.99911 1.19385 0.89783 0.94005 0.88905
0.95646 1.21325 1.29929 1.12368 0.90296 0.94748 1.25818 0.97685
1.00024 0.95465 1.70052 1.48190 1.42708 0.98509 0.85823 0.79068
0.80089 0.77114 1.19328 1.22939 1.17384 1.60539 1.58214 1.09587
1.03157 1.21610 0.97102 0.94136 0.90238 0.94244 1.21776 0.97268
0.99588 1.00794 1.21627 0.96319 0.99452 0.96352 1.20707 0.98272
0.99132 0.94150 1.20118 0.96301 0.94108 0.95690 1.21305 1.00019
0.94231 0.98367 1.21271 0.98096 1.00812 0.91367 1.21925 1.08030
0.96103 0.92793 1.96700 1.97487 1.72841 1.30018 1.21315 0.98415
0.92052 0.99532 1.21306 0.99569 1.01023 0.91394 0.94859 0.91971
0.92638 0.92728 0.84382 0.93012 0.90600 0.94940 0.91672 0.89706
0.89905 0.91225 0.84575 0.84225 0.83616 0.83309
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -6.96 8.62 71.98 0.62 -6.34 16
2 C 0.19 8.49 1.98 44.17 0.09 8.57 16
3 H 0.03 1.20 6.17 -2.38 -0.01 1.18 16
4 C -0.50 -28.54 9.42 25.60 0.24 -28.30 16
5 H 0.03 2.22 8.06 -2.91 -0.02 2.19 16
6 C 0.01 0.37 5.45 84.65 0.46 0.83 16
7 N -0.95 -60.18 13.96 21.45 0.30 -59.89 16
8 Si 0.95 44.84 24.37 68.60 1.67 46.51 16
9 H -0.27 -11.91 6.87 99.48 0.68 -11.23 16
10 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16
11 H -0.25 -10.86 6.53 99.48 0.65 -10.21 16
12 N -0.68 -25.68 6.04 -473.30 -2.86 -28.54 16
13 C 0.08 2.28 2.46 44.91 0.11 2.39 16
14 H 0.04 1.13 7.11 -2.39 -0.02 1.11 16
15 C -0.14 -3.96 9.40 71.98 0.68 -3.29 16
16 C -0.10 -2.17 4.79 30.60 0.15 -2.03 16
17 C -0.09 -1.69 5.17 29.85 0.15 -1.53 16
18 C -0.06 -1.15 5.13 -19.86 -0.10 -1.26 16
19 C -0.12 -2.32 9.70 22.27 0.22 -2.10 16
20 C -0.10 -1.76 9.79 22.29 0.22 -1.54 16
21 C -0.11 -1.98 6.22 22.31 0.14 -1.84 16
22 Br -0.06 -0.92 33.70 -20.37 -0.69 -1.61 16
23 C -0.09 -1.52 9.79 22.29 0.22 -1.30 16
24 C -0.11 -1.85 9.70 22.26 0.22 -1.64 16
25 H 0.03 1.38 3.27 -2.39 -0.01 1.37 16
26 H 0.06 1.99 7.43 -2.39 -0.02 1.97 16
27 H 0.05 2.13 8.13 -2.38 -0.02 2.11 16
28 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16
29 H 0.34 11.75 6.21 -89.70 -0.56 11.19 16
30 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16
31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16
32 H 0.03 1.08 7.43 -2.39 -0.02 1.07 16
33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16
34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16
35 H 0.08 1.50 8.09 -2.39 -0.02 1.48 16
36 H 0.07 1.55 6.37 -2.39 -0.02 1.53 16
37 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16
38 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16
39 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16
40 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16
Total: -1.00 -65.61 337.57 2.22 -63.39
By element:
Atomic # 1 Polarization: 19.12 SS G_CDS: 0.39 Total: 19.51 kcal
Atomic # 6 Polarization: -42.78 SS G_CDS: 3.40 Total: -39.38 kcal
Atomic # 7 Polarization: -85.87 SS G_CDS: -2.56 Total: -88.43 kcal
Atomic # 14 Polarization: 44.84 SS G_CDS: 1.67 Total: 46.51 kcal
Atomic # 35 Polarization: -0.92 SS G_CDS: -0.69 Total: -1.61 kcal
Total: -65.61 2.22 -63.39 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000068613509.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.764 kcal
(2) G-P(sol) polarization free energy of solvation -65.606 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.842 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.388 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.624 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds