Wall clock time and date at job start Tue Mar 31 2020 14:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47199 * 2 1 4 4 C 1.52997 * 109.47207 * 239.99845 * 2 1 3 5 5 C 1.53003 * 109.47351 * 175.00089 * 4 2 1 6 6 C 1.50697 * 109.47534 * 180.02562 * 5 4 2 7 7 C 1.38247 * 119.98604 * 269.72694 * 6 5 4 8 8 C 1.38220 * 120.00485 * 179.76476 * 7 6 5 9 9 C 1.38322 * 119.98990 * 0.50900 * 8 7 6 10 10 Br 1.89109 * 120.00853 * 179.72463 * 9 8 7 11 11 C 1.38317 * 119.98193 * 359.74331 * 9 8 7 12 12 C 1.38216 * 119.99126 * 0.02562 * 11 9 8 13 13 N 1.46897 * 109.47090 * 120.00197 * 2 1 3 14 14 C 1.46901 * 110.99930 * 274.69928 * 13 2 1 15 15 H 1.09003 * 109.47229 * 32.39660 * 14 13 2 16 16 C 1.52995 * 109.47181 * 152.39485 * 14 13 2 17 17 C 1.50695 * 109.47197 * 272.39756 * 14 13 2 18 18 H 1.08008 * 120.00008 * 359.97438 * 17 14 13 19 19 C 1.37877 * 120.00268 * 180.02562 * 17 14 13 20 20 N 1.31514 * 120.00045 * 179.97438 * 19 17 14 21 21 Si 1.86793 * 120.00113 * 359.97438 * 19 17 14 22 22 H 1.48507 * 109.46940 * 89.99955 * 21 19 17 23 23 H 1.48497 * 109.47537 * 210.00520 * 21 19 17 24 24 H 1.48506 * 109.46918 * 330.00476 * 21 19 17 25 25 H 1.09000 * 109.47122 * 296.59552 * 1 2 3 26 26 H 1.09010 * 109.46766 * 56.59404 * 1 2 3 27 27 H 1.08997 * 109.47282 * 176.58888 * 1 2 3 28 28 H 1.08997 * 109.47428 * 295.00529 * 4 2 1 29 29 H 1.09005 * 109.47099 * 55.00078 * 4 2 1 30 30 H 1.09006 * 109.47120 * 300.00414 * 5 4 2 31 31 H 1.08998 * 109.46736 * 60.00156 * 5 4 2 32 32 H 1.07997 * 119.99383 * 0.02562 * 7 6 5 33 33 H 1.08002 * 120.00086 * 180.23006 * 8 7 6 34 34 H 1.08001 * 120.00583 * 179.97438 * 11 9 8 35 35 H 1.08007 * 119.99655 * 179.97438 * 12 11 9 36 36 H 1.00896 * 111.00323 * 150.74082 * 13 2 1 37 37 H 1.09004 * 109.47477 * 179.65736 * 16 14 13 38 38 H 1.08999 * 109.47631 * 299.66190 * 16 14 13 39 39 H 1.09001 * 109.47107 * 59.66605 * 16 14 13 40 40 H 0.97001 * 119.99993 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 6 4.0672 -1.3232 -2.5444 7 6 4.4013 -2.6632 -2.4812 8 6 4.8574 -3.3159 -3.6109 9 6 4.9897 -2.6256 -4.8023 10 35 5.6211 -3.5161 -6.3464 11 6 4.6603 -1.2836 -4.8637 12 6 4.1996 -0.6328 -3.7347 13 7 2.0196 -0.6925 1.1994 14 6 2.0892 0.2243 2.3451 15 1 1.2950 0.9666 2.2652 16 6 1.9184 -0.5676 3.6430 17 6 3.4267 0.9185 2.3525 18 1 4.1527 0.7002 1.5832 19 6 3.7240 1.8316 3.3418 20 7 4.8915 2.4371 3.3485 21 14 2.4688 2.2087 4.6727 22 1 2.6648 1.2806 5.8153 23 1 2.6441 3.6086 5.1362 24 1 1.0994 2.0366 4.1246 25 1 -0.3633 0.4601 0.9189 26 1 -0.3633 0.5659 -0.8580 27 1 -0.3634 -1.0258 -0.0611 28 1 1.7516 -1.7715 -1.2056 29 1 1.6054 -0.2617 -2.1370 30 1 3.8533 0.4370 -1.3573 31 1 3.9994 -1.0729 -0.4259 32 1 4.3018 -3.2011 -1.5500 33 1 5.1149 -4.3637 -3.5624 34 1 4.7637 -0.7441 -5.7936 35 1 3.9428 0.4151 -3.7825 36 1 2.9149 -1.1247 1.0272 37 1 1.9761 0.1118 4.4935 38 1 0.9485 -1.0649 3.6404 39 1 2.7092 -1.3138 3.7200 40 1 5.1008 3.0793 4.0447 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068613516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:36 Heat of formation + Delta-G solvation = -4.085278 kcal Electronic energy + Delta-G solvation = -19390.324543 eV Core-core repulsion = 16442.763954 eV Total energy + Delta-G solvation = -2947.560590 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.46959 -38.76405 -35.86889 -34.33197 -33.13895 -32.01776 -31.56305 -29.26775 -28.85134 -26.99042 -24.85132 -23.78686 -22.16940 -21.82524 -21.02645 -19.00153 -17.58409 -17.12676 -16.70773 -16.35008 -16.03951 -15.59774 -14.89418 -14.78284 -14.55137 -14.31490 -14.21947 -14.07685 -13.93415 -13.43355 -13.26319 -13.00205 -12.75649 -12.47986 -12.44143 -12.23415 -12.04122 -11.86122 -11.69067 -11.61387 -11.44712 -11.25919 -11.25777 -11.17631 -10.73052 -9.99233 -9.50300 -9.04621 -8.31331 -6.35458 0.09931 0.34420 0.63942 1.30531 1.35429 1.45537 2.31014 2.62619 3.05145 3.57309 3.70661 3.78124 3.97376 4.15257 4.19378 4.31617 4.41456 4.48515 4.60274 4.68365 4.70461 4.78628 4.83599 4.87903 4.95604 4.99818 5.03260 5.10711 5.18100 5.22206 5.26023 5.28716 5.34660 5.47124 5.56203 5.60477 5.65673 5.85766 6.15322 6.46511 6.69459 6.87274 7.33697 8.84679 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.027537 B = 0.002448 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.567249 B =11433.853571 C =11849.251174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.079 3.921 3 H 0.019 0.981 4 C -0.095 4.095 5 C -0.082 4.082 6 C -0.062 4.062 7 C -0.118 4.118 8 C -0.091 4.091 9 C -0.109 4.109 10 Br -0.052 7.052 11 C -0.092 4.092 12 C -0.119 4.119 13 N -0.672 5.672 14 C 0.181 3.819 15 H 0.023 0.977 16 C -0.135 4.135 17 C -0.539 4.539 18 H 0.039 0.961 19 C 0.015 3.985 20 N -0.947 5.947 21 Si 0.949 3.051 22 H -0.267 1.267 23 H -0.302 1.302 24 H -0.250 1.250 25 H 0.037 0.963 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.334 0.666 37 H 0.028 0.972 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.073 -12.094 -19.419 23.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.031 4.031 3 H 0.037 0.963 4 C -0.133 4.133 5 C -0.120 4.120 6 C -0.062 4.062 7 C -0.136 4.136 8 C -0.111 4.111 9 C -0.188 4.188 10 Br 0.034 6.966 11 C -0.111 4.111 12 C -0.138 4.138 13 N -0.303 5.303 14 C 0.071 3.929 15 H 0.041 0.959 16 C -0.193 4.193 17 C -0.578 4.578 18 H 0.058 0.942 19 C -0.183 4.183 20 N -0.587 5.587 21 Si 0.777 3.223 22 H -0.194 1.194 23 H -0.231 1.231 24 H -0.174 1.174 25 H 0.056 0.944 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.364 -12.567 -19.759 23.657 hybrid contribution 0.823 1.417 1.053 1.948 sum -2.541 -11.150 -18.705 21.924 Atomic orbital electron populations 1.21727 0.93961 1.02209 1.00918 1.21523 0.96088 0.95503 0.89967 0.96290 1.21598 0.93127 1.01603 0.96960 1.20624 0.96772 0.99776 0.94825 1.20115 0.96565 0.94367 0.95172 1.21287 0.99132 0.94152 0.99065 1.21288 0.98080 1.00812 0.90930 1.21911 1.07468 0.96073 0.93347 1.96689 1.87271 1.77836 1.34854 1.21276 0.97570 0.92628 0.99661 1.21268 0.99841 1.00899 0.91819 1.60904 1.32833 1.32164 1.04380 1.19445 0.93616 0.90368 0.89487 0.95862 1.21962 1.00904 0.99473 0.96931 1.22049 1.01278 1.23207 1.11273 0.94242 1.25816 0.96772 0.95450 1.00215 1.70057 1.23802 1.29201 1.35617 0.85852 0.80797 0.75775 0.79895 1.19356 1.23054 1.17416 0.94374 0.91400 0.91554 0.90435 0.90217 0.92251 0.91717 0.84142 0.83620 0.83613 0.84236 0.84775 0.95333 0.92150 0.93182 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 9.41 71.98 0.68 -3.01 16 2 C 0.08 2.62 2.45 44.91 0.11 2.73 16 3 H 0.02 0.75 7.73 -2.39 -0.02 0.73 16 4 C -0.10 -2.49 4.79 30.59 0.15 -2.34 16 5 C -0.08 -2.31 5.18 29.85 0.15 -2.16 16 6 C -0.06 -1.50 5.13 -19.86 -0.10 -1.60 16 7 C -0.12 -2.62 9.70 22.27 0.22 -2.40 16 8 C -0.09 -1.86 9.79 22.29 0.22 -1.65 16 9 C -0.11 -2.24 6.22 22.31 0.14 -2.10 16 10 Br -0.05 -0.94 33.70 -20.37 -0.69 -1.63 16 11 C -0.09 -1.85 9.79 22.28 0.22 -1.64 16 12 C -0.12 -2.63 9.70 22.26 0.22 -2.42 16 13 N -0.67 -25.35 6.06 -473.33 -2.87 -28.22 16 14 C 0.18 8.14 1.96 44.17 0.09 8.23 16 15 H 0.02 1.10 6.19 -2.39 -0.01 1.09 16 16 C -0.14 -5.61 9.00 71.98 0.65 -4.96 16 17 C -0.54 -29.42 8.97 25.60 0.23 -29.19 16 18 H 0.04 2.36 7.95 -2.91 -0.02 2.34 16 19 C 0.02 0.88 5.45 84.65 0.46 1.34 16 20 N -0.95 -58.23 13.96 21.45 0.30 -57.93 16 21 Si 0.95 44.69 24.38 68.60 1.67 46.36 16 22 H -0.27 -12.04 6.86 99.48 0.68 -11.36 16 23 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 24 H -0.25 -11.00 6.53 99.48 0.65 -10.35 16 25 H 0.04 1.18 7.45 -2.39 -0.02 1.17 16 26 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.06 1.87 8.08 -2.38 -0.02 1.85 16 31 H 0.06 2.03 6.37 -2.39 -0.02 2.01 16 32 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 33 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 36 H 0.33 12.72 6.09 -89.70 -0.55 12.17 16 37 H 0.03 1.22 3.26 -2.39 -0.01 1.21 16 38 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 40 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -61.57 338.66 2.23 -59.34 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.40 Total: 23.24 kcal Atomic # 6 Polarization: -44.59 SS G_CDS: 3.42 Total: -41.17 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -2.57 Total: -86.15 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.67 Total: 46.36 kcal Atomic # 35 Polarization: -0.94 SS G_CDS: -0.69 Total: -1.63 kcal Total: -61.57 2.23 -59.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068613516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.256 kcal (2) G-P(sol) polarization free energy of solvation -61.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds