Wall clock time and date at job start Tue Mar 31 2020 13:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97661 * 124.71645 * 10 9 7 12 12 C 1.35240 * 107.86433 * 179.87358 * 11 10 9 13 13 C 1.40432 * 107.86481 * 0.39133 * 12 11 10 14 14 N 1.40087 * 125.97136 * 179.76165 * 13 12 11 15 15 C 1.34782 * 120.00356 * 359.97076 * 14 13 12 16 16 O 1.21603 * 119.99613 * 0.02562 * 15 14 13 17 17 C 1.47550 * 119.99869 * 180.02562 * 15 14 13 18 18 C 1.39740 * 120.13577 * 0.02562 * 17 15 14 19 19 C 1.37757 * 119.94206 * 179.97438 * 18 17 15 20 20 C 1.38706 * 120.21387 * 359.97438 * 19 18 17 21 21 F 1.35110 * 119.86656 * 180.02562 * 20 19 18 22 22 C 1.38664 * 120.27250 * 359.97438 * 20 19 18 23 23 F 1.35104 * 119.97511 * 179.97438 * 22 20 19 24 24 C 1.38380 * 120.05087 * 359.74976 * 22 20 19 25 25 F 1.35099 * 120.10746 * 180.27317 * 24 22 20 26 26 N 1.31225 * 108.04682 * 359.75516 * 13 12 11 27 27 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 29 29 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 30 30 H 1.07998 * 126.06575 * 0.02562 * 11 10 9 31 31 H 1.07989 * 126.06630 * 180.11279 * 12 11 10 32 32 H 0.97004 * 120.00027 * 179.97438 * 14 13 12 33 33 H 1.08001 * 120.03144 * 359.97438 * 18 17 15 34 34 H 1.07997 * 119.89187 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9210 12 6 5.0533 -4.4047 -0.5783 13 6 4.2964 -4.6709 0.5743 14 7 4.2281 -5.8967 1.2488 15 6 4.9307 -6.9546 0.7973 16 8 5.6243 -6.8447 -0.1955 17 6 4.8581 -8.2459 1.5075 18 6 4.0615 -8.3753 2.6483 19 6 3.9963 -9.5829 3.3080 20 6 4.7188 -10.6720 2.8434 21 9 4.6493 -11.8532 3.4956 22 6 5.5113 -10.5538 1.7117 23 9 6.2128 -11.6183 1.2647 24 6 5.5804 -9.3475 1.0371 25 9 6.3478 -9.2326 -0.0689 26 7 3.6647 -3.5705 0.9089 27 1 -0.4850 0.8400 0.0004 28 1 3.8711 -0.6780 -0.9023 29 1 3.8785 -0.6824 0.8776 30 1 5.2842 -2.6013 -1.7657 31 1 5.6843 -5.1081 -1.1011 32 1 3.6750 -5.9843 2.0410 33 1 3.4974 -7.5294 3.0125 34 1 3.3801 -9.6821 4.1893 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078745832.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:31 Heat of formation + Delta-G solvation = -42.705227 kcal Electronic energy + Delta-G solvation = -25754.465417 eV Core-core repulsion = 21240.860498 eV Total energy + Delta-G solvation = -4513.604919 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.21708 -49.61293 -48.86208 -41.01682 -39.99375 -38.45524 -35.07067 -33.42163 -31.88518 -31.21059 -30.88411 -29.50496 -27.29601 -25.03487 -23.81736 -22.81245 -21.93294 -20.54680 -19.90060 -18.97971 -18.38323 -18.15262 -17.27230 -17.20304 -16.98368 -16.41511 -16.27970 -15.95798 -15.58396 -15.45658 -15.14674 -15.05784 -14.87633 -14.61352 -14.41078 -13.72202 -13.68931 -13.17702 -12.71240 -12.62849 -12.48651 -12.43688 -12.38260 -12.12945 -11.25349 -10.94585 -10.62686 -10.28668 -10.07854 -9.88875 -9.60678 -9.55083 -9.52081 -8.81447 -8.31766 -7.65823 -6.28231 -4.31081 -0.23874 0.15311 1.97594 2.34637 2.57836 2.78496 2.93150 3.12684 3.17640 3.20698 3.49972 3.57046 3.59051 3.66109 3.81774 4.00603 4.12908 4.18589 4.74725 4.93719 4.99727 5.09546 5.16454 5.23822 5.35478 5.57954 5.92938 6.00977 6.29080 6.34206 6.42508 6.57227 7.13668 7.19235 7.39869 7.71666 7.93159 8.27056 8.43210 8.80698 9.26446 10.84365 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.028691 B = 0.002394 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.676957 B =11691.409719 C =12432.659513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.077 3.923 3 Si 0.874 3.126 4 H -0.271 1.271 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.086 0.914 9 C 0.231 3.769 10 N -0.316 5.316 11 C 0.054 3.946 12 C -0.282 4.282 13 C 0.258 3.742 14 N -0.620 5.620 15 C 0.565 3.435 16 O -0.494 6.494 17 C -0.149 4.149 18 C -0.035 4.035 19 C -0.140 4.140 20 C 0.125 3.875 21 F -0.114 7.114 22 C 0.023 3.977 23 F -0.112 7.112 24 C 0.162 3.838 25 F -0.091 7.091 26 N -0.293 5.293 27 H 0.269 0.731 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.171 0.829 31 H 0.163 0.837 32 H 0.411 0.589 33 H 0.159 0.841 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.091 -18.960 6.656 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.127 4.127 3 Si 0.700 3.300 4 H -0.197 1.197 5 H -0.189 1.189 6 H -0.206 1.206 7 C -0.574 4.574 8 H 0.104 0.896 9 C 0.112 3.888 10 N -0.098 5.098 11 C -0.095 4.095 12 C -0.313 4.313 13 C 0.004 3.996 14 N -0.268 5.268 15 C 0.351 3.649 16 O -0.367 6.367 17 C -0.153 4.153 18 C -0.054 4.054 19 C -0.159 4.159 20 C 0.104 3.896 21 F -0.092 7.092 22 C 0.001 3.999 23 F -0.091 7.091 24 C 0.140 3.860 25 F -0.069 7.069 26 N -0.123 5.123 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.188 0.812 31 H 0.180 0.820 32 H 0.248 0.752 33 H 0.177 0.823 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 9.641 -18.164 6.715 21.633 hybrid contribution 0.731 0.089 -0.311 0.799 sum 10.372 -18.075 6.404 21.801 Atomic orbital electron populations 1.69868 1.06164 1.27367 1.48998 1.24830 0.94874 0.98815 0.94202 0.86892 0.80244 0.83803 0.79023 1.19681 1.18942 1.20560 1.21095 0.87718 0.95730 1.52882 0.89617 1.20090 0.97519 0.72822 0.98331 1.48654 1.32649 1.10179 1.18319 1.22579 0.95844 0.94618 0.96490 1.21559 1.11427 0.96902 1.01395 1.18988 0.99430 0.86299 0.94846 1.42147 1.47125 1.07326 1.30158 1.17541 0.80462 0.82523 0.84420 1.90826 1.38571 1.83005 1.24313 1.19873 1.02520 0.93732 0.99212 1.21242 0.94544 0.98036 0.91577 1.21110 1.01188 0.90839 1.02781 1.17604 0.97816 0.83216 0.90962 1.91602 1.94562 1.43738 1.79281 1.17398 1.00368 0.84959 0.97139 1.91596 1.76293 1.52756 1.88435 1.17249 0.92242 0.91410 0.85071 1.91686 1.71245 1.96040 1.47880 1.77390 1.23408 0.95414 1.16114 0.92123 0.92786 0.94352 0.81199 0.81982 0.75180 0.82325 0.81861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.96 55.43 0.77 -25.23 16 2 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 19.63 27.47 -169.99 -4.67 14.96 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -14.67 9.79 -34.44 -0.34 -15.01 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 C 0.23 5.27 5.33 -5.20 -0.03 5.24 16 10 N -0.32 -6.83 3.67 -62.56 -0.23 -7.06 16 11 C 0.05 0.99 11.43 -17.24 -0.20 0.79 16 12 C -0.28 -5.19 9.61 -39.82 -0.38 -5.57 16 13 C 0.26 4.77 8.11 -154.45 -1.25 3.52 16 14 N -0.62 -8.51 5.40 -12.07 -0.07 -8.58 16 15 C 0.57 7.56 7.73 -12.46 -0.10 7.46 16 16 O -0.49 -8.26 12.46 5.28 0.07 -8.19 16 17 C -0.15 -1.44 5.88 -104.92 -0.62 -2.05 16 18 C -0.04 -0.21 9.53 -39.20 -0.37 -0.58 16 19 C -0.14 -0.71 10.00 -39.58 -0.40 -1.10 16 20 C 0.12 0.92 7.31 -39.25 -0.29 0.63 16 21 F -0.11 -0.91 17.17 2.25 0.04 -0.87 16 22 C 0.02 0.21 7.30 -39.37 -0.29 -0.08 16 23 F -0.11 -1.19 17.09 2.25 0.04 -1.15 16 24 C 0.16 1.72 7.29 -38.91 -0.28 1.43 16 25 F -0.09 -1.19 15.46 2.25 0.03 -1.16 16 26 N -0.29 -6.29 12.42 31.43 0.39 -5.90 16 27 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.05 1.13 7.12 -51.93 -0.37 0.76 16 29 H 0.04 0.86 7.57 -51.93 -0.39 0.46 16 30 H 0.17 2.45 8.06 -52.49 -0.42 2.03 16 31 H 0.16 2.91 5.91 -52.49 -0.31 2.60 16 32 H 0.41 4.19 6.85 -40.82 -0.28 3.91 16 33 H 0.16 0.53 6.40 -52.49 -0.34 0.19 16 34 H 0.16 0.36 8.06 -52.49 -0.42 -0.07 16 LS Contribution 316.94 15.07 4.78 4.78 Total: -1.00 -33.66 316.94 -5.60 -39.27 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -2.12 Total: 2.45 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -4.63 Total: -3.30 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.87 Total: -46.77 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.07 Total: -8.19 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.11 Total: -3.18 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.67 Total: 14.96 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.66 -5.60 -39.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078745832.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.440 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds