Wall clock time and date at job start Tue Mar 31 2020 13:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97661 * 124.71645 * 10 9 7 12 12 C 1.35240 * 107.86433 * 179.87358 * 11 10 9 13 13 C 1.40432 * 107.86481 * 0.39133 * 12 11 10 14 14 N 1.40087 * 125.97136 * 179.76165 * 13 12 11 15 15 C 1.34782 * 120.00356 * 359.97076 * 14 13 12 16 16 O 1.21603 * 119.99613 * 0.02562 * 15 14 13 17 17 C 1.47550 * 119.99869 * 180.02562 * 15 14 13 18 18 C 1.39740 * 120.13577 * 0.02562 * 17 15 14 19 19 C 1.37757 * 119.94206 * 179.97438 * 18 17 15 20 20 C 1.38706 * 120.21387 * 359.97438 * 19 18 17 21 21 F 1.35110 * 119.86656 * 180.02562 * 20 19 18 22 22 C 1.38664 * 120.27250 * 359.97438 * 20 19 18 23 23 F 1.35104 * 119.97511 * 179.97438 * 22 20 19 24 24 C 1.38380 * 120.05087 * 359.74976 * 22 20 19 25 25 F 1.35099 * 120.10746 * 180.27317 * 24 22 20 26 26 N 1.31225 * 108.04682 * 359.75516 * 13 12 11 27 27 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 29 29 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 30 30 H 1.07998 * 126.06575 * 0.02562 * 11 10 9 31 31 H 1.07989 * 126.06630 * 180.11279 * 12 11 10 32 32 H 0.97004 * 120.00027 * 179.97438 * 14 13 12 33 33 H 1.08001 * 120.03144 * 359.97438 * 18 17 15 34 34 H 1.07997 * 119.89187 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9210 12 6 5.0533 -4.4047 -0.5783 13 6 4.2964 -4.6709 0.5743 14 7 4.2281 -5.8967 1.2488 15 6 4.9307 -6.9546 0.7973 16 8 5.6243 -6.8447 -0.1955 17 6 4.8581 -8.2459 1.5075 18 6 4.0615 -8.3753 2.6483 19 6 3.9963 -9.5829 3.3080 20 6 4.7188 -10.6720 2.8434 21 9 4.6493 -11.8532 3.4956 22 6 5.5113 -10.5538 1.7117 23 9 6.2128 -11.6183 1.2647 24 6 5.5804 -9.3475 1.0371 25 9 6.3478 -9.2326 -0.0689 26 7 3.6647 -3.5705 0.9089 27 1 -0.4850 0.8400 0.0004 28 1 3.8711 -0.6780 -0.9023 29 1 3.8785 -0.6824 0.8776 30 1 5.2842 -2.6013 -1.7657 31 1 5.6843 -5.1081 -1.1011 32 1 3.6750 -5.9843 2.0410 33 1 3.4974 -7.5294 3.0125 34 1 3.3801 -9.6821 4.1893 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078745832.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:30 Heat of formation + Delta-G solvation = -64.802519 kcal Electronic energy + Delta-G solvation = -25755.423628 eV Core-core repulsion = 21240.860498 eV Total energy + Delta-G solvation = -4514.563130 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.95522 -50.36748 -49.63898 -42.34044 -41.09598 -39.31872 -36.39152 -35.25459 -33.35047 -32.00955 -31.83398 -30.97916 -29.00255 -26.00936 -24.60422 -24.28314 -23.11369 -21.96705 -21.18898 -19.77942 -19.21002 -19.02467 -19.00815 -18.24856 -18.01674 -17.60513 -17.21431 -16.80251 -16.79715 -16.49999 -16.19452 -16.05665 -15.86195 -15.60421 -15.50885 -15.26938 -14.82163 -14.46601 -14.32895 -13.89880 -13.82668 -13.39573 -13.12689 -13.04168 -12.95023 -12.65033 -12.20222 -11.82020 -11.71550 -11.49905 -11.14317 -10.85971 -10.25550 -10.18684 -9.79833 -9.14993 -8.35877 -6.46058 -0.94576 -0.48135 0.91083 1.15813 1.35103 1.39337 1.41397 1.50362 1.91475 2.02898 2.24450 2.30330 2.34013 2.87927 2.95960 2.97095 3.11945 3.27645 3.45376 3.89182 4.09874 4.20597 4.28973 4.56453 4.59645 4.63623 4.71203 4.71738 4.86819 4.88708 5.09638 5.25813 5.31561 5.81751 5.99859 6.11074 6.39725 6.59752 6.81120 6.99815 7.16971 8.80940 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.028691 B = 0.002394 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.676957 B =11691.409719 C =12432.659513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.230 1.230 6 H -0.280 1.280 7 C -0.546 4.546 8 H 0.029 0.971 9 C 0.238 3.762 10 N -0.342 5.342 11 C 0.062 3.938 12 C -0.295 4.295 13 C 0.265 3.735 14 N -0.611 5.611 15 C 0.568 3.432 16 O -0.531 6.531 17 C -0.157 4.157 18 C -0.015 4.015 19 C -0.113 4.113 20 C 0.133 3.867 21 F -0.114 7.114 22 C 0.010 3.990 23 F -0.125 7.125 24 C 0.142 3.858 25 F -0.115 7.115 26 N -0.337 5.337 27 H 0.272 0.728 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.210 0.790 31 H 0.166 0.834 32 H 0.428 0.572 33 H 0.191 0.809 34 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.994 -18.561 8.013 23.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.183 4.183 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.153 1.153 6 H -0.206 1.206 7 C -0.584 4.584 8 H 0.047 0.953 9 C 0.119 3.881 10 N -0.124 5.124 11 C -0.085 4.085 12 C -0.326 4.326 13 C 0.010 3.990 14 N -0.261 5.261 15 C 0.355 3.645 16 O -0.407 6.407 17 C -0.161 4.161 18 C -0.033 4.033 19 C -0.131 4.131 20 C 0.112 3.888 21 F -0.093 7.093 22 C -0.011 4.011 23 F -0.104 7.104 24 C 0.120 3.880 25 F -0.093 7.093 26 N -0.168 5.168 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.226 0.774 31 H 0.184 0.816 32 H 0.268 0.732 33 H 0.208 0.792 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 10.556 -17.814 8.095 22.233 hybrid contribution 0.392 -0.262 -0.675 0.823 sum 10.948 -18.077 7.420 22.398 Atomic orbital electron populations 1.70043 1.08549 1.28774 1.50706 1.25887 0.95730 1.03444 0.93285 0.85651 0.79901 0.77405 0.79636 1.18970 1.15274 1.20578 1.21231 0.90450 0.93781 1.52936 0.95261 1.19924 0.94196 0.74248 0.99773 1.48540 1.34206 1.10038 1.19619 1.23231 0.94311 0.94633 0.96375 1.21759 1.11838 0.97261 1.01716 1.19326 0.97889 0.87029 0.94743 1.42187 1.47505 1.05907 1.30485 1.18074 0.79197 0.83252 0.83931 1.90798 1.40072 1.83704 1.26121 1.19610 1.04437 0.91444 1.00658 1.21605 0.92759 0.99444 0.89492 1.21529 0.99618 0.89002 1.02966 1.17781 0.97236 0.83765 0.90037 1.91610 1.94478 1.44082 1.79095 1.17529 1.01229 0.84284 0.98043 1.91557 1.76811 1.53223 1.88789 1.17472 0.93030 0.92393 0.85069 1.91616 1.72153 1.96241 1.49281 1.77308 1.25393 0.96483 1.17604 0.91909 0.89992 0.93522 0.77366 0.81630 0.73220 0.79165 0.77660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.76 13.96 21.45 0.30 -56.46 16 2 C 0.02 0.85 5.47 84.65 0.46 1.31 16 3 Si 0.95 39.53 27.47 68.60 1.88 41.41 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.23 -8.21 6.54 99.48 0.65 -7.56 16 6 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.55 -30.46 9.79 25.60 0.25 -30.20 16 8 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 9 C 0.24 10.56 5.33 85.63 0.46 11.02 16 10 N -0.34 -14.59 3.67 -351.85 -1.29 -15.88 16 11 C 0.06 2.21 11.43 83.52 0.96 3.16 16 12 C -0.29 -10.73 9.61 22.11 0.21 -10.52 16 13 C 0.26 9.77 8.11 133.35 1.08 10.85 16 14 N -0.61 -16.26 5.40 -310.35 -1.67 -17.94 16 15 C 0.57 14.93 7.73 86.70 0.67 15.60 16 16 O -0.53 -18.07 12.46 -4.04 -0.05 -18.12 16 17 C -0.16 -2.84 5.88 -20.06 -0.12 -2.96 16 18 C -0.01 -0.12 9.53 22.52 0.21 0.09 16 19 C -0.11 -0.65 10.00 22.27 0.22 -0.43 16 20 C 0.13 1.62 7.31 22.48 0.16 1.79 16 21 F -0.11 -1.55 17.17 44.97 0.77 -0.77 16 22 C 0.01 0.19 7.30 22.41 0.16 0.35 16 23 F -0.13 -2.69 17.09 44.97 0.77 -1.93 16 24 C 0.14 3.01 7.29 22.70 0.17 3.17 16 25 F -0.11 -3.19 15.46 44.97 0.70 -2.49 16 26 N -0.34 -14.61 12.42 -54.48 -0.68 -15.29 16 27 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 28 H 0.08 3.17 7.12 -2.39 -0.02 3.15 16 29 H 0.05 1.99 7.57 -2.39 -0.02 1.97 16 30 H 0.21 5.41 8.06 -2.91 -0.02 5.39 16 31 H 0.17 5.93 5.91 -2.92 -0.02 5.91 16 32 H 0.43 7.98 6.85 -92.71 -0.63 7.34 16 33 H 0.19 0.40 6.40 -2.91 -0.02 0.38 16 34 H 0.21 -0.40 8.06 -2.91 -0.02 -0.42 16 Total: -1.00 -78.80 316.94 6.15 -72.65 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.52 Total: 11.59 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 4.90 Total: 3.23 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -3.34 Total: -105.57 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.05 Total: -18.12 kcal Atomic # 9 Polarization: -7.43 SS G_CDS: 2.24 Total: -5.19 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 1.88 Total: 41.41 kcal Total: -78.80 6.15 -72.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078745832.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.849 kcal (2) G-P(sol) polarization free energy of solvation -78.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds