Wall clock time and date at job start Tue Mar 31 2020 13:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86803 * 120.00349 * 2 1 4 4 H 1.48498 * 109.46969 * 274.66423 * 3 2 1 5 5 H 1.48500 * 109.47035 * 34.66035 * 3 2 1 6 6 H 1.48491 * 109.47349 * 154.66123 * 3 2 1 7 7 C 1.39947 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99819 * 162.23036 * 7 2 1 9 9 C 1.41395 * 120.00060 * 342.23678 * 7 2 1 10 10 C 1.40714 * 120.24314 * 155.28907 * 9 7 2 11 11 C 1.37624 * 119.74139 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24881 * 0.02562 * 11 10 9 13 13 S 1.76204 * 119.74828 * 179.97438 * 12 11 10 14 14 O 1.42096 * 106.40259 * 336.46293 * 13 12 11 15 15 O 1.42095 * 106.40014 * 203.53669 * 13 12 11 16 16 N 1.65606 * 107.21499 * 90.00059 * 13 12 11 17 17 C 1.46495 * 119.99786 * 64.99952 * 16 13 12 18 18 H 1.08996 * 109.47661 * 334.99915 * 17 16 13 19 19 C 1.50703 * 109.46903 * 95.00239 * 17 16 13 20 20 O 1.20821 * 119.99859 * 359.97438 * 19 17 16 21 21 O 1.34237 * 119.99744 * 179.97438 * 19 17 16 22 22 C 1.53001 * 109.47130 * 214.99657 * 17 16 13 23 23 C 1.52999 * 117.51868 * 111.28499 * 22 17 16 24 24 C 1.52992 * 117.50145 * 179.91509 * 22 17 16 25 25 C 1.38631 * 120.50149 * 0.25116 * 12 11 10 26 26 C 1.37619 * 120.24802 * 359.44739 * 25 12 11 27 27 H 0.97004 * 120.00065 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.12991 * 359.97438 * 10 9 7 29 29 H 1.08002 * 119.87041 * 179.97438 * 11 10 9 30 30 H 0.96996 * 119.99777 * 244.99865 * 16 13 12 31 31 H 0.96697 * 116.99489 * 179.97438 * 21 19 17 32 32 H 1.09009 * 115.54834 * 325.59211 * 22 17 16 33 33 H 1.09007 * 117.49944 * 214.97826 * 23 22 17 34 34 H 1.09000 * 117.49966 * 359.97438 * 23 22 17 35 35 H 1.08995 * 117.49902 * 359.97438 * 24 22 17 36 36 H 1.09001 * 117.49965 * 145.00064 * 24 22 17 37 37 H 1.08000 * 119.87778 * 179.70887 * 25 12 11 38 38 H 1.08006 * 120.12633 * 180.27298 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3912 2.1033 -1.3954 5 1 1.4925 2.6222 0.7962 6 1 3.5855 1.4137 0.5991 7 6 2.0079 -1.2120 0.0005 8 1 3.0492 -1.2344 -0.2849 9 6 1.3515 -2.4071 0.3747 10 6 1.8217 -3.6493 -0.0899 11 6 1.1746 -4.8062 0.2802 12 6 0.0632 -4.7507 1.1070 13 16 -0.7557 -6.2400 1.5722 14 8 -0.4428 -7.1993 0.5717 15 8 -2.0868 -5.8767 1.9116 16 7 -0.0458 -6.7736 2.9700 17 6 -0.1560 -5.9804 4.1966 18 1 -0.3204 -4.9341 3.9392 19 6 -1.3151 -6.4837 5.0178 20 8 -1.9810 -7.4097 4.6190 21 8 -1.6077 -5.9032 6.1922 22 6 1.1362 -6.1097 5.0055 23 6 2.0257 -4.8701 5.1199 24 6 1.2200 -5.3479 6.3296 25 6 -0.4122 -3.5320 1.5660 26 6 0.2228 -2.3630 1.2138 27 1 -0.4850 0.8401 -0.0004 28 1 2.6866 -3.6947 -0.7352 29 1 1.5335 -5.7607 -0.0755 30 1 0.4430 -7.6114 2.9764 31 1 -2.3604 -6.2605 6.6830 32 1 1.6299 -7.0801 4.9510 33 1 3.1045 -5.0249 5.1406 34 1 1.6905 -3.9622 4.6184 35 1 0.3548 -4.7541 6.6243 36 1 1.7688 -5.8169 7.1463 37 1 -1.2817 -3.5002 2.2059 38 1 -0.1467 -1.4150 1.5761 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092130823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:01 Heat of formation + Delta-G solvation = -126.985136 kcal Electronic energy + Delta-G solvation = -25753.923244 eV Core-core repulsion = 21881.671614 eV Total energy + Delta-G solvation = -3872.251630 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.37723 -37.70227 -37.55393 -36.52866 -36.13768 -35.14836 -34.11412 -33.98823 -30.32226 -29.52612 -27.69619 -25.87477 -22.82355 -22.21779 -21.59970 -21.22421 -20.70132 -19.02642 -18.11221 -17.66885 -17.23124 -17.04531 -16.39790 -16.07421 -15.54601 -15.52852 -14.80435 -14.27446 -14.16818 -13.92673 -13.46952 -13.27048 -13.01099 -12.47788 -12.25484 -12.03891 -11.80735 -11.56743 -11.55385 -11.48536 -11.40524 -11.33897 -11.27873 -11.25025 -11.02190 -10.91336 -10.56821 -10.44929 -10.19461 -9.80954 -9.74348 -9.54331 -9.27126 -8.01901 -7.76488 -7.19079 -4.85260 1.11777 2.19673 2.25747 2.83559 2.85764 2.87377 2.92172 2.94661 3.45597 3.62620 3.93395 4.18649 4.37697 4.55173 4.81044 4.85731 4.89666 5.12826 5.21037 5.33053 5.34769 5.68385 5.82839 5.89892 6.02447 6.06226 6.09041 6.15726 6.51951 6.62785 6.65873 6.84106 6.99201 7.10965 7.28593 7.37180 7.57040 7.71547 7.91601 7.94725 8.26160 8.45971 8.59319 9.72334 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014876 B = 0.004212 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.715236 B = 6645.547931 C = 7460.413967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.433 4.433 8 H 0.088 0.912 9 C 0.140 3.860 10 C -0.237 4.237 11 C 0.006 3.994 12 C -0.789 4.789 13 S 2.688 3.312 14 O -0.978 6.978 15 O -0.975 6.975 16 N -1.101 6.101 17 C 0.205 3.795 18 H 0.126 0.874 19 C 0.467 3.533 20 O -0.499 6.499 21 O -0.513 6.513 22 C -0.166 4.166 23 C -0.163 4.163 24 C -0.166 4.166 25 C -0.021 4.021 26 C -0.180 4.180 27 H 0.290 0.710 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.416 0.584 31 H 0.406 0.594 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.260 -4.353 11.630 12.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.150 4.150 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.460 4.460 8 H 0.106 0.894 9 C 0.136 3.864 10 C -0.258 4.258 11 C -0.015 4.015 12 C -0.885 4.885 13 S 2.788 3.212 14 O -0.969 6.969 15 O -0.965 6.965 16 N -0.854 5.854 17 C 0.095 3.905 18 H 0.144 0.856 19 C 0.305 3.695 20 O -0.385 6.385 21 O -0.324 6.324 22 C -0.186 4.186 23 C -0.200 4.200 24 C -0.204 4.204 25 C -0.041 4.041 26 C -0.200 4.200 27 H 0.101 0.899 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.250 0.750 31 H 0.264 0.736 32 H 0.134 0.866 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.120 0.880 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.345 -4.612 10.853 12.023 hybrid contribution 0.411 0.644 0.208 0.792 sum 2.757 -3.968 11.061 12.070 Atomic orbital electron populations 1.69819 1.07955 1.30505 1.30238 1.26152 0.94879 1.02185 0.91833 0.86147 0.80768 0.79593 0.79568 1.19080 1.19552 1.17951 1.19957 0.98516 0.91192 1.36343 0.89378 1.17849 0.90029 0.92139 0.86351 1.21020 1.04318 0.92748 1.07701 1.20151 0.91632 0.97491 0.92176 1.29085 1.18719 1.15052 1.25674 1.01500 0.73676 0.74361 0.71713 1.93499 1.85399 1.61835 1.56155 1.93512 1.34870 1.84677 1.83458 1.55765 1.72800 1.34006 1.22857 1.19594 0.90008 0.96671 0.84275 0.85623 1.24129 0.85216 0.80579 0.79539 1.90707 1.49964 1.27989 1.69812 1.84552 1.52611 1.61720 1.33540 1.22295 0.96826 0.98753 1.00711 1.23146 0.98175 0.97379 1.01264 1.23095 1.03283 1.03146 0.90883 1.20250 0.95874 0.91863 0.96151 1.21331 0.99674 0.96821 1.02215 0.89860 0.88129 0.87741 0.75031 0.73590 0.86586 0.88241 0.87564 0.87198 0.88571 0.88027 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.80 10.97 55.55 0.61 -17.19 16 2 C 0.07 1.61 5.14 -17.34 -0.09 1.52 16 3 Si 0.92 16.41 29.60 -169.99 -5.03 11.38 16 4 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 5 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 6 H -0.26 -4.53 7.11 56.52 0.40 -4.12 16 7 C -0.43 -10.21 9.05 -37.74 -0.34 -10.56 16 8 H 0.09 1.96 7.91 -52.49 -0.41 1.54 16 9 C 0.14 3.40 5.57 -106.83 -0.60 2.81 16 10 C -0.24 -5.40 9.80 -38.87 -0.38 -5.78 16 11 C 0.01 0.12 9.49 -39.66 -0.38 -0.25 16 12 C -0.79 -16.85 5.84 -39.29 -0.23 -17.07 16 13 S 2.69 53.03 5.65 -107.50 -0.61 52.43 16 14 O -0.98 -21.23 17.26 -57.17 -0.99 -22.21 16 15 O -0.98 -21.82 17.01 -57.17 -0.97 -22.79 16 16 N -1.10 -16.83 4.96 -5.88 -0.03 -16.85 16 17 C 0.21 2.84 2.92 -69.08 -0.20 2.64 16 18 H 0.13 1.79 6.99 -51.93 -0.36 1.43 16 19 C 0.47 6.67 7.68 36.01 0.28 6.95 16 20 O -0.50 -8.79 17.19 -18.75 -0.32 -9.11 16 21 O -0.51 -5.36 11.36 -39.28 -0.45 -5.80 16 22 C -0.17 -1.81 5.37 -90.62 -0.49 -2.29 16 23 C -0.16 -1.72 10.18 -26.73 -0.27 -1.99 16 24 C -0.17 -1.55 9.45 -26.74 -0.25 -1.81 16 25 C -0.02 -0.47 8.88 -39.66 -0.35 -0.82 16 26 C -0.18 -4.29 8.70 -38.87 -0.34 -4.63 16 27 H 0.29 6.06 8.30 -40.82 -0.34 5.72 16 28 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 29 H 0.10 2.05 7.60 -52.49 -0.40 1.65 16 30 H 0.42 5.30 8.82 -34.47 -0.30 5.00 16 31 H 0.41 2.57 9.10 45.56 0.41 2.98 16 32 H 0.12 1.10 8.12 -51.92 -0.42 0.68 16 33 H 0.10 0.94 8.14 -51.92 -0.42 0.51 16 34 H 0.11 1.26 8.05 -51.93 -0.42 0.84 16 35 H 0.11 1.04 6.85 -51.93 -0.36 0.69 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.10 2.09 7.59 -52.49 -0.40 1.69 16 38 H 0.12 2.95 6.18 -52.48 -0.32 2.62 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -32.08 343.20 -9.64 -41.72 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -3.39 Total: 14.54 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: -3.64 Total: -31.28 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.58 Total: -34.04 kcal Atomic # 8 Polarization: -57.18 SS G_CDS: -2.73 Total: -59.91 kcal Atomic # 14 Polarization: 16.41 SS G_CDS: -5.03 Total: 11.38 kcal Atomic # 16 Polarization: 53.03 SS G_CDS: -0.61 Total: 52.43 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.08 -9.64 -41.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.265 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds