Wall clock time and date at job start Tue Mar 31 2020 13:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86803 * 120.00349 * 2 1 4 4 H 1.48498 * 109.46969 * 274.66423 * 3 2 1 5 5 H 1.48500 * 109.47035 * 34.66035 * 3 2 1 6 6 H 1.48491 * 109.47349 * 154.66123 * 3 2 1 7 7 C 1.39947 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99819 * 162.23036 * 7 2 1 9 9 C 1.41395 * 120.00060 * 342.23678 * 7 2 1 10 10 C 1.40714 * 120.24314 * 155.28907 * 9 7 2 11 11 C 1.37624 * 119.74139 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24881 * 0.02562 * 11 10 9 13 13 S 1.76204 * 119.74828 * 179.97438 * 12 11 10 14 14 O 1.42096 * 106.40259 * 336.46293 * 13 12 11 15 15 O 1.42095 * 106.40014 * 203.53669 * 13 12 11 16 16 N 1.65606 * 107.21499 * 90.00059 * 13 12 11 17 17 C 1.46495 * 119.99786 * 64.99952 * 16 13 12 18 18 H 1.08996 * 109.47661 * 334.99915 * 17 16 13 19 19 C 1.50703 * 109.46903 * 95.00239 * 17 16 13 20 20 O 1.20821 * 119.99859 * 359.97438 * 19 17 16 21 21 O 1.34237 * 119.99744 * 179.97438 * 19 17 16 22 22 C 1.53001 * 109.47130 * 214.99657 * 17 16 13 23 23 C 1.52999 * 117.51868 * 111.28499 * 22 17 16 24 24 C 1.52992 * 117.50145 * 179.91509 * 22 17 16 25 25 C 1.38631 * 120.50149 * 0.25116 * 12 11 10 26 26 C 1.37619 * 120.24802 * 359.44739 * 25 12 11 27 27 H 0.97004 * 120.00065 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.12991 * 359.97438 * 10 9 7 29 29 H 1.08002 * 119.87041 * 179.97438 * 11 10 9 30 30 H 0.96996 * 119.99777 * 244.99865 * 16 13 12 31 31 H 0.96697 * 116.99489 * 179.97438 * 21 19 17 32 32 H 1.09009 * 115.54834 * 325.59211 * 22 17 16 33 33 H 1.09007 * 117.49944 * 214.97826 * 23 22 17 34 34 H 1.09000 * 117.49966 * 359.97438 * 23 22 17 35 35 H 1.08995 * 117.49902 * 359.97438 * 24 22 17 36 36 H 1.09001 * 117.49965 * 145.00064 * 24 22 17 37 37 H 1.08000 * 119.87778 * 179.70887 * 25 12 11 38 38 H 1.08006 * 120.12633 * 180.27298 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3912 2.1033 -1.3954 5 1 1.4925 2.6222 0.7962 6 1 3.5855 1.4137 0.5991 7 6 2.0079 -1.2120 0.0005 8 1 3.0492 -1.2344 -0.2849 9 6 1.3515 -2.4071 0.3747 10 6 1.8217 -3.6493 -0.0899 11 6 1.1746 -4.8062 0.2802 12 6 0.0632 -4.7507 1.1070 13 16 -0.7557 -6.2400 1.5722 14 8 -0.4428 -7.1993 0.5717 15 8 -2.0868 -5.8767 1.9116 16 7 -0.0458 -6.7736 2.9700 17 6 -0.1560 -5.9804 4.1966 18 1 -0.3204 -4.9341 3.9392 19 6 -1.3151 -6.4837 5.0178 20 8 -1.9810 -7.4097 4.6190 21 8 -1.6077 -5.9032 6.1922 22 6 1.1362 -6.1097 5.0055 23 6 2.0257 -4.8701 5.1199 24 6 1.2200 -5.3479 6.3296 25 6 -0.4122 -3.5320 1.5660 26 6 0.2228 -2.3630 1.2138 27 1 -0.4850 0.8401 -0.0004 28 1 2.6866 -3.6947 -0.7352 29 1 1.5335 -5.7607 -0.0755 30 1 0.4430 -7.6114 2.9764 31 1 -2.3604 -6.2605 6.6830 32 1 1.6299 -7.0801 4.9510 33 1 3.1045 -5.0249 5.1406 34 1 1.6905 -3.9622 4.6184 35 1 0.3548 -4.7541 6.6243 36 1 1.7688 -5.8169 7.1463 37 1 -1.2817 -3.5002 2.2059 38 1 -0.1467 -1.4150 1.5761 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092130823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:01 Heat of formation + Delta-G solvation = -149.638387 kcal Electronic energy + Delta-G solvation = -25754.905563 eV Core-core repulsion = 21881.671614 eV Total energy + Delta-G solvation = -3873.233949 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.46327 -39.39453 -38.56812 -38.18878 -37.19664 -36.85405 -35.81179 -35.17235 -32.08129 -31.29404 -28.84717 -27.62763 -23.76626 -23.34600 -23.04088 -22.96166 -21.73706 -20.50461 -19.42732 -19.21571 -18.68110 -18.50301 -17.53410 -17.44293 -17.16923 -16.66187 -16.21678 -15.82832 -15.38267 -15.14062 -14.94644 -14.89555 -14.14920 -14.09759 -13.95772 -13.54894 -13.36611 -13.17343 -13.08501 -12.97706 -12.86767 -12.66354 -12.55261 -12.45918 -12.30289 -12.12256 -12.00113 -11.56482 -11.50056 -11.23836 -11.19544 -11.08470 -10.60329 -9.79578 -9.54777 -8.87037 -6.64329 -0.46069 0.46932 1.06435 1.15123 1.37961 1.43344 1.55042 1.88404 2.12212 2.16279 2.50309 2.88117 3.02479 3.46468 3.51071 3.56092 3.82775 3.98148 4.01032 4.23527 4.29186 4.34970 4.41805 4.74866 4.88383 4.95032 4.95680 5.07994 5.10365 5.23930 5.26750 5.38953 5.52774 5.59538 5.59961 5.75730 5.93183 5.98266 6.16006 6.49328 6.69004 6.81327 6.98766 8.08022 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014876 B = 0.004212 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.715236 B = 6645.547931 C = 7460.413967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.035 3.965 3 Si 0.990 3.010 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.251 1.251 7 C -0.461 4.461 8 H 0.094 0.906 9 C 0.114 3.886 10 C -0.252 4.252 11 C 0.002 3.998 12 C -0.793 4.793 13 S 2.716 3.284 14 O -0.997 6.997 15 O -1.002 7.002 16 N -1.088 6.088 17 C 0.195 3.805 18 H 0.119 0.881 19 C 0.472 3.528 20 O -0.537 6.537 21 O -0.498 6.498 22 C -0.171 4.171 23 C -0.172 4.172 24 C -0.148 4.148 25 C -0.022 4.022 26 C -0.200 4.200 27 H 0.299 0.701 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.430 0.570 31 H 0.426 0.574 32 H 0.135 0.865 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.330 -4.361 13.054 14.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.184 4.184 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.174 1.174 7 C -0.487 4.487 8 H 0.112 0.888 9 C 0.110 3.890 10 C -0.273 4.273 11 C -0.018 4.018 12 C -0.888 4.888 13 S 2.813 3.187 14 O -0.988 6.988 15 O -0.992 6.992 16 N -0.846 5.846 17 C 0.085 3.915 18 H 0.136 0.864 19 C 0.312 3.688 20 O -0.426 6.426 21 O -0.311 6.311 22 C -0.190 4.190 23 C -0.209 4.209 24 C -0.186 4.186 25 C -0.042 4.042 26 C -0.220 4.220 27 H 0.110 0.890 28 H 0.131 0.869 29 H 0.143 0.857 30 H 0.267 0.733 31 H 0.288 0.712 32 H 0.152 0.848 33 H 0.131 0.869 34 H 0.105 0.895 35 H 0.126 0.874 36 H 0.138 0.862 37 H 0.130 0.870 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.418 -4.612 12.292 13.567 hybrid contribution 0.017 0.573 -0.138 0.590 sum 3.435 -4.039 12.154 13.261 Atomic orbital electron populations 1.69857 1.09497 1.31947 1.30742 1.27022 0.95485 1.05268 0.90647 0.85051 0.79379 0.74940 0.79670 1.18614 1.18793 1.17438 1.20259 0.99024 0.91998 1.37454 0.88769 1.18189 0.90593 0.93229 0.86961 1.21240 1.05093 0.92735 1.08198 1.20423 0.91491 0.98081 0.91806 1.29379 1.18345 1.15698 1.25346 1.00560 0.72894 0.73292 0.71918 1.93465 1.85557 1.61960 1.57809 1.93478 1.36655 1.84995 1.84043 1.55240 1.72592 1.34619 1.22192 1.19827 0.91842 0.95886 0.83975 0.86370 1.24092 0.84653 0.79882 0.80149 1.90701 1.51204 1.29781 1.70943 1.84495 1.53513 1.60933 1.32165 1.22316 0.95449 0.99766 1.01506 1.23163 0.99006 0.96458 1.02251 1.23192 1.02825 1.01883 0.90666 1.20399 0.95963 0.91844 0.96004 1.21331 1.00526 0.96961 1.03226 0.89006 0.86923 0.85717 0.73311 0.71171 0.84765 0.86921 0.89524 0.87381 0.86202 0.86992 0.87011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.83 10.97 21.83 0.24 -37.59 16 2 C 0.04 1.58 5.14 85.26 0.44 2.02 16 3 Si 0.99 33.20 29.60 68.60 2.03 35.23 16 4 H -0.26 -8.54 7.11 99.48 0.71 -7.83 16 5 H -0.26 -8.45 7.11 99.48 0.71 -7.75 16 6 H -0.25 -8.14 7.11 99.48 0.71 -7.43 16 7 C -0.46 -22.07 9.05 23.46 0.21 -21.86 16 8 H 0.09 4.23 7.91 -2.91 -0.02 4.20 16 9 C 0.11 5.66 5.57 -21.29 -0.12 5.54 16 10 C -0.25 -11.59 9.80 22.73 0.22 -11.37 16 11 C 0.00 0.08 9.49 22.22 0.21 0.29 16 12 C -0.79 -33.92 5.84 22.46 0.13 -33.78 16 13 S 2.72 105.93 5.65 -56.49 -0.32 105.61 16 14 O -1.00 -42.52 17.26 -128.00 -2.21 -44.73 16 15 O -1.00 -44.73 17.01 -128.00 -2.18 -46.90 16 16 N -1.09 -32.09 4.96 -172.53 -0.86 -32.94 16 17 C 0.19 5.16 2.92 44.25 0.13 5.29 16 18 H 0.12 3.33 6.99 -2.39 -0.02 3.31 16 19 C 0.47 12.80 7.68 71.24 0.55 13.35 16 20 O -0.54 -18.38 17.19 21.98 0.38 -18.00 16 21 O -0.50 -9.30 11.36 -51.48 -0.59 -9.88 16 22 C -0.17 -3.34 5.37 -10.80 -0.06 -3.40 16 23 C -0.17 -3.36 10.18 30.59 0.31 -3.05 16 24 C -0.15 -2.36 9.45 30.59 0.29 -2.07 16 25 C -0.02 -0.99 8.88 22.22 0.20 -0.79 16 26 C -0.20 -9.83 8.70 22.73 0.20 -9.63 16 27 H 0.30 12.61 8.30 -92.71 -0.77 11.84 16 28 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 29 H 0.13 4.77 7.60 -2.91 -0.02 4.75 16 30 H 0.43 10.28 8.82 -96.75 -0.85 9.42 16 31 H 0.43 4.33 9.10 -74.06 -0.67 3.66 16 32 H 0.13 2.15 8.12 -2.38 -0.02 2.13 16 33 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.09 2.05 8.05 -2.39 -0.02 2.03 16 35 H 0.11 1.78 6.85 -2.39 -0.02 1.77 16 36 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.11 4.69 7.59 -2.91 -0.02 4.67 16 38 H 0.11 5.62 6.18 -2.91 -0.02 5.60 16 Total: -1.00 -69.16 343.20 -1.18 -70.34 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: -0.39 Total: 38.32 kcal Atomic # 6 Polarization: -62.17 SS G_CDS: 2.71 Total: -59.46 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -0.62 Total: -70.53 kcal Atomic # 8 Polarization: -114.92 SS G_CDS: -4.59 Total: -119.52 kcal Atomic # 14 Polarization: 33.20 SS G_CDS: 2.03 Total: 35.23 kcal Atomic # 16 Polarization: 105.93 SS G_CDS: -0.32 Total: 105.61 kcal Total: -69.16 -1.18 -70.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.296 kcal (2) G-P(sol) polarization free energy of solvation -69.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds