Wall clock time and date at job start Tue Mar 31 2020 14:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 120.00096 * 2 1 4 4 N 1.46496 * 109.47315 * 124.99789 * 3 2 1 5 5 C 1.46502 * 119.99953 * 84.99714 * 4 3 2 6 6 C 1.50706 * 109.46937 * 85.00185 * 5 4 3 7 7 O 1.20821 * 119.99770 * 0.02562 * 6 5 4 8 8 O 1.34226 * 119.99859 * 179.97438 * 6 5 4 9 9 S 1.65596 * 119.99948 * 264.72618 * 4 3 2 10 10 O 1.42108 * 106.40007 * 203.53761 * 9 4 3 11 11 O 1.42092 * 106.40600 * 336.45952 * 9 4 3 12 12 C 1.76207 * 107.21875 * 90.00015 * 9 4 3 13 13 C 1.38630 * 119.74617 * 269.72703 * 12 9 4 14 14 C 1.37618 * 120.24734 * 179.72099 * 13 12 9 15 15 C 1.40722 * 119.74341 * 0.56736 * 14 13 12 16 16 C 1.41393 * 120.24665 * 179.67963 * 15 14 13 17 17 H 1.07995 * 120.00077 * 204.41074 * 16 15 14 18 18 C 1.39950 * 119.99716 * 24.41058 * 16 15 14 19 19 N 1.30822 * 119.99781 * 17.84678 * 18 16 15 20 20 Si 1.86800 * 119.99792 * 197.84387 * 18 16 15 21 21 H 1.48492 * 109.47037 * 60.00353 * 20 18 16 22 22 H 1.48503 * 109.47006 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46972 * 300.00211 * 20 18 16 24 24 C 1.40718 * 119.51054 * 359.70535 * 15 14 13 25 25 C 1.37616 * 119.74431 * 0.02562 * 24 15 14 26 26 H 1.07999 * 119.99732 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99929 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.00147 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.46999 * 4.99590 * 3 2 1 30 30 H 1.08999 * 109.46891 * 244.99925 * 3 2 1 31 31 H 1.08996 * 109.47643 * 205.00029 * 5 4 3 32 32 H 1.09001 * 109.47473 * 325.00816 * 5 4 3 33 33 H 0.96700 * 116.99862 * 179.97438 * 8 6 5 34 34 H 1.07996 * 119.87960 * 359.97438 * 13 12 9 35 35 H 1.07995 * 120.13359 * 180.27479 * 14 13 12 36 36 H 0.96998 * 119.99619 * 179.97438 * 19 18 16 37 37 H 1.08002 * 120.12891 * 179.97438 * 24 15 14 38 38 H 1.08003 * 119.87669 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 4.3217 0.7268 1.0024 6 6 5.2698 1.7227 0.3856 7 8 4.8767 2.8249 0.0852 8 8 6.5512 1.3855 0.1711 9 16 2.5467 2.0523 2.5539 10 8 3.7509 2.4133 3.2166 11 8 1.5287 2.9882 2.2273 12 6 1.7836 0.8139 3.5484 13 6 0.4148 0.6112 3.4643 14 6 -0.1910 -0.3570 4.2320 15 6 0.5827 -1.1345 5.1136 16 6 -0.0298 -2.1275 5.9123 17 1 0.4363 -2.4423 6.8342 18 6 -1.2400 -2.7025 5.5080 19 7 -1.6302 -2.5984 4.2637 20 14 -2.2981 -3.6186 6.7453 21 1 -2.6877 -2.6965 7.8421 22 1 -3.5183 -4.1297 6.0706 23 1 -1.5290 -4.7583 7.3063 24 6 1.9704 -0.9160 5.1947 25 6 2.5557 0.0539 4.4134 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9352 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6213 1.4026 -0.9314 31 1 4.6874 0.4394 1.9882 32 1 4.2584 -0.1564 0.3666 33 1 7.1212 2.0575 -0.2271 34 1 -0.1778 1.2125 2.7908 35 1 -1.2568 -0.5164 4.1618 36 1 -2.4688 -2.9973 3.9835 37 1 2.5738 -1.5067 5.8682 38 1 3.6206 0.2237 4.4743 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092464079.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:50 Heat of formation + Delta-G solvation = -146.019151 kcal Electronic energy + Delta-G solvation = -25827.508781 eV Core-core repulsion = 21954.431774 eV Total energy + Delta-G solvation = -3873.077007 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.23131 -39.35105 -38.33501 -37.96383 -36.89251 -36.84460 -35.77600 -34.10271 -32.03180 -31.25500 -29.55592 -27.59861 -26.28795 -23.28043 -22.94820 -22.83238 -20.82814 -19.92268 -19.39999 -19.16663 -18.88922 -18.27379 -17.62568 -17.11133 -17.10501 -16.63718 -15.95651 -15.80541 -15.64740 -15.13494 -14.93931 -14.68979 -14.08233 -14.07095 -13.94292 -13.79997 -13.54714 -13.28249 -13.13264 -12.90116 -12.88386 -12.76030 -12.64807 -12.56755 -12.46768 -12.35462 -11.99774 -11.79823 -11.52728 -11.30655 -11.19762 -10.31671 -10.20990 -9.73945 -9.50260 -8.84487 -6.61537 -0.48554 0.50983 1.11004 1.20628 1.34289 1.38158 1.46848 1.51142 1.99215 2.13098 2.27244 2.54626 2.94503 3.39586 3.54493 3.74680 4.03500 4.14980 4.29386 4.33665 4.35161 4.41431 4.45568 4.76656 4.83327 4.91003 4.95930 5.11673 5.13444 5.26817 5.42802 5.56364 5.62910 5.63845 5.77276 5.81585 5.90825 5.97115 6.18415 6.52502 6.71556 6.84524 7.00813 8.09690 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.020258 B = 0.003846 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.838989 B = 7278.085056 C = 7660.611794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.179 4.179 3 C 0.146 3.854 4 N -0.979 5.979 5 C 0.124 3.876 6 C 0.466 3.534 7 O -0.548 6.548 8 O -0.506 6.506 9 S 2.710 3.290 10 O -0.997 6.997 11 O -1.000 7.000 12 C -0.790 4.790 13 C -0.008 4.008 14 C -0.204 4.204 15 C 0.114 3.886 16 C -0.465 4.465 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.790 5.790 20 Si 0.986 3.014 21 H -0.261 1.261 22 H -0.264 1.264 23 H -0.255 1.255 24 C -0.254 4.254 25 C -0.001 4.001 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.126 0.874 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.134 0.866 32 H 0.165 0.835 33 H 0.427 0.573 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.298 0.702 37 H 0.113 0.887 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.988 -1.265 -8.556 11.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.199 4.199 3 C 0.022 3.978 4 N -0.814 5.814 5 C -0.003 4.003 6 C 0.308 3.692 7 O -0.439 6.439 8 O -0.319 6.319 9 S 2.808 3.192 10 O -0.987 6.987 11 O -0.991 6.991 12 C -0.884 4.884 13 C -0.029 4.029 14 C -0.224 4.224 15 C 0.110 3.890 16 C -0.492 4.492 17 H 0.109 0.891 18 C -0.182 4.182 19 N -0.412 5.412 20 Si 0.806 3.194 21 H -0.185 1.185 22 H -0.188 1.188 23 H -0.179 1.179 24 C -0.274 4.274 25 C -0.021 4.021 26 H 0.115 0.885 27 H 0.121 0.879 28 H 0.144 0.856 29 H 0.102 0.898 30 H 0.128 0.872 31 H 0.152 0.848 32 H 0.183 0.817 33 H 0.289 0.711 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.641 -0.409 -8.500 10.794 hybrid contribution -0.525 -0.433 0.360 0.770 sum 6.115 -0.842 -8.140 10.216 Atomic orbital electron populations 1.24021 0.96365 1.02373 0.98639 1.23325 0.96207 0.98971 1.01395 1.20593 0.91671 0.96125 0.89426 1.57317 1.20587 1.75031 1.28512 1.21002 0.78964 0.94511 1.05818 1.24417 0.82390 0.87912 0.74506 1.90709 1.78374 1.24820 1.49956 1.84474 1.21279 1.50178 1.75935 1.00809 0.72228 0.73764 0.72356 1.93449 1.47578 1.82892 1.74820 1.93428 1.60342 1.61011 1.84278 1.29435 1.04430 1.29448 1.25106 1.20292 0.92457 0.94421 0.95689 1.21290 0.99507 0.98527 1.03076 1.18176 0.91812 0.89731 0.89263 1.20213 1.05068 1.17124 1.06808 0.89101 1.26917 0.98055 0.95989 0.97262 1.69832 1.21050 1.32760 1.17570 0.85163 0.77317 0.78663 0.78242 1.18542 1.18835 1.17871 1.21263 0.94522 1.04505 1.07099 1.20438 0.98174 0.91439 0.92002 0.88468 0.87938 0.85607 0.89805 0.87221 0.84828 0.81735 0.71070 0.87466 0.87243 0.89070 0.86921 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.80 14.32 67.78 0.97 -3.83 16 2 C -0.18 -4.59 9.84 25.65 0.25 -4.33 16 3 C 0.15 3.85 6.11 85.64 0.52 4.37 16 4 N -0.98 -29.06 2.26 -523.90 -1.18 -30.24 16 5 C 0.12 2.78 5.93 85.63 0.51 3.29 16 6 C 0.47 11.28 8.39 71.24 0.60 11.88 16 7 O -0.55 -17.57 17.18 21.98 0.38 -17.19 16 8 O -0.51 -8.47 13.42 -51.38 -0.69 -9.16 16 9 S 2.71 105.89 5.65 -56.49 -0.32 105.57 16 10 O -1.00 -41.71 16.23 -128.00 -2.08 -43.79 16 11 O -1.00 -44.12 15.80 -128.00 -2.02 -46.15 16 12 C -0.79 -33.75 6.00 22.46 0.13 -33.61 16 13 C -0.01 -0.39 9.49 22.22 0.21 -0.18 16 14 C -0.20 -10.13 8.70 22.73 0.20 -9.93 16 15 C 0.11 5.69 5.57 -21.29 -0.12 5.57 16 16 C -0.47 -22.52 9.05 23.46 0.21 -22.31 16 17 H 0.09 4.15 7.91 -2.91 -0.02 4.13 16 18 C 0.04 1.69 5.14 85.26 0.44 2.13 16 19 N -0.79 -36.47 10.95 21.83 0.24 -36.23 16 20 Si 0.99 33.59 29.60 68.60 2.03 35.62 16 21 H -0.26 -8.90 7.11 99.48 0.71 -8.20 16 22 H -0.26 -8.48 7.11 99.48 0.71 -7.78 16 23 H -0.25 -8.35 7.11 99.48 0.71 -7.64 16 24 C -0.25 -11.57 9.80 22.73 0.22 -11.35 16 25 C 0.00 -0.03 9.49 22.22 0.21 0.18 16 26 H 0.10 2.62 7.84 -2.91 -0.02 2.59 16 27 H 0.10 2.75 8.06 -2.91 -0.02 2.73 16 28 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 29 H 0.08 2.48 6.56 -2.39 -0.02 2.46 16 30 H 0.11 2.32 8.11 -2.39 -0.02 2.30 16 31 H 0.13 2.83 7.61 -2.39 -0.02 2.82 16 32 H 0.17 2.28 8.11 -2.39 -0.02 2.26 16 33 H 0.43 3.67 9.10 -74.06 -0.67 3.00 16 34 H 0.11 4.66 7.59 -2.91 -0.02 4.63 16 35 H 0.11 5.60 6.15 -2.91 -0.02 5.58 16 36 H 0.30 12.28 8.30 -92.71 -0.77 11.51 16 37 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 38 H 0.13 4.65 7.60 -2.91 -0.02 4.63 16 Total: -1.00 -68.31 349.29 1.14 -67.16 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: 0.43 Total: 32.52 kcal Atomic # 6 Polarization: -62.47 SS G_CDS: 4.36 Total: -58.11 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: -0.94 Total: -66.48 kcal Atomic # 8 Polarization: -111.87 SS G_CDS: -4.41 Total: -116.28 kcal Atomic # 14 Polarization: 33.59 SS G_CDS: 2.03 Total: 35.62 kcal Atomic # 16 Polarization: 105.89 SS G_CDS: -0.32 Total: 105.57 kcal Total: -68.31 1.14 -67.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092464079.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.855 kcal (2) G-P(sol) polarization free energy of solvation -68.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds