Wall clock time and date at job start Tue Mar 31 2020 14:12:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52997 * 109.47164 * 2 1
4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3
5 5 C 1.50699 * 109.47078 * 60.00337 * 4 2 1
6 6 C 1.38242 * 119.99115 * 269.72231 * 5 4 2
7 7 C 1.38215 * 120.01191 * 179.76471 * 6 5 4
8 8 C 1.38325 * 119.99080 * 0.51088 * 7 6 5
9 9 Br 1.89101 * 120.01427 * 179.72086 * 8 7 6
10 10 C 1.38327 * 119.97809 * 359.74593 * 8 7 6
11 11 C 1.38224 * 119.98877 * 359.97438 * 10 8 7
12 12 N 1.46902 * 109.46626 * 120.00172 * 2 1 3
13 13 C 1.46898 * 110.99897 * 299.99595 * 12 2 1
14 14 C 1.53007 * 109.47117 * 180.02562 * 13 12 2
15 15 C 1.50698 * 109.47373 * 180.02562 * 14 13 12
16 16 H 1.08005 * 119.99642 * 359.97438 * 15 14 13
17 17 C 1.37876 * 120.00263 * 180.02562 * 15 14 13
18 18 N 1.31511 * 119.99529 * 359.97438 * 17 15 14
19 19 Si 1.86801 * 120.00138 * 180.02562 * 17 15 14
20 20 H 1.48496 * 109.47289 * 89.99489 * 19 17 15
21 21 H 1.48497 * 109.46594 * 209.99962 * 19 17 15
22 22 H 1.48498 * 109.46725 * 329.99717 * 19 17 15
23 23 H 1.09001 * 109.47002 * 59.99738 * 1 2 3
24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3
25 25 H 1.09000 * 109.47050 * 300.00004 * 1 2 3
26 26 H 1.09000 * 109.47140 * 60.00051 * 3 2 1
27 27 H 1.09001 * 109.47230 * 179.97438 * 3 2 1
28 28 H 1.09001 * 109.47375 * 300.00034 * 3 2 1
29 29 H 1.09002 * 109.47153 * 180.02562 * 4 2 1
30 30 H 1.08996 * 109.46952 * 300.00302 * 4 2 1
31 31 H 1.08003 * 119.99399 * 0.02562 * 6 5 4
32 32 H 1.08006 * 120.00729 * 180.23393 * 7 6 5
33 33 H 1.07997 * 120.00834 * 179.97438 * 10 8 7
34 34 H 1.07998 * 119.99504 * 179.97438 * 11 10 8
35 35 H 1.00893 * 111.00154 * 63.95510 * 12 2 1
36 36 H 1.09005 * 109.47558 * 300.00065 * 13 12 2
37 37 H 1.08999 * 109.47385 * 60.00731 * 13 12 2
38 38 H 1.09005 * 109.46499 * 300.00150 * 14 13 12
39 39 H 1.08999 * 109.47382 * 59.99850 * 14 13 12
40 40 H 0.97009 * 120.00060 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0401 -0.7213 -1.2492
5 6 1.5378 -0.0109 -2.4797
6 6 0.3326 -0.3802 -3.0473
7 6 -0.1308 0.2744 -4.1729
8 6 0.6166 1.2921 -4.7378
9 35 -0.0131 2.1827 -6.2826
10 6 1.8250 1.6577 -4.1727
11 6 2.2849 1.0065 -3.0435
12 7 2.0196 -0.6926 1.1995
13 6 1.5486 -0.0264 2.4211
14 6 2.0781 -0.7743 3.6464
15 6 1.5944 -0.0913 4.8996
16 1 0.9720 0.7885 4.8292
17 6 1.9473 -0.5889 6.1360
18 7 2.7057 -1.6600 6.2217
19 14 1.3472 0.2573 7.6895
20 1 0.0461 -0.3283 8.1011
21 1 2.3425 0.0639 8.7744
22 1 1.1759 1.7089 7.4277
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3633 0.5138 0.8900
26 1 1.6767 1.9563 0.8900
27 1 3.1301 1.4425 0.0005
28 1 1.6767 1.9563 -0.8900
29 1 3.1301 -0.7217 -1.2490
30 1 1.6767 -1.7489 -1.2492
31 1 -0.2490 -1.1775 -2.6085
32 1 -1.0742 -0.0117 -4.6141
33 1 2.4091 2.4519 -4.6136
34 1 3.2285 1.2916 -2.6025
35 1 1.7502 -1.6648 1.1909
36 1 1.9121 1.0011 2.4379
37 1 0.4587 -0.0266 2.4379
38 1 1.7148 -1.8019 3.6297
39 1 3.1679 -0.7739 3.6294
40 1 2.9537 -2.0104 7.0916
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000109818715.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:12:17
Heat of formation + Delta-G solvation = 7.930102 kcal
Electronic energy + Delta-G solvation = -19288.448380 eV
Core-core repulsion = 16341.408816 eV
Total energy + Delta-G solvation = -2947.039564 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 325.074 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.04368 -37.79846 -34.08077 -32.82567 -31.38578 -31.36159 -29.76705 -28.07186
-27.16116 -26.55597 -24.03663 -22.96354 -21.67829 -20.41348 -18.93704 -16.71880
-16.34340 -15.73753 -15.53907 -15.41531 -14.50560 -14.41914 -14.05206 -13.83475
-13.46667 -13.29477 -13.07217 -12.75674 -12.19334 -11.93480 -11.80916 -11.69687
-11.43629 -11.24934 -11.19491 -10.98186 -10.89483 -10.84008 -10.55085 -10.51730
-10.42720 -9.91529 -9.37023 -9.22875 -9.13648 -8.71168 -8.35414 -7.78563
-5.99976 -4.02393 0.85306 1.07160 1.37610 3.31476 3.36385 3.37863
3.41155 4.37659 4.50582 4.51097 4.65652 4.91918 5.00742 5.03539
5.12028 5.20026 5.35317 5.36106 5.45148 5.60070 5.73407 5.79039
5.87462 5.95575 5.98101 6.00431 6.05872 6.14361 6.25646 6.37982
6.42153 6.45320 6.57054 6.61927 7.02159 7.50871 7.73223 7.83569
7.97015 8.08946 8.44011 9.05018 9.61388 11.11410
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.042049 B = 0.002092 C = 0.002065
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 665.726700 B =13382.905644 C =13555.471401
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.116 3.884
3 C -0.141 4.141
4 C -0.074 4.074
5 C -0.048 4.048
6 C -0.111 4.111
7 C -0.091 4.091
8 C -0.098 4.098
9 Br -0.061 7.061
10 C -0.091 4.091
11 C -0.108 4.108
12 N -0.681 5.681
13 C 0.063 3.937
14 C 0.025 3.975
15 C -0.521 4.521
16 H 0.053 0.947
17 C 0.058 3.942
18 N -0.893 5.893
19 Si 0.892 3.108
20 H -0.281 1.281
21 H -0.286 1.286
22 H -0.274 1.274
23 H 0.057 0.943
24 H 0.051 0.949
25 H 0.062 0.938
26 H 0.059 0.941
27 H 0.061 0.939
28 H 0.054 0.946
29 H 0.084 0.916
30 H 0.073 0.927
31 H 0.130 0.870
32 H 0.130 0.870
33 H 0.130 0.870
34 H 0.133 0.867
35 H 0.335 0.665
36 H 0.061 0.939
37 H 0.019 0.981
38 H 0.012 0.988
39 H 0.024 0.976
40 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.648 5.508 -27.402 28.334
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.243 4.243
2 C 0.024 3.976
3 C -0.199 4.199
4 C -0.112 4.112
5 C -0.049 4.049
6 C -0.130 4.130
7 C -0.111 4.111
8 C -0.177 4.177
9 Br 0.024 6.976
10 C -0.111 4.111
11 C -0.127 4.127
12 N -0.311 5.311
13 C -0.065 4.065
14 C -0.012 4.012
15 C -0.560 4.560
16 H 0.072 0.928
17 C -0.144 4.144
18 N -0.532 5.532
19 Si 0.720 3.280
20 H -0.207 1.207
21 H -0.212 1.212
22 H -0.199 1.199
23 H 0.076 0.924
24 H 0.071 0.929
25 H 0.081 0.919
26 H 0.078 0.922
27 H 0.080 0.920
28 H 0.073 0.927
29 H 0.103 0.897
30 H 0.092 0.908
31 H 0.148 0.852
32 H 0.147 0.853
33 H 0.148 0.852
34 H 0.151 0.849
35 H 0.153 0.847
36 H 0.079 0.921
37 H 0.037 0.963
38 H 0.031 0.969
39 H 0.043 0.957
40 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -4.181 6.058 -27.843 28.799
hybrid contribution -1.205 -0.053 1.286 1.763
sum -5.386 6.005 -26.557 27.755
Atomic orbital electron populations
1.22644 0.97602 1.01725 1.02359 1.20770 0.91930 0.94728 0.90131
1.21949 1.01632 0.94772 1.01515 1.20719 1.01875 0.98357 0.90258
1.20054 0.93965 0.95171 0.95704 1.21122 0.96070 1.00337 0.95423
1.21078 0.99428 0.94662 0.95928 1.21730 0.98651 1.00856 0.96507
1.96699 1.88420 1.77501 1.34974 1.21098 0.94380 0.99703 0.95870
1.21150 1.00495 0.95836 0.95239 1.60759 1.63209 1.05857 1.01260
1.22232 0.96327 0.98773 0.89172 1.19065 0.97149 0.95033 0.89950
1.21174 1.31435 1.12320 0.91025 0.92838 1.25000 0.95165 0.95075
0.99133 1.69973 1.36460 1.22431 1.24381 0.86602 0.78477 0.79941
0.83026 1.20720 1.21187 1.19898 0.92416 0.92943 0.91894 0.92180
0.91991 0.92730 0.89721 0.90824 0.85165 0.85256 0.85184 0.84888
0.84717 0.92052 0.96265 0.96950 0.95748 0.93011
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.38 7.65 37.16 0.28 -2.09 16
2 C 0.12 1.54 0.74 -131.60 -0.10 1.44 16
3 C -0.14 -1.88 7.64 37.16 0.28 -1.59 16
4 C -0.07 -0.82 4.72 -27.88 -0.13 -0.95 16
5 C -0.05 -0.48 4.00 -104.62 -0.42 -0.90 16
6 C -0.11 -1.05 7.90 -39.59 -0.31 -1.36 16
7 C -0.09 -0.84 9.79 -39.56 -0.39 -1.23 16
8 C -0.10 -0.94 6.22 -39.52 -0.25 -1.19 16
9 Br -0.06 -0.54 33.70 -68.01 -2.29 -2.83 16
10 C -0.09 -0.84 9.79 -39.55 -0.39 -1.23 16
11 C -0.11 -1.03 7.88 -39.59 -0.31 -1.34 16
12 N -0.68 -11.42 6.09 -99.96 -0.61 -12.03 16
13 C 0.06 1.28 4.84 -3.82 -0.02 1.26 16
14 C 0.03 0.66 5.23 -27.88 -0.15 0.51 16
15 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16
16 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16
17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16
18 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16
19 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16
20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16
23 H 0.06 0.68 6.19 -51.93 -0.32 0.35 16
24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
25 H 0.06 0.92 6.40 -51.93 -0.33 0.59 16
26 H 0.06 0.89 6.40 -51.93 -0.33 0.56 16
27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16
28 H 0.05 0.64 6.17 -51.93 -0.32 0.32 16
29 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16
30 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16
31 H 0.13 1.08 8.04 -52.48 -0.42 0.66 16
32 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16
33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16
34 H 0.13 1.13 8.02 -52.49 -0.42 0.71 16
35 H 0.34 5.47 8.72 -39.30 -0.34 5.12 16
36 H 0.06 1.27 6.30 -51.93 -0.33 0.95 16
37 H 0.02 0.39 6.30 -51.93 -0.33 0.06 16
38 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16
39 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16
40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
LS Contribution 338.38 15.07 5.10 5.10
Total: -1.00 -29.63 338.38 -10.45 -40.08
By element:
Atomic # 1 Polarization: 7.40 SS G_CDS: -6.06 Total: 1.33 kcal
Atomic # 6 Polarization: -19.85 SS G_CDS: -2.30 Total: -22.15 kcal
Atomic # 7 Polarization: -38.30 SS G_CDS: 0.13 Total: -38.17 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal
Atomic # 35 Polarization: -0.54 SS G_CDS: -2.29 Total: -2.83 kcal
Total LS contribution 5.10 Total: 5.10 kcal
Total: -29.63 -10.45 -40.08 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000109818715.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.015 kcal
(2) G-P(sol) polarization free energy of solvation -29.634 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.381 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.930 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds