Wall clock time and date at job start Tue Mar 31 2020 14:12:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52997 * 109.47164 * 2 1
4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3
5 5 C 1.50699 * 109.47078 * 60.00337 * 4 2 1
6 6 C 1.38242 * 119.99115 * 269.72231 * 5 4 2
7 7 C 1.38215 * 120.01191 * 179.76471 * 6 5 4
8 8 C 1.38325 * 119.99080 * 0.51088 * 7 6 5
9 9 Br 1.89101 * 120.01427 * 179.72086 * 8 7 6
10 10 C 1.38327 * 119.97809 * 359.74593 * 8 7 6
11 11 C 1.38224 * 119.98877 * 359.97438 * 10 8 7
12 12 N 1.46902 * 109.46626 * 120.00172 * 2 1 3
13 13 C 1.46898 * 110.99897 * 299.99595 * 12 2 1
14 14 C 1.53007 * 109.47117 * 180.02562 * 13 12 2
15 15 C 1.50698 * 109.47373 * 180.02562 * 14 13 12
16 16 H 1.08005 * 119.99642 * 359.97438 * 15 14 13
17 17 C 1.37876 * 120.00263 * 180.02562 * 15 14 13
18 18 N 1.31511 * 119.99529 * 359.97438 * 17 15 14
19 19 Si 1.86801 * 120.00138 * 180.02562 * 17 15 14
20 20 H 1.48496 * 109.47289 * 89.99489 * 19 17 15
21 21 H 1.48497 * 109.46594 * 209.99962 * 19 17 15
22 22 H 1.48498 * 109.46725 * 329.99717 * 19 17 15
23 23 H 1.09001 * 109.47002 * 59.99738 * 1 2 3
24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3
25 25 H 1.09000 * 109.47050 * 300.00004 * 1 2 3
26 26 H 1.09000 * 109.47140 * 60.00051 * 3 2 1
27 27 H 1.09001 * 109.47230 * 179.97438 * 3 2 1
28 28 H 1.09001 * 109.47375 * 300.00034 * 3 2 1
29 29 H 1.09002 * 109.47153 * 180.02562 * 4 2 1
30 30 H 1.08996 * 109.46952 * 300.00302 * 4 2 1
31 31 H 1.08003 * 119.99399 * 0.02562 * 6 5 4
32 32 H 1.08006 * 120.00729 * 180.23393 * 7 6 5
33 33 H 1.07997 * 120.00834 * 179.97438 * 10 8 7
34 34 H 1.07998 * 119.99504 * 179.97438 * 11 10 8
35 35 H 1.00893 * 111.00154 * 63.95510 * 12 2 1
36 36 H 1.09005 * 109.47558 * 300.00065 * 13 12 2
37 37 H 1.08999 * 109.47385 * 60.00731 * 13 12 2
38 38 H 1.09005 * 109.46499 * 300.00150 * 14 13 12
39 39 H 1.08999 * 109.47382 * 59.99850 * 14 13 12
40 40 H 0.97009 * 120.00060 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0401 -0.7213 -1.2492
5 6 1.5378 -0.0109 -2.4797
6 6 0.3326 -0.3802 -3.0473
7 6 -0.1308 0.2744 -4.1729
8 6 0.6166 1.2921 -4.7378
9 35 -0.0131 2.1827 -6.2826
10 6 1.8250 1.6577 -4.1727
11 6 2.2849 1.0065 -3.0435
12 7 2.0196 -0.6926 1.1995
13 6 1.5486 -0.0264 2.4211
14 6 2.0781 -0.7743 3.6464
15 6 1.5944 -0.0913 4.8996
16 1 0.9720 0.7885 4.8292
17 6 1.9473 -0.5889 6.1360
18 7 2.7057 -1.6600 6.2217
19 14 1.3472 0.2573 7.6895
20 1 0.0461 -0.3283 8.1011
21 1 2.3425 0.0639 8.7744
22 1 1.1759 1.7089 7.4277
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3633 0.5138 0.8900
26 1 1.6767 1.9563 0.8900
27 1 3.1301 1.4425 0.0005
28 1 1.6767 1.9563 -0.8900
29 1 3.1301 -0.7217 -1.2490
30 1 1.6767 -1.7489 -1.2492
31 1 -0.2490 -1.1775 -2.6085
32 1 -1.0742 -0.0117 -4.6141
33 1 2.4091 2.4519 -4.6136
34 1 3.2285 1.2916 -2.6025
35 1 1.7502 -1.6648 1.1909
36 1 1.9121 1.0011 2.4379
37 1 0.4587 -0.0266 2.4379
38 1 1.7148 -1.8019 3.6297
39 1 3.1679 -0.7739 3.6294
40 1 2.9537 -2.0104 7.0916
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000109818715.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:12:17
Heat of formation + Delta-G solvation = -7.874996 kcal
Electronic energy + Delta-G solvation = -19289.133740 eV
Core-core repulsion = 16341.408816 eV
Total energy + Delta-G solvation = -2947.724924 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 325.074 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.87085 -38.91027 -35.73158 -34.29612 -32.65526 -32.06618 -30.83205 -29.61489
-28.23030 -27.54892 -25.87417 -23.67062 -22.86417 -21.87455 -20.07927 -18.45400
-17.46063 -16.92948 -16.48520 -16.35699 -16.22217 -15.82497 -15.21503 -14.80311
-14.41982 -14.36388 -14.21584 -13.99123 -13.74691 -13.30871 -13.11183 -12.85328
-12.78049 -12.69977 -12.44259 -12.24538 -12.08008 -11.93442 -11.83201 -11.68436
-11.44392 -11.31134 -11.23892 -11.15999 -10.55224 -9.93385 -9.48330 -9.17754
-8.19729 -6.30763 0.11536 0.37168 0.67293 1.40086 1.41417 1.52532
2.40506 2.62859 3.13678 3.30315 3.79422 3.94294 3.98913 4.03844
4.08519 4.29048 4.39193 4.44752 4.53057 4.64663 4.71444 4.75043
4.81108 4.85776 4.97584 4.99788 5.07478 5.08278 5.17640 5.25886
5.28594 5.34595 5.39439 5.48889 5.66674 5.71717 5.82811 5.88309
6.18608 6.34759 6.62653 6.87084 7.38379 8.92265
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.042049 B = 0.002092 C = 0.002065
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 665.726700 B =13382.905644 C =13555.471401
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.115 3.885
3 C -0.138 4.138
4 C -0.065 4.065
5 C -0.056 4.056
6 C -0.113 4.113
7 C -0.095 4.095
8 C -0.107 4.107
9 Br -0.057 7.057
10 C -0.095 4.095
11 C -0.112 4.112
12 N -0.685 5.685
13 C 0.085 3.915
14 C 0.032 3.968
15 C -0.543 4.543
16 H 0.058 0.942
17 C 0.001 3.999
18 N -0.931 5.931
19 Si 0.964 3.036
20 H -0.272 1.272
21 H -0.282 1.282
22 H -0.264 1.264
23 H 0.072 0.928
24 H 0.058 0.942
25 H 0.042 0.958
26 H 0.041 0.959
27 H 0.059 0.941
28 H 0.072 0.928
29 H 0.082 0.918
30 H 0.081 0.919
31 H 0.142 0.858
32 H 0.142 0.858
33 H 0.143 0.857
34 H 0.141 0.859
35 H 0.338 0.662
36 H 0.058 0.942
37 H 0.021 0.979
38 H -0.010 1.010
39 H -0.007 1.007
40 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.541 6.308 -28.269 29.489
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.237 4.237
2 C 0.025 3.975
3 C -0.196 4.196
4 C -0.103 4.103
5 C -0.057 4.057
6 C -0.132 4.132
7 C -0.115 4.115
8 C -0.186 4.186
9 Br 0.028 6.972
10 C -0.115 4.115
11 C -0.131 4.131
12 N -0.316 5.316
13 C -0.044 4.044
14 C -0.005 4.005
15 C -0.582 4.582
16 H 0.076 0.924
17 C -0.197 4.197
18 N -0.571 5.571
19 Si 0.789 3.211
20 H -0.197 1.197
21 H -0.207 1.207
22 H -0.188 1.188
23 H 0.091 0.909
24 H 0.077 0.923
25 H 0.061 0.939
26 H 0.060 0.940
27 H 0.078 0.922
28 H 0.091 0.909
29 H 0.101 0.899
30 H 0.099 0.901
31 H 0.159 0.841
32 H 0.160 0.840
33 H 0.160 0.840
34 H 0.159 0.841
35 H 0.156 0.844
36 H 0.076 0.924
37 H 0.039 0.961
38 H 0.008 0.992
39 H 0.011 0.989
40 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -5.081 6.865 -28.735 29.977
hybrid contribution -0.909 -0.313 1.464 1.752
sum -5.990 6.551 -27.270 28.679
Atomic orbital electron populations
1.22568 0.96936 1.02115 1.02071 1.20871 0.92450 0.94693 0.89518
1.21928 1.01476 0.94706 1.01447 1.20584 1.01728 0.98578 0.89407
1.19976 0.94517 0.95621 0.95577 1.21270 0.95904 1.00538 0.95440
1.21270 0.99940 0.94453 0.95849 1.21914 0.98911 1.01054 0.96759
1.96705 1.88363 1.77408 1.34700 1.21276 0.94450 0.99969 0.95773
1.21285 1.00809 0.95659 0.95350 1.60656 1.63596 1.06111 1.01238
1.21789 0.95989 0.97859 0.88776 1.18921 0.95065 0.94401 0.92140
1.21612 1.31591 1.12662 0.92295 0.92376 1.25955 0.95175 0.95711
1.02885 1.70105 1.37619 1.23940 1.25428 0.85459 0.78127 0.79143
0.78392 1.19729 1.20700 1.18823 0.90896 0.92256 0.93859 0.94027
0.92219 0.90934 0.89915 0.90053 0.84051 0.83969 0.83959 0.84089
0.84389 0.92403 0.96102 0.99152 0.98869 0.92774
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -4.33 7.65 71.98 0.55 -3.78 16
2 C 0.12 2.94 0.74 3.53 0.00 2.95 16
3 C -0.14 -3.53 7.64 71.98 0.55 -2.98 16
4 C -0.07 -1.33 4.72 29.85 0.14 -1.19 16
5 C -0.06 -1.01 4.00 -19.86 -0.08 -1.09 16
6 C -0.11 -1.87 7.90 22.27 0.18 -1.70 16
7 C -0.10 -1.56 9.79 22.28 0.22 -1.34 16
8 C -0.11 -1.85 6.22 22.31 0.14 -1.71 16
9 Br -0.06 -0.92 33.70 -20.37 -0.69 -1.60 16
10 C -0.10 -1.57 9.79 22.29 0.22 -1.35 16
11 C -0.11 -1.92 7.88 22.27 0.18 -1.74 16
12 N -0.69 -22.94 6.09 -470.16 -2.86 -25.80 16
13 C 0.08 3.49 4.84 86.31 0.42 3.91 16
14 C 0.03 1.71 5.23 29.85 0.16 1.87 16
15 C -0.54 -31.12 9.11 25.60 0.23 -30.89 16
16 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16
17 C 0.00 0.04 5.46 84.66 0.46 0.50 16
18 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16
19 Si 0.96 44.38 29.54 68.60 2.03 46.41 16
20 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16
21 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16
22 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16
23 H 0.07 1.55 6.19 -2.39 -0.01 1.54 16
24 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16
25 H 0.04 1.22 6.40 -2.39 -0.02 1.21 16
26 H 0.04 1.21 6.40 -2.39 -0.02 1.19 16
27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16
28 H 0.07 1.58 6.17 -2.39 -0.01 1.56 16
29 H 0.08 1.73 8.09 -2.39 -0.02 1.71 16
30 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16
31 H 0.14 1.99 8.04 -2.91 -0.02 1.96 16
32 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16
33 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16
34 H 0.14 2.13 8.02 -2.91 -0.02 2.10 16
35 H 0.34 10.99 8.72 -89.70 -0.78 10.21 16
36 H 0.06 2.43 6.30 -2.38 -0.02 2.41 16
37 H 0.02 0.85 6.30 -2.39 -0.02 0.84 16
38 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16
39 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16
40 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16
Total: -1.00 -63.41 338.38 2.37 -61.04
By element:
Atomic # 1 Polarization: 14.90 SS G_CDS: 0.25 Total: 15.14 kcal
Atomic # 6 Polarization: -41.90 SS G_CDS: 3.36 Total: -38.54 kcal
Atomic # 7 Polarization: -79.88 SS G_CDS: -2.58 Total: -82.45 kcal
Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal
Atomic # 35 Polarization: -0.92 SS G_CDS: -0.69 Total: -1.60 kcal
Total: -63.41 2.37 -61.04 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000109818715.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.168 kcal
(2) G-P(sol) polarization free energy of solvation -63.411 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.243 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.043 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.875 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds