Wall clock time and date at job start Tue Mar 31 2020 13:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31366 * 1 3 3 Si 1.86804 * 120.00066 * 2 1 4 4 H 1.48500 * 109.47003 * 239.99980 * 3 2 1 5 5 H 1.48498 * 109.46994 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47632 * 120.00016 * 3 2 1 7 7 C 1.39039 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99949 * 179.97438 * 7 2 1 9 9 N 1.36882 * 119.99625 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99653 * 179.97438 * 9 7 2 11 11 O 1.21611 * 120.00594 * 0.02562 * 10 9 7 12 12 C 1.47548 * 119.99939 * 180.02562 * 10 9 7 13 13 C 1.39774 * 120.08629 * 180.02562 * 12 10 9 14 14 C 1.37698 * 119.91753 * 179.97438 * 13 12 10 15 15 C 1.39071 * 120.08621 * 359.97438 * 14 13 12 16 16 N 1.39830 * 119.92098 * 180.02562 * 15 14 13 17 17 C 1.35837 * 126.10447 * 180.02562 * 16 15 14 18 18 C 1.35291 * 107.61725 * 179.97438 * 17 16 15 19 19 C 1.39957 * 107.96290 * 0.02562 * 18 17 16 20 20 C 1.50706 * 125.81017 * 179.97438 * 19 18 17 21 21 F 1.39903 * 109.46746 * 89.99943 * 20 19 18 22 22 F 1.39901 * 109.46962 * 209.99724 * 20 19 18 23 23 F 1.39894 * 109.47464 * 329.99804 * 20 19 18 24 24 N 1.30824 * 108.36909 * 0.25943 * 19 18 17 25 25 C 1.39076 * 120.16849 * 0.27235 * 15 14 13 26 26 C 1.37713 * 120.07901 * 359.49275 * 25 15 14 27 27 H 0.97008 * 120.00114 * 0.02562 * 1 2 3 28 28 H 0.97000 * 120.00355 * 0.02562 * 9 7 2 29 29 H 1.08006 * 120.04497 * 359.95965 * 13 12 10 30 30 H 1.07999 * 119.96094 * 179.97438 * 14 13 12 31 31 H 1.08001 * 126.19495 * 359.97438 * 17 16 15 32 32 H 1.07990 * 126.01673 * 180.02562 * 18 17 16 33 33 H 1.07994 * 119.96346 * 179.74782 * 25 15 14 34 34 H 1.07999 * 120.03698 * 180.25252 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.1014 1.6964 -1.2125 5 1 1.2827 2.7465 -0.0006 6 1 3.1015 1.6965 1.2124 7 6 2.0089 -1.2041 0.0005 8 1 3.0888 -1.2040 0.0001 9 7 1.3245 -2.3895 0.0016 10 6 1.9984 -3.5566 0.0016 11 8 3.2145 -3.5567 0.0011 12 6 1.2607 -4.8345 0.0022 13 6 1.9577 -6.0460 0.0027 14 6 1.2658 -7.2365 0.0038 15 6 -0.1249 -7.2345 0.0049 16 7 -0.8241 -8.4454 0.0065 17 6 -2.1748 -8.5898 0.0072 18 6 -2.4449 -9.9155 0.0082 19 6 -1.2265 -10.6042 0.0087 20 6 -1.0603 -12.1021 0.0104 21 9 -1.0091 -12.5670 -1.3081 22 9 0.1267 -12.4388 0.6700 23 9 -2.1439 -12.6909 0.6708 24 7 -0.2566 -9.7262 0.0137 25 6 -0.8222 -6.0311 -0.0009 26 6 -0.1371 -4.8365 0.0029 27 1 -0.4851 0.8401 -0.0004 28 1 0.3545 -2.3895 0.0016 29 1 3.0378 -6.0484 0.0021 30 1 1.8037 -8.1730 0.0038 31 1 -2.9016 -7.7910 0.0069 32 1 -3.4275 -10.3634 0.0085 33 1 -1.9021 -6.0335 -0.0041 34 1 -0.6792 -3.9024 0.0026 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126675360.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:49 Heat of formation + Delta-G solvation = -75.543929 kcal Electronic energy + Delta-G solvation = -25519.409758 eV Core-core repulsion = 21004.380846 eV Total energy + Delta-G solvation = -4515.028912 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.43491 -47.97590 -47.91488 -42.00068 -39.44964 -37.64879 -34.30805 -33.88340 -31.84045 -31.19073 -30.53842 -29.73650 -27.01550 -25.31243 -23.49643 -23.00047 -21.42188 -20.93184 -19.71453 -18.84257 -18.81210 -18.49413 -18.32023 -17.49669 -16.67040 -15.69959 -15.23083 -14.91667 -14.82760 -14.75917 -14.65484 -14.35579 -14.25553 -14.06955 -14.06444 -13.97308 -13.78829 -13.72220 -13.41430 -13.11003 -12.58553 -12.55443 -12.18481 -11.74986 -11.49196 -11.25700 -10.96586 -10.64479 -10.59575 -10.43049 -9.76535 -9.57045 -9.03141 -8.67162 -8.28866 -8.16643 -6.73149 -4.03119 0.43297 1.39285 1.58573 1.61750 1.97464 2.48935 3.06202 3.12347 3.16331 3.32739 3.44890 3.61837 3.95877 4.07365 4.29275 4.30215 4.47412 4.68119 4.79724 4.92851 5.06366 5.12973 5.24221 5.37238 5.44669 5.53498 5.74208 5.91399 6.00972 6.16431 6.35103 6.58827 6.65497 6.93393 7.01629 7.27094 7.79171 8.32895 8.89495 9.23518 9.80548 10.42986 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.038235 B = 0.002170 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.143688 B =12900.292476 C =13457.933252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.025 3.975 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.292 4.292 8 H 0.110 0.890 9 N -0.536 5.536 10 C 0.458 3.542 11 O -0.596 6.596 12 C -0.086 4.086 13 C -0.058 4.058 14 C -0.114 4.114 15 C 0.127 3.873 16 N -0.289 5.289 17 C 0.063 3.937 18 C -0.225 4.225 19 C -0.022 4.022 20 C 0.559 3.441 21 F -0.168 7.168 22 F -0.167 7.167 23 F -0.165 7.165 24 N -0.229 5.229 25 C -0.128 4.128 26 C -0.084 4.084 27 H 0.279 0.721 28 H 0.394 0.606 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.192 0.808 32 H 0.166 0.834 33 H 0.132 0.868 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.518 -18.095 0.020 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.180 4.180 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.422 4.422 8 H 0.128 0.872 9 N -0.170 5.170 10 C 0.246 3.754 11 O -0.483 6.483 12 C -0.091 4.091 13 C -0.078 4.078 14 C -0.134 4.134 15 C 0.035 3.965 16 N -0.065 5.065 17 C -0.079 4.079 18 C -0.253 4.253 19 C -0.189 4.189 20 C 0.503 3.497 21 F -0.149 7.149 22 F -0.148 7.148 23 F -0.147 7.147 24 N -0.052 5.052 25 C -0.149 4.149 26 C -0.104 4.104 27 H 0.089 0.911 28 H 0.229 0.771 29 H 0.162 0.838 30 H 0.156 0.844 31 H 0.209 0.791 32 H 0.184 0.816 33 H 0.150 0.850 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.574 -17.658 0.025 19.214 hybrid contribution -1.222 0.487 -0.005 1.316 sum -8.796 -17.171 0.019 19.293 Atomic orbital electron populations 1.69570 1.06226 1.29215 1.47316 1.25438 0.95742 1.00318 0.96482 0.85792 0.78855 0.79519 0.79480 1.19489 1.20653 1.19483 1.19868 0.93902 0.82050 1.46331 0.87208 1.41944 1.09535 1.04846 1.60641 1.17585 0.87553 0.83106 0.87127 1.90623 1.13067 1.86804 1.57819 1.20534 0.93290 0.95405 0.99838 1.21148 1.01176 0.89779 0.95725 1.20797 0.91172 0.99501 1.01904 1.17612 0.91766 0.80856 1.06277 1.45981 1.04527 1.03764 1.52228 1.22894 0.85252 0.98692 1.01083 1.21238 0.98393 0.91876 1.13834 1.22104 0.94431 0.93349 1.09022 1.16816 0.74126 0.84646 0.74154 1.93252 1.96072 1.89848 1.35756 1.93250 1.47215 1.93401 1.80923 1.93222 1.55202 1.85285 1.80970 1.77382 1.20489 0.87140 1.20171 1.20619 0.99902 0.90027 1.04330 1.21255 0.93585 0.97624 0.97914 0.91118 0.77110 0.83797 0.84431 0.79078 0.81625 0.85029 0.84199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.17 13.05 55.50 0.72 -21.45 16 2 C 0.02 0.61 5.50 -17.45 -0.10 0.51 16 3 Si 0.94 19.58 29.55 -169.99 -5.02 14.56 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.29 -7.67 9.68 -15.00 -0.15 -7.82 16 8 H 0.11 3.01 7.15 -52.49 -0.38 2.64 16 9 N -0.54 -12.94 5.23 -11.92 -0.06 -13.00 16 10 C 0.46 10.68 7.71 -12.47 -0.10 10.59 16 11 O -0.60 -15.96 15.91 5.27 0.08 -15.87 16 12 C -0.09 -1.58 5.88 -104.95 -0.62 -2.20 16 13 C -0.06 -0.96 9.58 -39.20 -0.38 -1.34 16 14 C -0.11 -1.66 9.64 -39.47 -0.38 -2.04 16 15 C 0.13 1.72 6.69 -83.59 -0.56 1.16 16 16 N -0.29 -3.66 3.81 -10.54 -0.04 -3.70 16 17 C 0.06 0.59 10.81 -16.83 -0.18 0.41 16 18 C -0.22 -2.07 10.42 -39.99 -0.42 -2.49 16 19 C -0.02 -0.26 6.56 -82.37 -0.54 -0.80 16 20 C 0.56 5.89 3.55 36.01 0.13 6.02 16 21 F -0.17 -1.79 17.30 2.25 0.04 -1.75 16 22 F -0.17 -1.93 17.25 2.25 0.04 -1.89 16 23 F -0.17 -1.56 17.03 2.25 0.04 -1.52 16 24 N -0.23 -3.13 11.77 33.69 0.40 -2.74 16 25 C -0.13 -1.60 9.44 -39.46 -0.37 -1.97 16 26 C -0.08 -1.26 9.53 -39.20 -0.37 -1.64 16 27 H 0.28 6.58 8.31 -40.82 -0.34 6.24 16 28 H 0.39 8.82 5.92 -40.82 -0.24 8.58 16 29 H 0.14 2.41 7.64 -52.48 -0.40 2.01 16 30 H 0.14 1.88 7.68 -52.49 -0.40 1.48 16 31 H 0.19 1.05 7.04 -52.49 -0.37 0.68 16 32 H 0.17 1.04 8.06 -52.49 -0.42 0.61 16 33 H 0.13 1.17 6.72 -52.49 -0.35 0.81 16 34 H 0.14 2.02 6.39 -52.49 -0.34 1.68 16 LS Contribution 322.13 15.07 4.85 4.85 Total: -1.00 -30.11 322.13 -5.01 -35.12 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -2.04 Total: 9.00 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -4.03 Total: -1.60 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 1.02 Total: -40.88 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: 0.08 Total: -15.87 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.12 Total: -5.17 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.11 -5.01 -35.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126675360.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.420 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds