Wall clock time and date at job start Tue Mar 31 2020 13:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31366 * 1 3 3 Si 1.86804 * 120.00066 * 2 1 4 4 H 1.48500 * 109.47003 * 239.99980 * 3 2 1 5 5 H 1.48498 * 109.46994 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47632 * 120.00016 * 3 2 1 7 7 C 1.39039 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99949 * 179.97438 * 7 2 1 9 9 N 1.36882 * 119.99625 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99653 * 179.97438 * 9 7 2 11 11 O 1.21611 * 120.00594 * 0.02562 * 10 9 7 12 12 C 1.47548 * 119.99939 * 180.02562 * 10 9 7 13 13 C 1.39774 * 120.08629 * 180.02562 * 12 10 9 14 14 C 1.37698 * 119.91753 * 179.97438 * 13 12 10 15 15 C 1.39071 * 120.08621 * 359.97438 * 14 13 12 16 16 N 1.39830 * 119.92098 * 180.02562 * 15 14 13 17 17 C 1.35837 * 126.10447 * 180.02562 * 16 15 14 18 18 C 1.35291 * 107.61725 * 179.97438 * 17 16 15 19 19 C 1.39957 * 107.96290 * 0.02562 * 18 17 16 20 20 C 1.50706 * 125.81017 * 179.97438 * 19 18 17 21 21 F 1.39903 * 109.46746 * 89.99943 * 20 19 18 22 22 F 1.39901 * 109.46962 * 209.99724 * 20 19 18 23 23 F 1.39894 * 109.47464 * 329.99804 * 20 19 18 24 24 N 1.30824 * 108.36909 * 0.25943 * 19 18 17 25 25 C 1.39076 * 120.16849 * 0.27235 * 15 14 13 26 26 C 1.37713 * 120.07901 * 359.49275 * 25 15 14 27 27 H 0.97008 * 120.00114 * 0.02562 * 1 2 3 28 28 H 0.97000 * 120.00355 * 0.02562 * 9 7 2 29 29 H 1.08006 * 120.04497 * 359.95965 * 13 12 10 30 30 H 1.07999 * 119.96094 * 179.97438 * 14 13 12 31 31 H 1.08001 * 126.19495 * 359.97438 * 17 16 15 32 32 H 1.07990 * 126.01673 * 180.02562 * 18 17 16 33 33 H 1.07994 * 119.96346 * 179.74782 * 25 15 14 34 34 H 1.07999 * 120.03698 * 180.25252 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.1014 1.6964 -1.2125 5 1 1.2827 2.7465 -0.0006 6 1 3.1015 1.6965 1.2124 7 6 2.0089 -1.2041 0.0005 8 1 3.0888 -1.2040 0.0001 9 7 1.3245 -2.3895 0.0016 10 6 1.9984 -3.5566 0.0016 11 8 3.2145 -3.5567 0.0011 12 6 1.2607 -4.8345 0.0022 13 6 1.9577 -6.0460 0.0027 14 6 1.2658 -7.2365 0.0038 15 6 -0.1249 -7.2345 0.0049 16 7 -0.8241 -8.4454 0.0065 17 6 -2.1748 -8.5898 0.0072 18 6 -2.4449 -9.9155 0.0082 19 6 -1.2265 -10.6042 0.0087 20 6 -1.0603 -12.1021 0.0104 21 9 -1.0091 -12.5670 -1.3081 22 9 0.1267 -12.4388 0.6700 23 9 -2.1439 -12.6909 0.6708 24 7 -0.2566 -9.7262 0.0137 25 6 -0.8222 -6.0311 -0.0009 26 6 -0.1371 -4.8365 0.0029 27 1 -0.4851 0.8401 -0.0004 28 1 0.3545 -2.3895 0.0016 29 1 3.0378 -6.0484 0.0021 30 1 1.8037 -8.1730 0.0038 31 1 -2.9016 -7.7910 0.0069 32 1 -3.4275 -10.3634 0.0085 33 1 -1.9021 -6.0335 -0.0041 34 1 -0.6792 -3.9024 0.0026 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126675360.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:49 Heat of formation + Delta-G solvation = -93.724208 kcal Electronic energy + Delta-G solvation = -25520.198114 eV Core-core repulsion = 21004.380846 eV Total energy + Delta-G solvation = -4515.817268 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.26816 -48.78294 -48.77858 -42.87990 -40.89851 -39.21135 -36.16779 -35.01233 -33.52178 -32.39576 -31.55859 -30.85351 -28.11711 -26.94614 -24.68088 -24.12400 -22.52211 -21.85202 -21.21338 -20.25071 -19.67842 -19.65043 -19.27760 -18.50271 -18.25415 -16.91345 -16.61303 -16.29312 -15.88906 -15.66977 -15.61373 -15.57818 -15.53132 -15.22001 -15.18020 -14.91218 -14.90748 -14.81318 -14.46899 -14.44106 -13.78360 -13.68160 -13.48599 -13.35923 -12.97351 -12.57097 -12.41223 -12.13647 -11.99246 -11.75683 -11.56775 -10.58176 -10.42834 -10.19849 -10.14627 -9.33531 -8.58676 -6.01971 -0.65758 0.21657 0.57680 0.68777 1.20722 1.42226 1.42438 1.52622 1.63685 2.01093 2.25130 2.48881 2.73317 2.80022 3.03507 3.24201 3.25721 3.41396 3.63486 3.83376 3.88538 4.09744 4.21410 4.31000 4.41891 4.46753 4.58341 4.86693 4.96250 5.03040 5.16522 5.32247 5.36667 5.47676 5.88354 5.93807 6.09314 6.47038 6.99881 7.39561 7.97079 8.57835 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.038235 B = 0.002170 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.143688 B =12900.292476 C =13457.933252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.005 4.005 3 Si 0.996 3.004 4 H -0.271 1.271 5 H -0.266 1.266 6 H -0.271 1.271 7 C -0.338 4.338 8 H 0.083 0.917 9 N -0.545 5.545 10 C 0.459 3.541 11 O -0.639 6.639 12 C -0.120 4.120 13 C -0.059 4.059 14 C -0.120 4.120 15 C 0.149 3.851 16 N -0.308 5.308 17 C 0.073 3.927 18 C -0.220 4.220 19 C -0.026 4.026 20 C 0.563 3.437 21 F -0.169 7.169 22 F -0.176 7.176 23 F -0.156 7.156 24 N -0.271 5.271 25 C -0.112 4.112 26 C -0.071 4.071 27 H 0.284 0.716 28 H 0.400 0.600 29 H 0.130 0.870 30 H 0.143 0.857 31 H 0.237 0.763 32 H 0.199 0.801 33 H 0.183 0.817 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.817 -19.318 0.026 23.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.207 4.207 3 Si 0.819 3.181 4 H -0.196 1.196 5 H -0.190 1.190 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.101 0.899 9 N -0.180 5.180 10 C 0.249 3.751 11 O -0.529 6.529 12 C -0.124 4.124 13 C -0.079 4.079 14 C -0.139 4.139 15 C 0.057 3.943 16 N -0.085 5.085 17 C -0.068 4.068 18 C -0.248 4.248 19 C -0.193 4.193 20 C 0.506 3.494 21 F -0.151 7.151 22 F -0.157 7.157 23 F -0.138 7.138 24 N -0.094 5.094 25 C -0.132 4.132 26 C -0.091 4.091 27 H 0.094 0.906 28 H 0.237 0.763 29 H 0.148 0.852 30 H 0.161 0.839 31 H 0.253 0.747 32 H 0.216 0.784 33 H 0.200 0.800 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.919 -18.922 0.032 21.847 hybrid contribution -0.327 0.451 -0.007 0.557 sum -11.245 -18.472 0.025 21.625 Atomic orbital electron populations 1.69606 1.06856 1.30148 1.47728 1.26128 0.96626 1.02532 0.95410 0.84939 0.77890 0.76160 0.79120 1.19592 1.19003 1.19583 1.19757 0.93145 0.83765 1.50056 0.89870 1.41865 1.09695 1.04583 1.61827 1.18396 0.87335 0.84560 0.84800 1.90569 1.15359 1.87904 1.59114 1.20181 0.94776 0.93138 1.04318 1.21041 1.00755 0.90161 0.95924 1.20788 0.92209 0.98668 1.02284 1.17740 0.91436 0.82061 1.03091 1.46000 1.05729 1.02988 1.53781 1.23749 0.84234 1.00077 0.98727 1.21730 0.98848 0.91751 1.12461 1.22433 0.95341 0.93488 1.08046 1.16758 0.74033 0.84514 0.74054 1.93250 1.96081 1.89845 1.35881 1.93234 1.47891 1.93464 1.81114 1.93241 1.54644 1.85114 1.80774 1.77361 1.21957 0.87971 1.22067 1.20968 1.02126 0.88021 1.02096 1.21335 0.91959 0.99268 0.96535 0.90580 0.76339 0.85172 0.83929 0.74686 0.78396 0.80010 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.58 13.05 21.68 0.28 -45.30 16 2 C 0.00 -0.24 5.50 84.95 0.47 0.22 16 3 Si 1.00 40.67 29.55 68.60 2.03 42.70 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.34 -18.62 9.68 84.10 0.81 -17.80 16 8 H 0.08 4.90 7.15 -2.91 -0.02 4.88 16 9 N -0.55 -27.42 5.23 -309.89 -1.62 -29.04 16 10 C 0.46 22.50 7.71 86.70 0.67 23.17 16 11 O -0.64 -36.44 15.91 -4.07 -0.06 -36.51 16 12 C -0.12 -4.48 5.88 -20.08 -0.12 -4.60 16 13 C -0.06 -1.99 9.58 22.51 0.22 -1.78 16 14 C -0.12 -3.39 9.64 22.34 0.22 -3.18 16 15 C 0.15 3.61 6.69 38.27 0.26 3.86 16 16 N -0.31 -6.68 3.81 -187.25 -0.71 -7.40 16 17 C 0.07 0.97 10.81 83.39 0.90 1.87 16 18 C -0.22 -3.03 10.42 22.01 0.23 -2.80 16 19 C -0.03 -0.53 6.56 43.13 0.28 -0.25 16 20 C 0.56 10.70 3.55 71.24 0.25 10.96 16 21 F -0.17 -3.31 17.30 44.97 0.78 -2.53 16 22 F -0.18 -3.88 17.25 44.97 0.78 -3.10 16 23 F -0.16 -2.54 17.03 44.97 0.77 -1.78 16 24 N -0.27 -6.82 11.77 -47.33 -0.56 -7.38 16 25 C -0.11 -2.33 9.44 22.35 0.21 -2.12 16 26 C -0.07 -2.02 9.53 22.52 0.21 -1.80 16 27 H 0.28 13.30 8.31 -92.70 -0.77 12.53 16 28 H 0.40 18.40 5.92 -92.71 -0.55 17.85 16 29 H 0.13 4.67 7.64 -2.91 -0.02 4.65 16 30 H 0.14 3.87 7.68 -2.91 -0.02 3.85 16 31 H 0.24 0.81 7.04 -2.91 -0.02 0.79 16 32 H 0.20 1.35 8.06 -2.92 -0.02 1.33 16 33 H 0.18 1.97 6.72 -2.91 -0.02 1.95 16 34 H 0.15 3.98 6.39 -2.91 -0.02 3.96 16 Total: -1.00 -69.68 322.13 6.94 -62.74 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.65 Total: 21.83 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 4.61 Total: 5.77 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -2.61 Total: -89.11 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -0.06 Total: -36.51 kcal Atomic # 9 Polarization: -9.73 SS G_CDS: 2.32 Total: -7.41 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -69.68 6.94 -62.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126675360.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.989 kcal (2) G-P(sol) polarization free energy of solvation -69.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds