Wall clock time and date at job start Tue Mar 31 2020 14:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46867 * 2 1 4 4 C 1.52998 * 109.46894 * 240.00299 * 2 1 3 5 5 C 1.50705 * 109.47232 * 59.99611 * 4 2 1 6 6 H 1.07995 * 119.99669 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99924 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00046 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99855 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47352 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47140 * 120.00379 * 9 7 5 12 12 H 1.48502 * 109.47222 * 240.00135 * 9 7 5 13 13 C 1.52991 * 109.47586 * 120.00313 * 2 1 3 14 14 N 1.46905 * 109.46991 * 299.99849 * 13 2 1 15 15 C 1.46901 * 110.99872 * 179.97438 * 14 13 2 16 16 C 1.50707 * 109.46944 * 180.02562 * 15 14 13 17 17 C 1.38259 * 119.99416 * 270.27876 * 16 15 14 18 18 C 1.38220 * 120.02067 * 180.23549 * 17 16 15 19 19 C 1.38238 * 120.00764 * 359.48336 * 18 17 16 20 20 C 1.38305 * 119.99297 * 0.26296 * 19 18 17 21 21 Br 1.89094 * 120.01387 * 179.97438 * 20 19 18 22 22 C 1.38191 * 119.99507 * 90.00188 * 16 15 14 23 23 H 1.09003 * 109.47133 * 299.99441 * 1 2 3 24 24 H 1.08991 * 109.47319 * 59.99697 * 1 2 3 25 25 H 1.09001 * 109.47154 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47018 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.46968 * 299.99892 * 3 2 1 28 28 H 1.08994 * 109.47007 * 60.00490 * 3 2 1 29 29 H 1.09000 * 109.47210 * 179.97438 * 4 2 1 30 30 H 1.09000 * 109.47336 * 299.99578 * 4 2 1 31 31 H 0.97007 * 119.99756 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47845 * 180.02562 * 13 2 1 33 33 H 1.09001 * 109.47275 * 59.99583 * 13 2 1 34 34 H 1.00895 * 111.00156 * 303.95272 * 14 13 2 35 35 H 1.09001 * 109.47462 * 60.00293 * 15 14 13 36 36 H 1.08996 * 109.47228 * 299.99980 * 15 14 13 37 37 H 1.07997 * 119.99226 * 359.97215 * 17 16 15 38 38 H 1.08002 * 119.99998 * 179.76945 * 18 17 16 39 39 H 1.08007 * 120.00835 * 180.23480 * 19 18 17 40 40 H 1.08002 * 120.00579 * 0.04011 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5375 -0.0108 -2.4797 6 1 0.9169 0.8675 -2.3805 7 6 1.8710 -0.4815 -3.7320 8 7 2.6271 -1.5508 -3.8527 9 14 1.2488 0.3995 -5.2571 10 1 0.4242 1.5664 -4.8530 11 1 2.4040 0.8663 -6.0650 12 1 0.4240 -0.5336 -6.0660 13 6 2.0401 -0.7213 1.2491 14 7 1.5505 -0.0288 2.4486 15 6 2.0211 -0.6953 3.6702 16 6 1.4995 0.0413 4.8771 17 6 2.2353 1.0743 5.4277 18 6 1.7598 1.7470 6.5375 19 6 0.5432 1.3943 7.0911 20 6 -0.1957 0.3645 6.5375 21 35 -1.8596 -0.1190 7.2947 22 6 0.2833 -0.3121 5.4298 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1299 -0.7208 -1.2496 30 1 1.6767 -1.7489 -1.2493 31 1 2.8614 -1.8821 -4.7338 32 1 3.1301 -0.7209 1.2494 33 1 1.6767 -1.7489 1.2491 34 1 1.8199 0.9435 2.4401 35 1 3.1110 -0.6955 3.6872 36 1 1.6573 -1.7226 3.6868 37 1 3.1839 1.3529 4.9931 38 1 2.3366 2.5514 6.9696 39 1 0.1698 1.9225 7.9560 40 1 -0.2932 -1.1165 4.9974 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135167216.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:05 Heat of formation + Delta-G solvation = 5.537567 kcal Electronic energy + Delta-G solvation = -19167.309511 eV Core-core repulsion = 16220.166199 eV Total energy + Delta-G solvation = -2947.143312 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.65031 -37.60589 -34.75611 -32.60965 -32.22819 -31.04581 -29.42296 -27.11680 -26.35084 -26.17568 -24.30049 -22.70356 -22.21525 -21.19087 -17.98409 -17.00157 -16.25909 -15.95267 -15.42210 -14.98592 -14.69652 -14.27042 -13.98588 -13.70908 -13.32779 -13.12389 -12.94598 -12.54418 -12.24428 -12.00360 -11.78634 -11.35771 -11.29540 -11.04848 -10.98010 -10.87577 -10.75266 -10.50148 -10.49489 -10.27348 -10.11312 -9.69309 -9.19067 -9.01311 -8.90321 -8.81141 -8.32069 -8.13943 -5.96478 -3.96449 0.86779 1.05671 1.41041 3.32447 3.35688 3.40441 3.44035 4.39726 4.49374 4.54918 4.71818 4.83050 5.04582 5.06623 5.23626 5.39530 5.48022 5.59233 5.69986 5.73655 5.76578 5.96303 5.97507 6.07200 6.22387 6.29002 6.33730 6.49557 6.57094 6.66339 6.78016 6.83178 7.18142 7.20356 7.26398 7.35886 7.61369 7.70445 7.85058 8.03949 8.48363 9.09183 9.66502 11.15235 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.025396 B = 0.002363 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.261295 B =11845.733121 C =12354.835890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.129 4.129 4 C 0.033 3.967 5 C -0.506 4.506 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.069 3.931 14 N -0.681 5.681 15 C 0.094 3.906 16 C -0.068 4.068 17 C -0.100 4.100 18 C -0.115 4.115 19 C -0.096 4.096 20 C -0.091 4.091 21 Br -0.056 7.056 22 C -0.069 4.069 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.012 0.988 30 H 0.015 0.985 31 H 0.258 0.742 32 H 0.024 0.976 33 H 0.067 0.933 34 H 0.340 0.660 35 H 0.039 0.961 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.032 4.420 25.851 26.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.059 4.059 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.059 4.059 14 N -0.313 5.313 15 C -0.035 4.035 16 C -0.070 4.070 17 C -0.119 4.119 18 C -0.134 4.134 19 C -0.116 4.116 20 C -0.170 4.170 21 Br 0.029 6.971 22 C -0.089 4.089 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.031 0.969 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.159 0.841 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.185 3.791 25.993 26.775 hybrid contribution 1.062 0.742 -1.118 1.711 sum -4.123 4.532 24.876 25.619 Atomic orbital electron populations 1.21599 0.94951 1.00594 1.00206 1.20630 0.95911 0.94990 0.94327 1.21772 0.99651 0.96770 1.00449 1.19130 0.95882 0.95221 0.90174 1.21277 1.30643 1.11902 0.90593 0.92229 1.25018 0.95414 0.95133 0.99074 1.69980 1.37378 1.23246 1.23172 0.86609 0.78592 0.79757 0.83491 1.19764 1.21208 1.21148 1.22148 0.96403 0.98205 0.89133 1.60621 1.63644 1.06460 1.00581 1.20912 0.97052 0.98029 0.87500 1.19909 0.94215 0.96385 0.96472 1.21243 0.99947 0.94975 0.95714 1.21116 0.95725 1.00098 0.96451 1.21082 0.94643 0.95932 0.99966 1.21789 0.94104 1.01250 0.99845 1.96715 1.24833 1.92406 1.83142 1.21035 0.95252 0.99186 0.93409 0.93888 0.92686 0.94161 0.94111 0.91680 0.94838 0.96916 0.96653 0.93228 0.95727 0.91410 0.84095 0.94321 0.90067 0.85550 0.85218 0.85268 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.24 8.06 37.16 0.30 -1.95 16 2 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 3 C -0.13 -2.36 7.89 37.16 0.29 -2.07 16 4 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -13.77 7.65 -34.44 -0.26 -14.03 16 6 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 13 C 0.07 1.16 4.65 -3.83 -0.02 1.14 16 14 N -0.68 -9.47 5.70 -115.06 -0.66 -10.13 16 15 C 0.09 1.09 5.81 -4.97 -0.03 1.06 16 16 C -0.07 -0.74 5.39 -104.63 -0.56 -1.30 16 17 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 18 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 19 C -0.10 -0.87 9.79 -39.56 -0.39 -1.26 16 20 C -0.09 -0.94 6.22 -39.52 -0.25 -1.19 16 21 Br -0.06 -0.55 33.70 -68.01 -2.29 -2.84 16 22 C -0.07 -0.75 9.44 -39.56 -0.37 -1.13 16 23 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 24 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 28 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.34 4.60 6.76 -39.29 -0.27 4.33 16 35 H 0.04 0.42 8.09 -51.93 -0.42 0.00 16 36 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 37 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 343.72 15.07 5.18 5.18 Total: -1.00 -29.08 343.72 -10.62 -39.70 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.19 Total: 0.08 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -2.37 Total: -22.50 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.08 Total: -36.16 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.29 Total: -2.84 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.08 -10.62 -39.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135167216.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.233 kcal (2) G-P(sol) polarization free energy of solvation -29.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds