Wall clock time and date at job start Tue Mar 31 2020 14:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46867 * 2 1 4 4 C 1.52998 * 109.46894 * 240.00299 * 2 1 3 5 5 C 1.50705 * 109.47232 * 59.99611 * 4 2 1 6 6 H 1.07995 * 119.99669 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99924 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00046 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99855 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47352 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47140 * 120.00379 * 9 7 5 12 12 H 1.48502 * 109.47222 * 240.00135 * 9 7 5 13 13 C 1.52991 * 109.47586 * 120.00313 * 2 1 3 14 14 N 1.46905 * 109.46991 * 299.99849 * 13 2 1 15 15 C 1.46901 * 110.99872 * 179.97438 * 14 13 2 16 16 C 1.50707 * 109.46944 * 180.02562 * 15 14 13 17 17 C 1.38259 * 119.99416 * 270.27876 * 16 15 14 18 18 C 1.38220 * 120.02067 * 180.23549 * 17 16 15 19 19 C 1.38238 * 120.00764 * 359.48336 * 18 17 16 20 20 C 1.38305 * 119.99297 * 0.26296 * 19 18 17 21 21 Br 1.89094 * 120.01387 * 179.97438 * 20 19 18 22 22 C 1.38191 * 119.99507 * 90.00188 * 16 15 14 23 23 H 1.09003 * 109.47133 * 299.99441 * 1 2 3 24 24 H 1.08991 * 109.47319 * 59.99697 * 1 2 3 25 25 H 1.09001 * 109.47154 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47018 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.46968 * 299.99892 * 3 2 1 28 28 H 1.08994 * 109.47007 * 60.00490 * 3 2 1 29 29 H 1.09000 * 109.47210 * 179.97438 * 4 2 1 30 30 H 1.09000 * 109.47336 * 299.99578 * 4 2 1 31 31 H 0.97007 * 119.99756 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47845 * 180.02562 * 13 2 1 33 33 H 1.09001 * 109.47275 * 59.99583 * 13 2 1 34 34 H 1.00895 * 111.00156 * 303.95272 * 14 13 2 35 35 H 1.09001 * 109.47462 * 60.00293 * 15 14 13 36 36 H 1.08996 * 109.47228 * 299.99980 * 15 14 13 37 37 H 1.07997 * 119.99226 * 359.97215 * 17 16 15 38 38 H 1.08002 * 119.99998 * 179.76945 * 18 17 16 39 39 H 1.08007 * 120.00835 * 180.23480 * 19 18 17 40 40 H 1.08002 * 120.00579 * 0.04011 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5375 -0.0108 -2.4797 6 1 0.9169 0.8675 -2.3805 7 6 1.8710 -0.4815 -3.7320 8 7 2.6271 -1.5508 -3.8527 9 14 1.2488 0.3995 -5.2571 10 1 0.4242 1.5664 -4.8530 11 1 2.4040 0.8663 -6.0650 12 1 0.4240 -0.5336 -6.0660 13 6 2.0401 -0.7213 1.2491 14 7 1.5505 -0.0288 2.4486 15 6 2.0211 -0.6953 3.6702 16 6 1.4995 0.0413 4.8771 17 6 2.2353 1.0743 5.4277 18 6 1.7598 1.7470 6.5375 19 6 0.5432 1.3943 7.0911 20 6 -0.1957 0.3645 6.5375 21 35 -1.8596 -0.1190 7.2947 22 6 0.2833 -0.3121 5.4298 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1299 -0.7208 -1.2496 30 1 1.6767 -1.7489 -1.2493 31 1 2.8614 -1.8821 -4.7338 32 1 3.1301 -0.7209 1.2494 33 1 1.6767 -1.7489 1.2491 34 1 1.8199 0.9435 2.4401 35 1 3.1110 -0.6955 3.6872 36 1 1.6573 -1.7226 3.6868 37 1 3.1839 1.3529 4.9931 38 1 2.3366 2.5514 6.9696 39 1 0.1698 1.9225 7.9560 40 1 -0.2932 -1.1165 4.9974 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135167216.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:05 Heat of formation + Delta-G solvation = -9.308104 kcal Electronic energy + Delta-G solvation = -19167.953268 eV Core-core repulsion = 16220.166199 eV Total energy + Delta-G solvation = -2947.787069 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.42191 -39.05650 -36.03838 -34.36118 -33.16804 -32.05257 -30.18482 -29.01199 -27.88521 -27.41646 -25.77546 -23.89396 -23.41324 -22.01497 -19.55751 -18.32637 -17.78583 -16.92611 -16.62727 -16.25113 -15.85078 -15.66920 -15.28174 -14.70050 -14.41990 -14.39649 -14.14213 -13.86370 -13.83101 -13.34250 -13.26847 -12.80593 -12.67287 -12.43569 -12.26193 -12.15261 -12.12900 -12.03046 -11.85324 -11.77434 -11.37119 -11.24244 -10.85626 -10.73795 -10.50373 -9.87116 -9.66629 -9.26531 -8.13634 -6.20214 0.13827 0.32585 0.66889 1.40178 1.41582 1.53483 2.44052 2.61216 3.20547 3.41983 3.75232 3.92857 4.12368 4.14157 4.22681 4.32248 4.34895 4.39741 4.51879 4.66457 4.80167 4.80878 4.87580 4.97202 4.99426 5.09004 5.22014 5.22979 5.24987 5.38345 5.53081 5.54702 5.55879 5.59632 5.66137 5.86321 5.88424 5.94006 6.06414 6.37937 6.51631 6.95271 7.47138 8.98872 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.025396 B = 0.002363 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.261295 B =11845.733121 C =12354.835890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.055 4.055 3 C -0.122 4.122 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.065 0.935 7 C -0.005 4.005 8 N -0.938 5.938 9 Si 0.955 3.045 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.083 3.917 14 N -0.679 5.679 15 C 0.097 3.903 16 C -0.079 4.079 17 C -0.101 4.101 18 C -0.111 4.111 19 C -0.098 4.098 20 C -0.103 4.103 21 Br -0.057 7.057 22 C -0.083 4.083 23 H 0.065 0.935 24 H 0.037 0.963 25 H 0.030 0.970 26 H 0.039 0.961 27 H 0.045 0.955 28 H 0.066 0.934 29 H -0.014 1.014 30 H -0.016 1.016 31 H 0.259 0.741 32 H 0.023 0.977 33 H 0.058 0.942 34 H 0.345 0.655 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.143 0.857 38 H 0.158 0.842 39 H 0.147 0.853 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.209 6.381 27.242 28.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.056 4.056 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.083 0.917 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.780 3.220 10 H -0.185 1.185 11 H -0.208 1.208 12 H -0.209 1.209 13 C -0.047 4.047 14 N -0.312 5.312 15 C -0.031 4.031 16 C -0.080 4.080 17 C -0.120 4.120 18 C -0.130 4.130 19 C -0.117 4.117 20 C -0.183 4.183 21 Br 0.028 6.972 22 C -0.103 4.103 23 H 0.084 0.916 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.004 0.996 30 H 0.002 0.998 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.165 0.835 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.160 0.840 38 H 0.176 0.824 39 H 0.164 0.836 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.370 5.765 27.402 28.512 hybrid contribution 1.125 0.119 -1.467 1.852 sum -4.245 5.884 25.935 26.931 Atomic orbital electron populations 1.21498 0.94507 1.00029 1.00368 1.20495 0.96141 0.95684 0.93256 1.21678 0.99569 0.95552 1.01091 1.19011 0.94056 0.94082 0.92637 1.21655 1.30047 1.11869 0.91482 0.91674 1.25905 0.95748 0.95924 1.02534 1.70115 1.38937 1.24950 1.23940 0.85542 0.78131 0.78820 0.79457 1.18506 1.20782 1.20925 1.21829 0.96103 0.97534 0.89184 1.60523 1.63715 1.06627 1.00322 1.20889 0.97643 0.97821 0.86761 1.19825 0.94523 0.97241 0.96447 1.21481 1.00354 0.94312 0.95877 1.21456 0.95463 1.00261 0.95777 1.21381 0.94727 0.95359 1.00277 1.21916 0.94441 1.01881 1.00016 1.96707 1.24942 1.92520 1.83035 1.21057 0.95643 0.99532 0.94084 0.91620 0.94397 0.95127 0.94198 0.93594 0.91534 0.99571 0.99754 0.93187 0.95894 0.92373 0.83520 0.93294 0.90430 0.83956 0.82394 0.83568 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.06 8.06 71.98 0.58 -3.48 16 2 C -0.06 -2.16 0.60 -52.18 -0.03 -2.19 16 3 C -0.12 -4.28 7.89 71.98 0.57 -3.71 16 4 C 0.04 2.04 4.04 29.85 0.12 2.16 16 5 C -0.51 -28.28 7.65 25.60 0.20 -28.08 16 6 H 0.07 3.46 5.68 -2.91 -0.02 3.45 16 7 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 8 N -0.94 -57.26 13.29 21.45 0.28 -56.98 16 9 Si 0.95 44.48 29.54 68.60 2.03 46.51 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 C 0.08 2.71 4.65 86.30 0.40 3.11 16 14 N -0.68 -17.73 5.70 -517.93 -2.95 -20.68 16 15 C 0.10 2.11 5.81 85.56 0.50 2.60 16 16 C -0.08 -1.55 5.39 -19.87 -0.11 -1.66 16 17 C -0.10 -1.61 9.70 22.27 0.22 -1.40 16 18 C -0.11 -1.51 10.05 22.27 0.22 -1.29 16 19 C -0.10 -1.52 9.79 22.29 0.22 -1.31 16 20 C -0.10 -1.98 6.22 22.31 0.14 -1.85 16 21 Br -0.06 -1.06 33.70 -20.37 -0.69 -1.75 16 22 C -0.08 -1.73 9.44 22.29 0.21 -1.52 16 23 H 0.06 2.19 7.60 -2.39 -0.02 2.17 16 24 H 0.04 1.54 6.62 -2.39 -0.02 1.53 16 25 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.04 1.78 6.62 -2.38 -0.02 1.77 16 28 H 0.07 1.89 6.57 -2.39 -0.02 1.88 16 29 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 30 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 31 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.34 8.40 6.76 -89.70 -0.61 7.79 16 35 H 0.05 0.97 8.09 -2.39 -0.02 0.95 16 36 H 0.08 1.73 8.08 -2.39 -0.02 1.71 16 37 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 38 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 39 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 40 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -63.09 343.72 2.78 -60.32 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.41 Total: 11.00 kcal Atomic # 6 Polarization: -42.11 SS G_CDS: 3.69 Total: -38.41 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -2.67 Total: -77.66 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 35 Polarization: -1.06 SS G_CDS: -0.69 Total: -1.75 kcal Total: -63.09 2.78 -60.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135167216.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.007 kcal (2) G-P(sol) polarization free energy of solvation -63.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds