Wall clock time and date at job start Tue Mar 31 2020 14:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46982 * 2 1 4 4 C 1.52995 * 109.46929 * 239.99918 * 2 1 3 5 5 C 1.50696 * 109.47577 * 60.00209 * 4 2 1 6 6 H 1.08002 * 119.99866 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00301 * 179.97438 * 5 4 2 8 8 N 1.31507 * 119.99998 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99915 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46817 * 60.00552 * 9 7 5 11 11 H 1.48501 * 109.47289 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47272 * 300.00419 * 9 7 5 13 13 C 1.53008 * 109.46814 * 120.00003 * 2 1 3 14 14 N 1.46897 * 109.47009 * 299.99570 * 13 2 1 15 15 C 1.46899 * 110.99989 * 179.97438 * 14 13 2 16 16 C 1.50698 * 109.47470 * 179.97438 * 15 14 13 17 17 C 1.38242 * 120.00070 * 104.99822 * 16 15 14 18 18 C 1.38224 * 120.00951 * 179.70212 * 17 16 15 19 19 C 1.38264 * 120.01600 * 0.28256 * 18 17 16 20 20 C 1.38198 * 120.01410 * 0.02562 * 19 18 17 21 21 C 1.38299 * 120.00769 * 285.26009 * 16 15 14 22 22 Br 1.89103 * 120.01247 * 0.04165 * 21 16 15 23 23 H 1.09004 * 109.47019 * 300.00077 * 1 2 3 24 24 H 1.08997 * 109.47281 * 59.99751 * 1 2 3 25 25 H 1.09000 * 109.47372 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46876 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47337 * 299.99714 * 3 2 1 28 28 H 1.09004 * 109.47306 * 60.00099 * 3 2 1 29 29 H 1.09004 * 109.46623 * 180.02562 * 4 2 1 30 30 H 1.08999 * 109.47356 * 299.99930 * 4 2 1 31 31 H 0.97006 * 120.00021 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46499 * 179.97438 * 13 2 1 33 33 H 1.08999 * 109.47285 * 60.00183 * 13 2 1 34 34 H 1.00906 * 110.99898 * 56.05643 * 14 13 2 35 35 H 1.09001 * 109.46772 * 60.00489 * 15 14 13 36 36 H 1.09000 * 109.47321 * 300.00899 * 15 14 13 37 37 H 1.08002 * 119.99955 * 359.97438 * 17 16 15 38 38 H 1.07991 * 119.99277 * 180.25949 * 18 17 16 39 39 H 1.08005 * 119.99203 * 179.97438 * 19 18 17 40 40 H 1.08001 * 120.00771 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8670 -2.3807 7 6 1.8712 -0.4817 -3.7319 8 7 2.6272 -1.5510 -3.8525 9 14 1.2480 0.3985 -5.2571 10 1 1.7421 1.7989 -5.2571 11 1 1.7430 -0.3015 -6.4697 12 1 -0.2370 0.3975 -5.2572 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0287 2.4487 15 6 2.0208 -0.6952 3.6704 16 6 1.5003 0.0422 4.8772 17 6 0.4598 -0.4892 5.6163 18 6 -0.0136 0.1840 6.7268 19 6 0.5493 1.3918 7.0955 20 6 1.5851 1.9269 6.3535 21 6 2.0597 1.2531 5.2423 22 35 3.4772 1.9847 4.2267 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 -0.7216 -1.2489 30 1 1.6766 -1.7489 -1.2492 31 1 2.8621 -1.8820 -4.7336 32 1 3.1300 -0.7217 1.2490 33 1 1.6766 -1.7490 1.2493 34 1 0.5437 0.0413 2.4402 35 1 3.1106 -0.6954 3.6874 36 1 1.6570 -1.7226 3.6869 37 1 0.0198 -1.4326 5.3285 38 1 -0.8236 -0.2334 7.3064 39 1 0.1787 1.9177 7.9631 40 1 2.0250 2.8702 6.6419 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135167487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:08 Heat of formation + Delta-G solvation = 9.438380 kcal Electronic energy + Delta-G solvation = -19522.113287 eV Core-core repulsion = 16575.139127 eV Total energy + Delta-G solvation = -2946.974160 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.60528 -37.53065 -34.67312 -32.48436 -32.19295 -30.98570 -29.23551 -27.04594 -26.28101 -26.06008 -24.21631 -22.63987 -22.16296 -21.21488 -17.93550 -16.84302 -16.20803 -15.97474 -15.38218 -14.88589 -14.67233 -14.27294 -13.89937 -13.63968 -13.20975 -13.06511 -12.86699 -12.42611 -12.14170 -11.95470 -11.73993 -11.37523 -11.21365 -10.92458 -10.83919 -10.80830 -10.74805 -10.43894 -10.21600 -10.09867 -9.96120 -9.62853 -9.15150 -8.96188 -8.81056 -8.71155 -8.28310 -8.02232 -5.93082 -3.92957 0.94628 1.07041 1.73018 3.36883 3.40919 3.41330 3.43861 4.42341 4.52305 4.60387 4.68214 4.84882 5.04448 5.18458 5.37631 5.42743 5.46918 5.62183 5.73624 5.81718 5.84048 6.01830 6.04288 6.17216 6.23297 6.29523 6.39845 6.56658 6.60674 6.74196 6.84652 6.89249 7.25980 7.26368 7.32721 7.43123 7.69736 7.74942 7.90144 8.07543 8.52274 9.12312 9.69617 11.18607 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.023536 B = 0.003267 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.390101 B = 8568.284659 C = 9140.716900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.056 4.056 3 C -0.114 4.114 4 C 0.035 3.965 5 C -0.506 4.506 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.072 3.928 14 N -0.672 5.672 15 C 0.089 3.911 16 C -0.053 4.053 17 C -0.111 4.111 18 C -0.110 4.110 19 C -0.119 4.119 20 C -0.097 4.097 21 C -0.068 4.068 22 Br -0.032 7.032 23 H 0.033 0.967 24 H 0.063 0.937 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.015 0.985 30 H 0.012 0.988 31 H 0.259 0.741 32 H 0.067 0.933 33 H 0.022 0.978 34 H 0.338 0.662 35 H 0.086 0.914 36 H 0.037 0.963 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.159 4.849 24.065 24.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.057 4.057 3 C -0.172 4.172 4 C -0.003 4.003 5 C -0.545 4.545 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.056 4.056 14 N -0.304 5.304 15 C -0.040 4.040 16 C -0.056 4.056 17 C -0.130 4.130 18 C -0.128 4.128 19 C -0.138 4.138 20 C -0.117 4.117 21 C -0.148 4.148 22 Br 0.054 6.946 23 H 0.052 0.948 24 H 0.082 0.918 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.157 0.843 35 H 0.104 0.896 36 H 0.055 0.945 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.015 5.466 23.523 24.171 hybrid contribution -1.199 -0.616 -0.684 1.512 sum -2.214 4.849 22.839 23.453 Atomic orbital electron populations 1.21766 0.96185 1.00248 1.00382 1.20608 0.94614 0.96194 0.94274 1.21580 0.99718 0.95733 1.00144 1.19111 0.96090 0.94910 0.90182 1.21207 1.30733 1.11879 0.90635 0.92362 1.25007 0.95434 0.95118 0.99014 1.69955 1.37308 1.23223 1.23346 0.86737 0.79139 0.79855 0.82733 1.20309 1.21472 1.20377 1.22108 0.99900 0.94501 0.89086 1.60584 1.16224 1.53334 1.00248 1.20985 1.01108 0.94277 0.87644 1.19860 0.95393 0.93766 0.96557 1.21121 0.96144 1.00355 0.95421 1.21223 0.99621 0.95187 0.96768 1.21133 0.96498 0.96213 0.99981 1.21141 0.96879 0.99782 0.93918 1.21782 0.98595 0.97027 0.97400 1.96769 1.42631 1.83473 1.71748 0.94830 0.91789 0.94196 0.94269 0.92919 0.93680 0.96711 0.97002 0.93146 0.91448 0.95944 0.84295 0.89554 0.94474 0.85442 0.85637 0.85473 0.85224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 7.89 37.16 0.29 -2.11 16 2 C -0.06 -1.13 0.60 -154.51 -0.09 -1.22 16 3 C -0.11 -2.26 8.06 37.16 0.30 -1.96 16 4 C 0.03 0.87 4.04 -27.89 -0.11 0.76 16 5 C -0.51 -13.95 7.65 -34.44 -0.26 -14.21 16 6 H 0.06 1.56 5.68 -52.49 -0.30 1.27 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.07 1.24 4.65 -3.82 -0.02 1.22 16 14 N -0.67 -9.68 5.43 -115.06 -0.63 -10.31 16 15 C 0.09 1.11 5.08 -4.98 -0.03 1.09 16 16 C -0.05 -0.62 5.39 -104.60 -0.56 -1.18 16 17 C -0.11 -1.08 9.67 -39.59 -0.38 -1.46 16 18 C -0.11 -0.92 10.05 -39.58 -0.40 -1.32 16 19 C -0.12 -1.00 10.05 -39.59 -0.40 -1.40 16 20 C -0.10 -0.96 9.79 -39.55 -0.39 -1.35 16 21 C -0.07 -0.80 6.22 -39.52 -0.25 -1.04 16 22 Br -0.03 -0.41 31.92 -68.01 -2.17 -2.58 16 23 H 0.03 0.54 6.57 -51.93 -0.34 0.19 16 24 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.05 1.11 6.62 -51.93 -0.34 0.77 16 28 H 0.04 0.81 7.60 -51.93 -0.39 0.42 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.34 4.79 6.76 -39.29 -0.27 4.52 16 35 H 0.09 1.13 7.42 -51.93 -0.39 0.75 16 36 H 0.04 0.44 7.95 -51.93 -0.41 0.02 16 37 H 0.13 1.05 8.00 -52.49 -0.42 0.63 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 340.65 15.07 5.13 5.13 Total: -1.00 -29.60 340.65 -10.48 -40.08 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.15 Total: -0.05 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -2.39 Total: -22.72 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.11 Total: -36.63 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 35 Polarization: -0.41 SS G_CDS: -2.17 Total: -2.58 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.60 -10.48 -40.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135167487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.521 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds