Wall clock time and date at job start Tue Mar 31 2020 14:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46982 * 2 1 4 4 C 1.52995 * 109.46929 * 239.99918 * 2 1 3 5 5 C 1.50696 * 109.47577 * 60.00209 * 4 2 1 6 6 H 1.08002 * 119.99866 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00301 * 179.97438 * 5 4 2 8 8 N 1.31507 * 119.99998 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99915 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46817 * 60.00552 * 9 7 5 11 11 H 1.48501 * 109.47289 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47272 * 300.00419 * 9 7 5 13 13 C 1.53008 * 109.46814 * 120.00003 * 2 1 3 14 14 N 1.46897 * 109.47009 * 299.99570 * 13 2 1 15 15 C 1.46899 * 110.99989 * 179.97438 * 14 13 2 16 16 C 1.50698 * 109.47470 * 179.97438 * 15 14 13 17 17 C 1.38242 * 120.00070 * 104.99822 * 16 15 14 18 18 C 1.38224 * 120.00951 * 179.70212 * 17 16 15 19 19 C 1.38264 * 120.01600 * 0.28256 * 18 17 16 20 20 C 1.38198 * 120.01410 * 0.02562 * 19 18 17 21 21 C 1.38299 * 120.00769 * 285.26009 * 16 15 14 22 22 Br 1.89103 * 120.01247 * 0.04165 * 21 16 15 23 23 H 1.09004 * 109.47019 * 300.00077 * 1 2 3 24 24 H 1.08997 * 109.47281 * 59.99751 * 1 2 3 25 25 H 1.09000 * 109.47372 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46876 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47337 * 299.99714 * 3 2 1 28 28 H 1.09004 * 109.47306 * 60.00099 * 3 2 1 29 29 H 1.09004 * 109.46623 * 180.02562 * 4 2 1 30 30 H 1.08999 * 109.47356 * 299.99930 * 4 2 1 31 31 H 0.97006 * 120.00021 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46499 * 179.97438 * 13 2 1 33 33 H 1.08999 * 109.47285 * 60.00183 * 13 2 1 34 34 H 1.00906 * 110.99898 * 56.05643 * 14 13 2 35 35 H 1.09001 * 109.46772 * 60.00489 * 15 14 13 36 36 H 1.09000 * 109.47321 * 300.00899 * 15 14 13 37 37 H 1.08002 * 119.99955 * 359.97438 * 17 16 15 38 38 H 1.07991 * 119.99277 * 180.25949 * 18 17 16 39 39 H 1.08005 * 119.99203 * 179.97438 * 19 18 17 40 40 H 1.08001 * 120.00771 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8670 -2.3807 7 6 1.8712 -0.4817 -3.7319 8 7 2.6272 -1.5510 -3.8525 9 14 1.2480 0.3985 -5.2571 10 1 1.7421 1.7989 -5.2571 11 1 1.7430 -0.3015 -6.4697 12 1 -0.2370 0.3975 -5.2572 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0287 2.4487 15 6 2.0208 -0.6952 3.6704 16 6 1.5003 0.0422 4.8772 17 6 0.4598 -0.4892 5.6163 18 6 -0.0136 0.1840 6.7268 19 6 0.5493 1.3918 7.0955 20 6 1.5851 1.9269 6.3535 21 6 2.0597 1.2531 5.2423 22 35 3.4772 1.9847 4.2267 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 -0.7216 -1.2489 30 1 1.6766 -1.7489 -1.2492 31 1 2.8621 -1.8820 -4.7336 32 1 3.1300 -0.7217 1.2490 33 1 1.6766 -1.7490 1.2493 34 1 0.5437 0.0413 2.4402 35 1 3.1106 -0.6954 3.6874 36 1 1.6570 -1.7226 3.6869 37 1 0.0198 -1.4326 5.3285 38 1 -0.8236 -0.2334 7.3064 39 1 0.1787 1.9177 7.9631 40 1 2.0250 2.8702 6.6419 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135167487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:07 Heat of formation + Delta-G solvation = -6.068382 kcal Electronic energy + Delta-G solvation = -19522.785711 eV Core-core repulsion = 16575.139127 eV Total energy + Delta-G solvation = -2947.646584 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.39131 -39.02813 -35.99949 -34.33651 -33.10191 -32.02466 -30.07236 -28.98243 -27.86899 -27.33672 -25.72336 -23.86973 -23.36218 -22.04832 -19.54896 -18.31526 -17.64825 -16.94311 -16.61799 -16.22146 -15.79253 -15.70323 -15.26937 -14.63377 -14.44270 -14.32837 -14.12696 -13.84616 -13.68713 -13.31720 -13.21057 -12.74890 -12.71181 -12.42020 -12.23739 -12.15992 -12.12773 -11.97219 -11.88051 -11.66812 -11.35081 -10.90818 -10.83024 -10.72770 -10.48933 -9.84196 -9.54828 -9.20742 -8.12954 -6.19808 0.20385 0.34941 0.88913 1.40946 1.43284 1.50504 2.44364 2.67825 3.20865 3.40414 3.79397 3.88517 4.15142 4.17722 4.25306 4.36324 4.41702 4.47033 4.59200 4.65578 4.79232 4.83862 4.85445 4.99421 5.03801 5.10775 5.23466 5.24386 5.33738 5.46287 5.51568 5.53470 5.56184 5.60281 5.68022 5.89652 5.92765 5.94414 6.08950 6.38607 6.54665 6.95200 7.47349 8.99235 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.023536 B = 0.003267 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.390101 B = 8568.284659 C = 9140.716900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.052 4.052 3 C -0.103 4.103 4 C 0.041 3.959 5 C -0.514 4.514 6 H 0.065 0.935 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.955 3.045 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.267 1.267 13 C 0.087 3.913 14 N -0.668 5.668 15 C 0.093 3.907 16 C -0.071 4.071 17 C -0.115 4.115 18 C -0.106 4.106 19 C -0.114 4.114 20 C -0.106 4.106 21 C -0.084 4.084 22 Br -0.055 7.055 23 H 0.065 0.935 24 H 0.045 0.955 25 H 0.038 0.962 26 H 0.026 0.974 27 H 0.035 0.965 28 H 0.066 0.934 29 H -0.018 1.018 30 H -0.015 1.015 31 H 0.259 0.741 32 H 0.054 0.946 33 H 0.020 0.980 34 H 0.343 0.657 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.142 0.858 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.176 5.805 25.922 26.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.053 4.053 3 C -0.160 4.160 4 C 0.004 3.996 5 C -0.553 4.553 6 H 0.083 0.917 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.192 1.192 13 C -0.042 4.042 14 N -0.300 5.300 15 C -0.036 4.036 16 C -0.073 4.073 17 C -0.134 4.134 18 C -0.124 4.124 19 C -0.133 4.133 20 C -0.126 4.126 21 C -0.165 4.165 22 Br 0.031 6.969 23 H 0.084 0.916 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.001 0.999 30 H 0.003 0.997 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.162 0.838 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.159 0.841 38 H 0.172 0.828 39 H 0.174 0.826 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.044 6.433 25.402 26.380 hybrid contribution -0.589 -0.935 -1.140 1.588 sum -3.633 5.498 24.261 25.141 Atomic orbital electron populations 1.21666 0.94670 1.00406 1.01032 1.20462 0.95753 0.95920 0.93142 1.21459 0.98876 0.95426 1.00257 1.18987 0.93955 0.93995 0.92671 1.21595 1.30245 1.11907 0.91506 0.91696 1.25906 0.95722 0.95897 1.02528 1.70101 1.38846 1.24945 1.24059 0.85651 0.78996 0.78754 0.78568 1.19454 1.21337 1.19193 1.21774 0.99039 0.94184 0.89227 1.60477 1.16440 1.53188 0.99908 1.20925 1.00552 0.94858 0.87234 1.19792 0.96690 0.94066 0.96736 1.21348 0.95476 1.00974 0.95609 1.21599 0.99804 0.94859 0.96167 1.21517 0.95362 0.96162 1.00232 1.21371 0.97411 1.00252 0.93545 1.21884 0.98691 0.97626 0.98252 1.96742 1.43923 1.83777 1.72428 0.91609 0.93596 0.94299 0.95457 0.94549 0.91558 0.99936 0.99689 0.93181 0.92724 0.96167 0.83767 0.90650 0.93502 0.84063 0.82760 0.82583 0.84228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.37 7.89 71.98 0.57 -3.81 16 2 C -0.05 -2.10 0.60 -52.18 -0.03 -2.14 16 3 C -0.10 -4.05 8.06 71.98 0.58 -3.47 16 4 C 0.04 2.18 4.04 29.85 0.12 2.30 16 5 C -0.51 -28.83 7.65 25.60 0.20 -28.64 16 6 H 0.06 3.49 5.68 -2.91 -0.02 3.48 16 7 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 8 N -0.94 -57.98 13.29 21.44 0.28 -57.69 16 9 Si 0.95 44.94 29.54 68.60 2.03 46.97 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 C 0.09 2.99 4.65 86.31 0.40 3.39 16 14 N -0.67 -18.52 5.43 -517.93 -2.81 -21.33 16 15 C 0.09 2.24 5.08 85.56 0.43 2.67 16 16 C -0.07 -1.51 5.39 -19.85 -0.11 -1.62 16 17 C -0.11 -1.91 9.67 22.27 0.22 -1.70 16 18 C -0.11 -1.39 10.05 22.27 0.22 -1.16 16 19 C -0.11 -1.51 10.05 22.27 0.22 -1.29 16 20 C -0.11 -1.86 9.79 22.29 0.22 -1.64 16 21 C -0.08 -1.87 6.22 22.31 0.14 -1.73 16 22 Br -0.05 -1.37 31.92 -20.37 -0.65 -2.02 16 23 H 0.07 1.96 6.57 -2.38 -0.02 1.94 16 24 H 0.04 1.82 6.62 -2.39 -0.02 1.81 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.04 1.52 6.62 -2.39 -0.02 1.51 16 28 H 0.07 2.31 7.60 -2.38 -0.02 2.30 16 29 H -0.02 -1.04 8.14 -2.39 -0.02 -1.05 16 30 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 31 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.34 8.98 6.76 -89.69 -0.61 8.37 16 35 H 0.08 1.97 7.42 -2.39 -0.02 1.96 16 36 H 0.05 1.04 7.95 -2.39 -0.02 1.02 16 37 H 0.14 1.90 8.00 -2.91 -0.02 1.87 16 38 H 0.15 1.12 8.06 -2.92 -0.02 1.10 16 39 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 40 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -64.98 340.65 2.91 -62.07 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.41 Total: 10.59 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 3.64 Total: -38.59 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -2.53 Total: -79.03 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 35 Polarization: -1.37 SS G_CDS: -0.65 Total: -2.02 kcal Total: -64.98 2.91 -62.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135167487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.003 kcal (2) G-P(sol) polarization free energy of solvation -64.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds