Wall clock time and date at job start Tue Mar 31 2020 13:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31292 * 1 3 3 Si 1.86799 * 119.99689 * 2 1 4 4 H 1.48508 * 109.47153 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47501 * 300.00620 * 3 2 1 6 6 H 1.48501 * 109.47062 * 60.00702 * 3 2 1 7 7 C 1.38979 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00012 * 179.97438 * 7 2 1 9 9 N 1.37323 * 120.00568 * 359.97438 * 7 2 1 10 10 C 1.36490 * 126.07494 * 180.02562 * 9 7 2 11 11 C 1.35674 * 107.50799 * 180.02562 * 10 9 7 12 12 N 1.40596 * 126.08175 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00472 * 179.97438 * 12 11 10 14 14 O 1.21306 * 119.99569 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00244 * 180.02562 * 13 12 11 16 16 F 1.39897 * 109.47110 * 85.00368 * 15 13 12 17 17 F 1.39895 * 109.47254 * 324.99903 * 15 13 12 18 18 C 1.50706 * 109.46817 * 205.00107 * 15 13 12 19 19 C 1.38241 * 119.97263 * 269.72457 * 18 15 13 20 20 C 1.38204 * 120.02246 * 179.73094 * 19 18 15 21 21 C 1.38459 * 119.97363 * 0.56695 * 20 19 18 22 22 F 1.35093 * 120.02653 * 179.68354 * 21 20 19 23 23 C 1.38456 * 119.94907 * 359.70518 * 21 20 19 24 24 C 1.38204 * 119.97569 * 0.02562 * 23 21 20 25 25 C 1.40652 * 107.83903 * 0.26405 * 11 10 9 26 26 N 1.30906 * 108.38009 * 359.55319 * 25 11 10 27 27 H 0.97005 * 120.00263 * 359.97438 * 1 2 3 28 28 H 1.08001 * 126.24178 * 0.04268 * 10 9 7 29 29 H 0.97001 * 119.99776 * 0.02562 * 12 11 10 30 30 H 1.07994 * 119.98892 * 359.97438 * 19 18 15 31 31 H 1.08002 * 120.01255 * 180.25727 * 20 19 18 32 32 H 1.08001 * 120.01665 * 179.97438 * 23 21 20 33 33 H 1.08001 * 119.98560 * 179.97438 * 24 23 21 34 34 H 1.08001 * 125.80438 * 179.70466 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 3.7069 1.3465 -0.0006 5 1 1.8880 2.3966 -1.2124 6 1 1.8882 2.3964 1.2126 7 6 2.0078 -1.2036 -0.0005 8 1 3.0878 -1.2036 -0.0010 9 7 1.3213 -2.3929 -0.0005 10 6 1.8750 -3.6405 -0.0005 11 6 0.8579 -4.5384 -0.0011 12 7 0.9892 -5.9382 -0.0018 13 6 -0.1099 -6.7182 -0.0018 14 8 -1.2125 -6.2124 -0.0017 15 6 0.0308 -8.2186 -0.0020 16 9 0.1888 -8.6723 1.3119 17 9 1.1500 -8.5819 -0.7587 18 6 -1.2044 -8.8389 -0.6025 19 6 -2.2721 -9.1758 0.2085 20 6 -3.4076 -9.7396 -0.3419 21 6 -3.4709 -9.9777 -1.7044 22 9 -4.5778 -10.5347 -2.2425 23 6 -2.3987 -9.6451 -2.5148 24 6 -1.2665 -9.0763 -1.9630 25 6 -0.3512 -3.8198 -0.0077 26 7 -0.0715 -2.5410 -0.0012 27 1 -0.4851 0.8401 0.0004 28 1 2.9302 -3.8707 0.0001 29 1 1.8708 -6.3426 -0.0016 30 1 -2.2204 -8.9948 1.2719 31 1 -4.2432 -9.9989 0.2913 32 1 -2.4468 -9.8307 -3.5776 33 1 -0.4299 -8.8171 -2.5950 34 1 -1.3418 -4.2501 -0.0142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139261067.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:52 Heat of formation + Delta-G solvation = -74.956148 kcal Electronic energy + Delta-G solvation = -26394.685594 eV Core-core repulsion = 21879.682170 eV Total energy + Delta-G solvation = -4515.003424 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.48274 -50.02565 -48.46775 -41.82246 -40.58681 -39.79486 -36.15563 -35.08003 -32.93303 -32.28154 -32.27993 -30.06820 -28.10543 -26.64363 -24.22240 -23.86096 -22.91795 -22.03745 -21.38840 -19.88048 -19.24818 -19.05799 -18.90066 -18.37893 -17.46290 -17.13629 -16.87159 -16.69037 -16.46892 -16.06100 -15.84406 -15.60400 -15.27468 -15.01852 -14.92689 -14.87829 -14.60688 -14.47252 -14.41469 -14.27403 -13.54290 -13.42285 -13.37725 -12.96124 -12.93627 -12.81185 -12.15882 -12.03575 -12.02696 -11.10604 -11.06486 -10.86163 -10.21951 -10.15605 -9.94608 -8.66880 -8.49468 -6.27975 -0.23291 0.12624 0.81681 1.33868 1.37964 1.45825 1.60253 1.78448 2.11358 2.26303 2.36661 2.53821 2.58926 2.94405 3.07105 3.12765 3.29283 3.48658 3.73988 3.82419 4.13472 4.29454 4.38450 4.50032 4.66735 4.80848 4.93864 4.97144 4.97243 5.01602 5.16031 5.17950 5.27667 5.69172 5.91102 6.18776 6.37155 6.66520 6.94079 7.40492 7.61293 8.49802 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.024027 B = 0.002740 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.084126 B =10216.607850 C =10826.946094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C -0.006 4.006 3 Si 1.019 2.981 4 H -0.240 1.240 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.351 4.351 8 H 0.143 0.857 9 N -0.164 5.164 10 C -0.072 4.072 11 C -0.055 4.055 12 N -0.592 5.592 13 C 0.468 3.532 14 O -0.522 6.522 15 C 0.357 3.643 16 F -0.173 7.173 17 F -0.172 7.172 18 C -0.170 4.170 19 C -0.049 4.049 20 C -0.154 4.154 21 C 0.110 3.890 22 F -0.138 7.138 23 C -0.153 4.153 24 C -0.057 4.057 25 C -0.050 4.050 26 N -0.308 5.308 27 H 0.277 0.723 28 H 0.191 0.809 29 H 0.423 0.577 30 H 0.148 0.852 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.156 0.844 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.322 -18.358 -2.241 18.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.218 4.218 3 Si 0.838 3.162 4 H -0.163 1.163 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.483 4.483 8 H 0.161 0.839 9 N 0.068 4.932 10 C -0.223 4.223 11 C -0.161 4.161 12 N -0.236 5.236 13 C 0.250 3.750 14 O -0.398 6.398 15 C 0.317 3.683 16 F -0.153 7.153 17 F -0.153 7.153 18 C -0.171 4.171 19 C -0.067 4.067 20 C -0.172 4.172 21 C 0.090 3.910 22 F -0.116 7.116 23 C -0.171 4.171 24 C -0.075 4.075 25 C -0.226 4.226 26 N -0.140 5.140 27 H 0.087 0.913 28 H 0.208 0.792 29 H 0.261 0.739 30 H 0.166 0.834 31 H 0.182 0.818 32 H 0.184 0.816 33 H 0.173 0.827 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.121 -16.725 -2.239 16.875 hybrid contribution 0.677 -0.451 0.089 0.818 sum 0.555 -17.176 -2.150 17.319 Atomic orbital electron populations 1.70389 1.08415 1.29177 1.36947 1.26878 0.96478 1.04343 0.94055 0.84529 0.79099 0.74371 0.78180 1.16285 1.19805 1.19830 1.20702 0.93057 0.80723 1.53770 0.83932 1.44886 1.03677 1.04848 1.39800 1.22006 0.98900 0.84053 1.17307 1.17252 0.93310 0.82485 1.23073 1.42335 1.09449 1.03209 1.68652 1.20830 0.85300 0.88477 0.80436 1.90683 1.26458 1.73510 1.49159 1.19212 0.84165 0.89347 0.75602 1.93090 1.96019 1.89854 1.36370 1.93072 1.53904 1.92755 1.75563 1.19892 0.95336 1.05705 0.96199 1.20925 0.90972 0.93768 1.01052 1.21328 1.00059 1.02123 0.93711 1.18009 0.83779 0.96770 0.92408 1.91514 1.50977 1.82624 1.86518 1.21337 0.92144 1.01622 1.02027 1.20994 0.98731 0.94780 0.92999 1.24175 0.98870 0.90913 1.08617 1.78188 0.91980 1.16386 1.27441 0.91295 0.79195 0.73919 0.83399 0.81795 0.81586 0.82684 0.81237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.39 11.81 21.66 0.26 -46.13 16 2 C -0.01 -0.28 5.50 84.95 0.47 0.19 16 3 Si 1.02 37.55 29.55 68.60 2.03 39.58 16 4 H -0.24 -7.88 7.11 99.48 0.71 -7.18 16 5 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 6 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 7 C -0.35 -18.05 10.25 84.01 0.86 -17.19 16 8 H 0.14 6.31 7.83 -2.91 -0.02 6.29 16 9 N -0.16 -8.85 3.74 -190.02 -0.71 -9.56 16 10 C -0.07 -3.20 11.49 83.37 0.96 -2.25 16 11 C -0.06 -2.45 6.90 37.73 0.26 -2.19 16 12 N -0.59 -20.07 5.40 -303.93 -1.64 -21.71 16 13 C 0.47 15.74 7.19 87.66 0.63 16.37 16 14 O -0.52 -21.26 13.39 -3.11 -0.04 -21.30 16 15 C 0.36 9.21 2.22 29.10 0.06 9.27 16 16 F -0.17 -4.37 16.18 44.97 0.73 -3.64 16 17 F -0.17 -3.87 15.65 44.97 0.70 -3.16 16 18 C -0.17 -4.08 4.38 -19.86 -0.09 -4.17 16 19 C -0.05 -1.08 9.37 22.26 0.21 -0.87 16 20 C -0.15 -2.97 10.03 22.31 0.22 -2.74 16 21 C 0.11 2.20 7.30 22.37 0.16 2.36 16 22 F -0.14 -2.82 17.27 44.97 0.78 -2.04 16 23 C -0.15 -2.83 10.03 22.31 0.22 -2.61 16 24 C -0.06 -1.18 9.40 22.26 0.21 -0.97 16 25 C -0.05 -2.65 10.85 85.42 0.93 -1.72 16 26 N -0.31 -18.10 10.40 -56.46 -0.59 -18.69 16 27 H 0.28 14.36 8.31 -92.70 -0.77 13.59 16 28 H 0.19 6.58 8.06 -2.91 -0.02 6.56 16 29 H 0.42 10.94 8.38 -92.71 -0.78 10.16 16 30 H 0.15 2.98 7.59 -2.91 -0.02 2.96 16 31 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.16 2.69 7.60 -2.91 -0.02 2.67 16 34 H 0.17 8.90 5.92 -2.91 -0.02 8.88 16 Total: -1.00 -70.26 319.42 7.04 -63.22 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 0.42 Total: 29.96 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 5.11 Total: -6.53 kcal Atomic # 7 Polarization: -93.40 SS G_CDS: -2.68 Total: -96.09 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.04 Total: -21.30 kcal Atomic # 9 Polarization: -11.06 SS G_CDS: 2.21 Total: -8.85 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Total: -70.26 7.04 -63.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139261067.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.736 kcal (2) G-P(sol) polarization free energy of solvation -70.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds