Wall clock time and date at job start Tue Mar 31 2020 13:48:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31299 * 1
3 3 Si 1.86799 * 120.00261 * 2 1
4 4 H 1.48498 * 109.47167 * 270.00744 * 3 2 1
5 5 H 1.48501 * 109.46547 * 30.00274 * 3 2 1
6 6 H 1.48503 * 109.47120 * 149.99970 * 3 2 1
7 7 C 1.38993 * 119.99723 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99475 * 179.97438 * 7 2 1
9 9 N 1.37317 * 119.99918 * 359.97438 * 7 2 1
10 10 C 1.36499 * 126.06293 * 180.02562 * 9 7 2
11 11 C 1.35701 * 107.50058 * 179.97438 * 10 9 7
12 12 N 1.40524 * 126.07931 * 180.26862 * 11 10 9
13 13 C 1.34782 * 120.00036 * 179.71106 * 12 11 10
14 14 O 1.21582 * 119.99348 * 359.97438 * 13 12 11
15 15 C 1.47813 * 120.00173 * 179.97438 * 13 12 11
16 16 C 1.39602 * 120.14824 * 359.72502 * 15 13 12
17 17 C 1.37939 * 119.85453 * 179.74377 * 16 15 13
18 18 C 1.38386 * 120.14132 * 0.55303 * 17 16 15
19 19 C 1.38338 * 120.29598 * 359.69703 * 18 17 16
20 20 C 1.37974 * 120.14880 * 0.02562 * 19 18 17
21 21 C 1.50692 * 120.07777 * 179.97438 * 20 19 18
22 22 F 1.39905 * 109.47102 * 0.02562 * 21 20 19
23 23 F 1.39902 * 109.47438 * 120.01919 * 21 20 19
24 24 F 1.39900 * 109.47246 * 240.02027 * 21 20 19
25 25 C 1.40665 * 107.83127 * 359.97438 * 11 10 9
26 26 N 1.30898 * 108.38597 * 0.02562 * 25 11 10
27 27 H 0.96996 * 119.99943 * 359.97438 * 1 2 3
28 28 H 1.07999 * 126.24773 * 359.97438 * 10 9 7
29 29 H 0.96997 * 120.00448 * 359.70316 * 12 11 10
30 30 H 1.07998 * 120.07288 * 359.97438 * 16 15 13
31 31 H 1.07997 * 119.92741 * 180.27158 * 17 16 15
32 32 H 1.07999 * 119.84869 * 179.71956 * 18 17 16
33 33 H 1.08003 * 119.92521 * 179.97438 * 19 18 17
34 34 H 1.08000 * 125.80473 * 180.02562 * 25 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3130 0.0000 0.0000
3 14 2.2471 1.6177 0.0000
4 1 2.4944 2.0465 -1.4000
5 1 1.4445 2.6525 0.7001
6 1 3.5446 1.4401 0.7001
7 6 2.0079 -1.2037 -0.0005
8 1 3.0879 -1.2037 -0.0010
9 7 1.3212 -2.3929 -0.0005
10 6 1.8750 -3.6405 -0.0005
11 6 0.8576 -4.5385 0.0000
12 7 0.9887 -5.9376 0.0056
13 6 -0.1105 -6.7175 0.0114
14 8 -1.2155 -6.2104 0.0123
15 6 0.0274 -8.1892 0.0166
16 6 1.2947 -8.7747 0.0098
17 6 1.4164 -10.1486 0.0201
18 6 0.2856 -10.9464 0.0256
19 6 -0.9732 -10.3727 0.0272
20 6 -1.1090 -8.9996 0.0227
21 6 -2.4810 -8.3764 0.0238
22 9 -3.4511 -9.3844 0.0303
23 9 -2.6300 -7.5787 1.1634
24 9 -2.6357 -7.5874 -1.1211
25 6 -0.3515 -3.8197 0.0010
26 7 -0.0715 -2.5410 0.0004
27 1 -0.4850 0.8400 0.0004
28 1 2.9301 -3.8709 -0.0009
29 1 1.8703 -6.3422 0.0051
30 1 2.1779 -8.1532 0.0002
31 1 2.3962 -10.6028 0.0192
32 1 0.3863 -12.0217 0.0291
33 1 -1.8517 -11.0009 0.0311
34 1 -1.3422 -4.2496 0.0020
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000139529608.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:48:36
Heat of formation + Delta-G solvation = -62.461012 kcal
Electronic energy + Delta-G solvation = -27066.224386 eV
Core-core repulsion = 22551.762792 eV
Total energy + Delta-G solvation = -4514.461595 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 325.078 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-49.76997 -47.36346 -47.06895 -40.39823 -39.44403 -38.03570 -34.43006 -33.28933
-32.15506 -31.57522 -30.21137 -27.84173 -26.09948 -24.97292 -23.86126 -22.19200
-21.18106 -20.52879 -19.45066 -18.59657 -18.03559 -18.00004 -17.61868 -16.93298
-15.65772 -15.55025 -15.36517 -15.08809 -14.90310 -14.66565 -14.15058 -14.03454
-13.89705 -13.57545 -13.56697 -13.28593 -13.26482 -13.14169 -12.92650 -12.78069
-12.76038 -11.91408 -11.68481 -11.50901 -11.36049 -11.27340 -10.96447 -10.54451
-10.22333 -9.55330 -9.35734 -9.34149 -9.18501 -8.82552 -8.07493 -6.73437
-6.57157 -4.24249 0.42917 0.77922 2.73954 2.84385 2.97590 3.04006
3.09671 3.40020 3.42120 3.76762 3.84187 3.92299 4.19231 4.43404
4.46076 4.56972 4.67090 4.75264 4.84276 5.00882 5.01897 5.09998
5.26105 5.43832 5.79077 5.85069 5.96397 6.21549 6.32937 6.43698
6.84774 6.93125 7.06350 7.20869 7.83585 8.08122 8.24144 8.56479
8.75845 9.35438 9.65049 10.38629
Molecular weight = 325.08amu
Principal moments of inertia in cm(-1)
A = 0.025022 B = 0.003122 C = 0.002825
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1118.742976 B = 8966.186448 C = 9910.415899
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.767 5.767
2 C 0.046 3.954
3 Si 0.935 3.065
4 H -0.270 1.270
5 H -0.276 1.276
6 H -0.264 1.264
7 C -0.323 4.323
8 H 0.117 0.883
9 N -0.141 5.141
10 C -0.083 4.083
11 C -0.063 4.063
12 N -0.608 5.608
13 C 0.525 3.475
14 O -0.513 6.513
15 C -0.069 4.069
16 C -0.095 4.095
17 C -0.095 4.095
18 C -0.107 4.107
19 C -0.082 4.082
20 C -0.134 4.134
21 C 0.516 3.484
22 F -0.191 7.191
23 F -0.161 7.161
24 F -0.161 7.161
25 C -0.026 4.026
26 N -0.260 5.260
27 H 0.275 0.725
28 H 0.146 0.854
29 H 0.396 0.604
30 H 0.138 0.862
31 H 0.137 0.863
32 H 0.137 0.863
33 H 0.143 0.857
34 H 0.178 0.822
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.674 -20.317 0.045 20.646
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.394 5.394
2 C -0.172 4.172
3 Si 0.759 3.241
4 H -0.196 1.196
5 H -0.201 1.201
6 H -0.188 1.188
7 C -0.455 4.455
8 H 0.134 0.866
9 N 0.092 4.908
10 C -0.234 4.234
11 C -0.169 4.169
12 N -0.250 5.250
13 C 0.310 3.690
14 O -0.390 6.390
15 C -0.072 4.072
16 C -0.114 4.114
17 C -0.113 4.113
18 C -0.125 4.125
19 C -0.100 4.100
20 C -0.137 4.137
21 C 0.461 3.539
22 F -0.172 7.172
23 F -0.142 7.142
24 F -0.142 7.142
25 C -0.201 4.201
26 N -0.091 5.091
27 H 0.086 0.914
28 H 0.163 0.837
29 H 0.230 0.770
30 H 0.156 0.844
31 H 0.155 0.845
32 H 0.155 0.845
33 H 0.160 0.840
34 H 0.195 0.805
Dipole moment (debyes) X Y Z Total
from point charges 2.160 -18.539 0.050 18.665
hybrid contribution 1.152 -0.341 -0.006 1.201
sum 3.312 -18.880 0.044 19.168
Atomic orbital electron populations
1.70218 1.06142 1.28075 1.34941 1.25658 0.95714 1.00310 0.95470
0.85817 0.79375 0.79913 0.78980 1.19569 1.20063 1.18798 1.19887
0.91679 0.80541 1.53410 0.86566 1.44572 1.04109 1.03300 1.38785
1.21232 0.96762 0.85360 1.20045 1.17226 0.94495 0.80756 1.24419
1.42287 1.07771 1.04757 1.70149 1.17930 0.85174 0.85471 0.80376
1.90779 1.24934 1.74055 1.49242 1.19926 0.93173 0.93862 1.00258
1.21384 0.96055 0.95570 0.98382 1.21330 0.99426 0.93291 0.97279
1.21316 0.91696 1.00620 0.98874 1.21030 0.99209 0.92643 0.97075
1.20135 0.92091 0.94814 1.06617 1.17886 0.84549 0.76066 0.75384
1.93122 1.66560 1.61085 1.96453 1.93255 1.96060 1.74433 1.50496
1.93255 1.96006 1.74908 1.50071 1.24162 0.98101 0.90666 1.07211
1.78278 0.90016 1.15063 1.25744 0.91388 0.83653 0.76988 0.84423
0.84519 0.84541 0.83957 0.80532
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.77 -21.51 11.81 55.50 0.66 -20.85 16
2 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16
3 Si 0.94 18.86 29.55 -169.99 -5.02 13.83 16
4 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16
5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16
6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16
7 C -0.32 -8.51 10.25 -14.81 -0.15 -8.66 16
8 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16
9 N -0.14 -3.85 3.74 -11.40 -0.04 -3.89 16
10 C -0.08 -1.93 11.49 -16.38 -0.19 -2.12 16
11 C -0.06 -1.46 6.90 -83.86 -0.58 -2.04 16
12 N -0.61 -10.78 5.41 -10.86 -0.06 -10.84 16
13 C 0.52 9.50 7.55 -12.34 -0.09 9.41 16
14 O -0.51 -11.15 8.45 5.29 0.04 -11.10 16
15 C -0.07 -0.94 5.85 -104.97 -0.61 -1.56 16
16 C -0.10 -0.92 9.54 -39.18 -0.37 -1.29 16
17 C -0.10 -0.69 10.03 -39.64 -0.40 -1.09 16
18 C -0.11 -0.77 10.04 -39.49 -0.40 -1.17 16
19 C -0.08 -0.78 9.42 -39.64 -0.37 -1.16 16
20 C -0.13 -1.79 5.40 -104.22 -0.56 -2.35 16
21 C 0.52 8.15 2.78 36.00 0.10 8.25 16
22 F -0.19 -2.61 15.98 2.25 0.04 -2.57 16
23 F -0.16 -2.94 15.01 2.25 0.03 -2.91 16
24 F -0.16 -2.94 15.01 2.25 0.03 -2.91 16
25 C -0.03 -0.69 10.85 -17.03 -0.18 -0.87 16
26 N -0.26 -7.62 10.39 30.80 0.32 -7.30 16
27 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16
28 H 0.15 2.78 8.06 -52.49 -0.42 2.35 16
29 H 0.40 5.24 6.86 -40.82 -0.28 4.96 16
30 H 0.14 1.01 6.41 -52.49 -0.34 0.68 16
31 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16
32 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16
33 H 0.14 1.11 7.15 -52.48 -0.38 0.73 16
34 H 0.18 4.72 5.92 -52.49 -0.31 4.40 16
LS Contribution 308.93 15.07 4.66 4.66
Total: -1.00 -34.39 308.93 -5.37 -39.76
By element:
Atomic # 1 Polarization: 9.79 SS G_CDS: -2.12 Total: 7.67 kcal
Atomic # 6 Polarization: 0.36 SS G_CDS: -3.91 Total: -3.55 kcal
Atomic # 7 Polarization: -43.76 SS G_CDS: 0.87 Total: -42.88 kcal
Atomic # 8 Polarization: -11.15 SS G_CDS: 0.04 Total: -11.10 kcal
Atomic # 9 Polarization: -8.49 SS G_CDS: 0.10 Total: -8.39 kcal
Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.83 kcal
Total LS contribution 4.66 Total: 4.66 kcal
Total: -34.39 -5.37 -39.76 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000139529608.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.704 kcal
(2) G-P(sol) polarization free energy of solvation -34.385 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.089 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.372 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.461 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds