Wall clock time and date at job start Tue Mar 31 2020 13:48:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31299 * 1
3 3 Si 1.86799 * 120.00261 * 2 1
4 4 H 1.48498 * 109.47167 * 270.00744 * 3 2 1
5 5 H 1.48501 * 109.46547 * 30.00274 * 3 2 1
6 6 H 1.48503 * 109.47120 * 149.99970 * 3 2 1
7 7 C 1.38993 * 119.99723 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99475 * 179.97438 * 7 2 1
9 9 N 1.37317 * 119.99918 * 359.97438 * 7 2 1
10 10 C 1.36499 * 126.06293 * 180.02562 * 9 7 2
11 11 C 1.35701 * 107.50058 * 179.97438 * 10 9 7
12 12 N 1.40524 * 126.07931 * 180.26862 * 11 10 9
13 13 C 1.34782 * 120.00036 * 179.71106 * 12 11 10
14 14 O 1.21582 * 119.99348 * 359.97438 * 13 12 11
15 15 C 1.47813 * 120.00173 * 179.97438 * 13 12 11
16 16 C 1.39602 * 120.14824 * 359.72502 * 15 13 12
17 17 C 1.37939 * 119.85453 * 179.74377 * 16 15 13
18 18 C 1.38386 * 120.14132 * 0.55303 * 17 16 15
19 19 C 1.38338 * 120.29598 * 359.69703 * 18 17 16
20 20 C 1.37974 * 120.14880 * 0.02562 * 19 18 17
21 21 C 1.50692 * 120.07777 * 179.97438 * 20 19 18
22 22 F 1.39905 * 109.47102 * 0.02562 * 21 20 19
23 23 F 1.39902 * 109.47438 * 120.01919 * 21 20 19
24 24 F 1.39900 * 109.47246 * 240.02027 * 21 20 19
25 25 C 1.40665 * 107.83127 * 359.97438 * 11 10 9
26 26 N 1.30898 * 108.38597 * 0.02562 * 25 11 10
27 27 H 0.96996 * 119.99943 * 359.97438 * 1 2 3
28 28 H 1.07999 * 126.24773 * 359.97438 * 10 9 7
29 29 H 0.96997 * 120.00448 * 359.70316 * 12 11 10
30 30 H 1.07998 * 120.07288 * 359.97438 * 16 15 13
31 31 H 1.07997 * 119.92741 * 180.27158 * 17 16 15
32 32 H 1.07999 * 119.84869 * 179.71956 * 18 17 16
33 33 H 1.08003 * 119.92521 * 179.97438 * 19 18 17
34 34 H 1.08000 * 125.80473 * 180.02562 * 25 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3130 0.0000 0.0000
3 14 2.2471 1.6177 0.0000
4 1 2.4944 2.0465 -1.4000
5 1 1.4445 2.6525 0.7001
6 1 3.5446 1.4401 0.7001
7 6 2.0079 -1.2037 -0.0005
8 1 3.0879 -1.2037 -0.0010
9 7 1.3212 -2.3929 -0.0005
10 6 1.8750 -3.6405 -0.0005
11 6 0.8576 -4.5385 0.0000
12 7 0.9887 -5.9376 0.0056
13 6 -0.1105 -6.7175 0.0114
14 8 -1.2155 -6.2104 0.0123
15 6 0.0274 -8.1892 0.0166
16 6 1.2947 -8.7747 0.0098
17 6 1.4164 -10.1486 0.0201
18 6 0.2856 -10.9464 0.0256
19 6 -0.9732 -10.3727 0.0272
20 6 -1.1090 -8.9996 0.0227
21 6 -2.4810 -8.3764 0.0238
22 9 -3.4511 -9.3844 0.0303
23 9 -2.6300 -7.5787 1.1634
24 9 -2.6357 -7.5874 -1.1211
25 6 -0.3515 -3.8197 0.0010
26 7 -0.0715 -2.5410 0.0004
27 1 -0.4850 0.8400 0.0004
28 1 2.9301 -3.8709 -0.0009
29 1 1.8703 -6.3422 0.0051
30 1 2.1779 -8.1532 0.0002
31 1 2.3962 -10.6028 0.0192
32 1 0.3863 -12.0217 0.0291
33 1 -1.8517 -11.0009 0.0311
34 1 -1.3422 -4.2496 0.0020
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000139529608.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:48:35
Heat of formation + Delta-G solvation = -85.585967 kcal
Electronic energy + Delta-G solvation = -27067.227160 eV
Core-core repulsion = 22551.762792 eV
Total energy + Delta-G solvation = -4515.464368 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 325.078 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-51.02103 -48.59225 -48.41901 -41.86476 -40.90714 -39.28385 -36.06621 -35.08504
-32.99846 -32.63312 -32.07481 -29.58917 -27.30900 -26.68834 -24.91432 -23.21884
-22.89885 -21.94042 -21.23320 -19.73435 -19.34237 -19.32297 -19.17794 -18.16760
-17.42615 -17.02741 -16.42673 -16.33977 -16.03855 -15.67473 -15.66516 -15.39585
-15.18085 -15.13046 -14.90182 -14.78084 -14.75801 -14.61552 -14.32650 -13.75215
-13.64753 -13.49046 -13.32560 -12.91539 -12.87567 -12.63414 -12.26728 -12.08612
-11.87618 -11.03117 -10.87736 -10.78090 -10.29107 -10.16770 -10.09220 -8.55081
-8.47244 -6.25002 -0.45313 0.06585 1.26035 1.39924 1.58004 1.61254
1.72173 1.88415 1.99068 2.22655 2.39961 2.71633 2.80635 2.89213
3.09278 3.16692 3.51258 3.65690 3.76363 4.05207 4.28354 4.29187
4.42111 4.48695 4.59226 4.78307 4.98391 5.00173 5.13119 5.20394
5.27921 5.31242 5.40581 5.72870 5.94864 6.28795 6.63371 6.72314
7.27528 7.45837 7.66493 8.52120
Molecular weight = 325.08amu
Principal moments of inertia in cm(-1)
A = 0.025022 B = 0.003122 C = 0.002825
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1118.742976 B = 8966.186448 C = 9910.415899
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.826 5.826
2 C -0.008 4.008
3 Si 1.021 2.979
4 H -0.264 1.264
5 H -0.279 1.279
6 H -0.242 1.242
7 C -0.354 4.354
8 H 0.144 0.856
9 N -0.167 5.167
10 C -0.076 4.076
11 C -0.047 4.047
12 N -0.601 5.601
13 C 0.521 3.479
14 O -0.557 6.557
15 C -0.101 4.101
16 C -0.087 4.087
17 C -0.081 4.081
18 C -0.084 4.084
19 C -0.084 4.084
20 C -0.154 4.154
21 C 0.505 3.495
22 F -0.181 7.181
23 F -0.184 7.184
24 F -0.184 7.184
25 C -0.057 4.057
26 N -0.311 5.311
27 H 0.276 0.724
28 H 0.193 0.807
29 H 0.420 0.580
30 H 0.161 0.839
31 H 0.183 0.817
32 H 0.181 0.819
33 H 0.158 0.842
34 H 0.163 0.837
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.641 -23.483 0.071 24.695
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.453 5.453
2 C -0.220 4.220
3 Si 0.840 3.160
4 H -0.189 1.189
5 H -0.204 1.204
6 H -0.165 1.165
7 C -0.484 4.484
8 H 0.162 0.838
9 N 0.065 4.935
10 C -0.226 4.226
11 C -0.153 4.153
12 N -0.246 5.246
13 C 0.310 3.690
14 O -0.436 6.436
15 C -0.104 4.104
16 C -0.105 4.105
17 C -0.098 4.098
18 C -0.102 4.102
19 C -0.102 4.102
20 C -0.156 4.156
21 C 0.451 3.549
22 F -0.163 7.163
23 F -0.165 7.165
24 F -0.165 7.165
25 C -0.232 4.232
26 N -0.143 5.143
27 H 0.086 0.914
28 H 0.210 0.790
29 H 0.259 0.741
30 H 0.179 0.821
31 H 0.200 0.800
32 H 0.198 0.802
33 H 0.176 0.824
34 H 0.180 0.820
Dipole moment (debyes) X Y Z Total
from point charges 6.168 -21.780 0.076 22.637
hybrid contribution -0.113 0.305 -0.017 0.326
sum 6.055 -21.475 0.060 22.312
Atomic orbital electron populations
1.70415 1.08544 1.29106 1.37285 1.26930 0.96452 1.04485 0.94100
0.84569 0.78319 0.73918 0.79232 1.18885 1.20392 1.16471 1.20668
0.93054 0.80805 1.53922 0.83846 1.44866 1.03575 1.04907 1.40189
1.22005 0.98812 0.83995 1.17801 1.17289 0.92925 0.83320 1.21769
1.42158 1.09316 1.02496 1.70661 1.18800 0.84325 0.87646 0.78261
1.90761 1.26763 1.75498 1.50621 1.19621 0.95381 0.90625 1.04790
1.21719 0.94707 0.97329 0.96769 1.21875 1.01546 0.91900 0.94522
1.21893 0.90240 1.02862 0.95213 1.21336 1.01426 0.90859 0.96563
1.20111 0.89930 0.96399 1.09187 1.18397 0.86599 0.75897 0.73994
1.93121 1.66563 1.60242 1.96324 1.93196 1.96337 1.75382 1.51620
1.93196 1.96285 1.75840 1.51204 1.24131 0.99019 0.90999 1.09071
1.78166 0.92143 1.16460 1.27560 0.91443 0.78986 0.74137 0.82141
0.79998 0.80154 0.82430 0.82010
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -48.58 11.81 21.66 0.26 -48.32 16
2 C -0.01 -0.43 5.50 84.95 0.47 0.04 16
3 Si 1.02 38.81 29.55 68.60 2.03 40.83 16
4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16
5 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16
6 H -0.24 -8.23 7.11 99.48 0.71 -7.52 16
7 C -0.35 -18.77 10.25 84.02 0.86 -17.91 16
8 H 0.14 6.50 7.83 -2.91 -0.02 6.48 16
9 N -0.17 -9.35 3.74 -189.99 -0.71 -10.06 16
10 C -0.08 -3.48 11.49 83.38 0.96 -2.53 16
11 C -0.05 -2.19 6.90 37.75 0.26 -1.93 16
12 N -0.60 -21.03 5.41 -306.53 -1.66 -22.69 16
13 C 0.52 19.29 7.55 86.78 0.66 19.95 16
14 O -0.56 -25.85 8.45 -3.97 -0.03 -25.88 16
15 C -0.10 -2.66 5.85 -20.09 -0.12 -2.78 16
16 C -0.09 -1.33 9.54 22.53 0.21 -1.11 16
17 C -0.08 -0.67 10.03 22.23 0.22 -0.44 16
18 C -0.08 -0.72 10.04 22.33 0.22 -0.50 16
19 C -0.08 -1.35 9.42 22.23 0.21 -1.14 16
20 C -0.15 -4.00 5.40 -19.61 -0.11 -4.11 16
21 C 0.51 16.72 2.78 71.23 0.20 16.92 16
22 F -0.18 -5.07 15.98 44.97 0.72 -4.35 16
23 F -0.18 -7.22 15.01 44.97 0.68 -6.54 16
24 F -0.18 -7.21 15.01 44.97 0.68 -6.53 16
25 C -0.06 -3.23 10.85 85.42 0.93 -2.31 16
26 N -0.31 -19.30 10.39 -56.46 -0.59 -19.89 16
27 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16
28 H 0.19 6.74 8.06 -2.91 -0.02 6.72 16
29 H 0.42 10.09 6.86 -92.71 -0.64 9.46 16
30 H 0.16 1.60 6.41 -2.91 -0.02 1.58 16
31 H 0.18 0.00 8.06 -2.91 -0.02 -0.02 16
32 H 0.18 0.08 8.06 -2.91 -0.02 0.06 16
33 H 0.16 1.98 7.15 -2.91 -0.02 1.95 16
34 H 0.16 9.49 5.92 -2.91 -0.02 9.47 16
Total: -1.00 -84.65 308.93 6.90 -77.75
By element:
Atomic # 1 Polarization: 22.96 SS G_CDS: 0.56 Total: 23.53 kcal
Atomic # 6 Polarization: -2.82 SS G_CDS: 4.98 Total: 2.16 kcal
Atomic # 7 Polarization: -98.26 SS G_CDS: -2.70 Total: -100.96 kcal
Atomic # 8 Polarization: -25.85 SS G_CDS: -0.03 Total: -25.88 kcal
Atomic # 9 Polarization: -19.49 SS G_CDS: 2.07 Total: -17.42 kcal
Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.83 kcal
Total: -84.65 6.90 -77.75 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000139529608.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.838 kcal
(2) G-P(sol) polarization free energy of solvation -84.651 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.488 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.902 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.748 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.586 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds