Wall clock time and date at job start Tue Mar 31 2020 13:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30623 * 1 3 3 Si 1.86804 * 119.99921 * 2 1 4 4 H 1.48506 * 109.46860 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47104 * 299.99587 * 3 2 1 6 6 H 1.48497 * 109.47226 * 60.00075 * 3 2 1 7 7 C 1.40142 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99729 * 180.02562 * 7 2 1 9 9 C 1.41769 * 119.99810 * 0.02562 * 7 2 1 10 10 O 1.21773 * 120.00143 * 359.97438 * 9 7 2 11 11 N 1.34774 * 119.99824 * 179.97438 * 9 7 2 12 12 C 1.39429 * 119.99902 * 185.27325 * 11 9 7 13 13 C 1.39141 * 120.01649 * 213.38750 * 12 11 9 14 14 C 1.37912 * 119.98151 * 179.72366 * 13 12 11 15 15 C 1.38996 * 120.01829 * 0.24952 * 14 13 12 16 16 N 1.40099 * 119.98317 * 179.97438 * 15 14 13 17 17 N 1.40086 * 126.05613 * 325.03008 * 16 15 14 18 18 C 1.30899 * 108.21733 * 179.97438 * 17 16 15 19 19 C 1.39921 * 108.24060 * 0.02562 * 18 17 16 20 20 C 1.35248 * 126.05033 * 144.71951 * 16 15 14 21 21 C 1.50701 * 126.14438 * 0.02562 * 20 16 15 22 22 F 1.39893 * 109.46932 * 90.00258 * 21 20 16 23 23 F 1.39901 * 109.46967 * 210.00203 * 21 20 16 24 24 F 1.39906 * 109.46902 * 329.99778 * 21 20 16 25 25 C 1.38989 * 120.03225 * 359.97438 * 15 14 13 26 26 C 1.37918 * 120.01967 * 0.02562 * 25 15 14 27 27 H 0.97008 * 120.00271 * 0.02562 * 1 2 3 28 28 H 0.96995 * 119.99992 * 5.27575 * 11 9 7 29 29 H 1.07995 * 120.00809 * 0.02562 * 13 12 11 30 30 H 1.08001 * 119.99123 * 180.27806 * 14 13 12 31 31 H 1.08004 * 125.87276 * 180.02562 * 18 17 16 32 32 H 1.08004 * 126.02807 * 180.02562 * 19 18 17 33 33 H 1.07998 * 119.99090 * 179.97438 * 25 15 14 34 34 H 1.08003 * 120.00486 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.7003 1.3464 0.0006 5 1 1.8816 2.3964 -1.2125 6 1 1.8815 2.3965 1.2125 7 6 2.0070 -1.2137 0.0005 8 1 3.0869 -1.2136 0.0010 9 6 1.2981 -2.4414 0.0005 10 8 0.0804 -2.4414 0.0005 11 7 1.9720 -3.6086 0.0005 12 6 1.2793 -4.8135 -0.1104 13 6 1.7500 -5.9495 0.5406 14 6 1.0612 -7.1396 0.4350 15 6 -0.1003 -7.2056 -0.3258 16 7 -0.7992 -8.4151 -0.4330 17 7 -0.2310 -9.6949 -0.4735 18 6 -1.1995 -10.5695 -0.5763 19 6 -2.4145 -9.8762 -0.6052 20 6 -2.1423 -8.5541 -0.5099 21 6 -3.1538 -7.4370 -0.4960 22 9 -3.3995 -7.0143 -1.8067 23 9 -4.3451 -7.8938 0.0778 24 9 -2.6556 -6.3661 0.2538 25 6 -0.5686 -6.0724 -0.9802 26 6 0.1192 -4.8815 -0.8755 27 1 -0.4851 0.8401 -0.0004 28 1 2.9389 -3.6103 0.0778 29 1 2.6519 -5.8982 1.1324 30 1 1.4240 -8.0204 0.9439 31 1 -1.0810 -11.6417 -0.6296 32 1 -3.3966 -10.3186 -0.6843 33 1 -1.4708 -6.1246 -1.5714 34 1 -0.2452 -4.0009 -1.3838 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153647541.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:28 Heat of formation + Delta-G solvation = -64.157319 kcal Electronic energy + Delta-G solvation = -27095.466727 eV Core-core repulsion = 22580.931575 eV Total energy + Delta-G solvation = -4514.535152 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.33845 -47.85758 -47.74301 -41.73617 -39.34839 -37.28086 -34.22770 -32.75921 -32.17469 -31.51846 -30.57685 -28.30959 -26.47979 -26.09074 -23.19460 -22.86553 -21.25133 -20.85017 -19.97955 -18.86055 -18.67148 -18.38235 -17.67484 -16.56298 -16.26427 -15.72138 -15.49436 -14.80995 -14.72494 -14.56820 -14.36983 -14.24001 -14.18893 -14.09509 -13.88457 -13.80622 -13.54145 -13.17278 -12.82518 -12.69104 -12.41302 -12.16373 -12.10116 -11.38168 -11.23215 -11.14586 -10.95012 -10.74285 -10.38443 -10.17537 -9.61952 -9.13463 -8.80402 -8.69701 -7.85987 -7.12790 -6.47550 -5.01191 0.84086 1.70807 1.87768 1.94798 2.38729 2.58702 2.98669 3.07850 3.12171 3.44884 3.86044 3.90197 4.00254 4.17817 4.35149 4.47194 4.48209 5.00453 5.09681 5.13300 5.22104 5.50888 5.57877 5.65596 5.74405 5.83817 6.21838 6.25936 6.30706 6.59710 6.81167 6.89992 7.12564 7.17095 7.33497 7.71406 7.89614 8.01438 8.70478 9.12622 10.26797 10.45861 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.022633 B = 0.003306 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.826424 B = 8468.231717 C = 9441.951379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.087 3.913 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.539 3.461 10 O -0.563 6.563 11 N -0.697 5.697 12 C 0.215 3.785 13 C -0.169 4.169 14 C -0.067 4.067 15 C 0.059 3.941 16 N -0.267 5.267 17 N -0.257 5.257 18 C 0.040 3.960 19 C -0.205 4.205 20 C -0.020 4.020 21 C 0.536 3.464 22 F -0.167 7.167 23 F -0.164 7.164 24 F -0.156 7.156 25 C -0.090 4.090 26 C -0.111 4.111 27 H 0.274 0.726 28 H 0.395 0.605 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.197 0.803 32 H 0.163 0.837 33 H 0.120 0.880 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.351 -16.173 -1.165 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.137 4.137 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.570 4.570 8 H 0.090 0.910 9 C 0.349 3.651 10 O -0.446 6.446 11 N -0.339 5.339 12 C 0.114 3.886 13 C -0.191 4.191 14 C -0.088 4.088 15 C -0.032 4.032 16 N -0.043 5.043 17 N -0.078 5.078 18 C -0.144 4.144 19 C -0.236 4.236 20 C -0.148 4.148 21 C 0.480 3.520 22 F -0.148 7.148 23 F -0.145 7.145 24 F -0.137 7.137 25 C -0.111 4.111 26 C -0.133 4.133 27 H 0.085 0.915 28 H 0.229 0.771 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.214 0.786 32 H 0.180 0.820 33 H 0.138 0.862 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.079 -15.628 -1.082 15.803 hybrid contribution -0.181 0.746 0.042 0.769 sum -2.260 -14.882 -1.039 15.089 Atomic orbital electron populations 1.70007 1.07313 1.28009 1.31788 1.25779 0.94682 1.00795 0.92399 0.86204 0.80512 0.80972 0.78519 1.18516 1.19849 1.19874 1.20089 0.94465 0.89878 1.52598 0.90978 1.17135 0.87686 0.82003 0.78304 1.90680 1.13455 1.85792 1.54679 1.44360 1.09829 1.04352 1.75367 1.18135 0.92764 0.86726 0.91011 1.20787 1.02997 0.92207 1.03144 1.20497 0.93254 0.98018 0.96982 1.17333 0.97583 0.81661 1.06604 1.45682 1.01766 1.05359 1.51475 1.77604 1.21796 0.86499 1.21930 1.24001 0.89634 1.00262 1.00476 1.21309 1.00926 0.89972 1.11363 1.20921 0.85972 0.95644 1.12223 1.17286 0.79555 0.80648 0.74558 1.93238 1.94497 1.90653 1.36432 1.93222 1.47752 1.88884 1.84651 1.93367 1.86741 1.57251 1.76344 1.20922 0.99895 0.91616 0.98646 1.21187 0.95767 0.97244 0.99107 0.91525 0.77107 0.85214 0.85390 0.78595 0.81957 0.86244 0.83122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.84 11.73 55.56 0.65 -20.18 16 2 C 0.09 2.26 5.50 -17.35 -0.10 2.16 16 3 Si 0.91 18.74 29.56 -169.99 -5.02 13.71 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.54 -13.99 9.31 -37.52 -0.35 -14.34 16 8 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 9 C 0.54 14.30 7.30 -14.91 -0.11 14.19 16 10 O -0.56 -16.92 12.57 5.12 0.06 -16.86 16 11 N -0.70 -14.81 5.31 -12.41 -0.07 -14.88 16 12 C 0.22 4.29 6.27 -83.74 -0.53 3.77 16 13 C -0.17 -2.80 9.96 -39.37 -0.39 -3.19 16 14 C -0.07 -1.08 9.75 -39.42 -0.38 -1.47 16 15 C 0.06 1.02 5.88 -83.52 -0.49 0.53 16 16 N -0.27 -4.19 3.73 -6.92 -0.03 -4.22 16 17 N -0.26 -3.64 12.34 30.65 0.38 -3.26 16 18 C 0.04 0.42 12.03 -17.32 -0.21 0.21 16 19 C -0.21 -2.26 10.39 -39.99 -0.42 -2.67 16 20 C -0.02 -0.28 6.22 -82.13 -0.51 -0.79 16 21 C 0.54 7.67 2.77 36.01 0.10 7.77 16 22 F -0.17 -2.38 15.81 2.25 0.04 -2.34 16 23 F -0.16 -2.10 17.03 2.25 0.04 -2.06 16 24 F -0.16 -2.66 13.73 2.25 0.03 -2.63 16 25 C -0.09 -1.64 7.23 -39.42 -0.29 -1.93 16 26 C -0.11 -2.31 8.64 -39.37 -0.34 -2.65 16 27 H 0.27 6.91 8.29 -40.82 -0.34 6.57 16 28 H 0.40 7.05 8.77 -40.82 -0.36 6.69 16 29 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 31 H 0.20 1.19 8.06 -52.48 -0.42 0.76 16 32 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.12 2.08 5.05 -52.49 -0.26 1.82 16 34 H 0.15 3.54 6.42 -52.48 -0.34 3.20 16 LS Contribution 312.99 15.07 4.72 4.72 Total: -1.00 -32.06 312.99 -5.41 -37.46 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -2.20 Total: 8.95 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -4.01 Total: 1.59 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.94 Total: -42.54 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: 0.06 Total: -16.86 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 0.10 Total: -7.03 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.06 -5.41 -37.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153647541.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.694 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds