Wall clock time and date at job start Tue Mar 31 2020 14:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47177 * 2 1 4 4 C 1.50703 * 109.47112 * 119.99737 * 2 1 3 5 5 C 1.38236 * 120.00267 * 93.63138 * 4 2 1 6 6 C 1.38220 * 120.00824 * 179.74949 * 5 4 2 7 7 C 1.38267 * 120.02136 * 0.54813 * 6 5 4 8 8 C 1.38196 * 120.00445 * 359.70485 * 7 6 5 9 9 C 1.38310 * 120.00650 * 273.90773 * 4 2 1 10 10 Br 1.89098 * 120.00846 * 359.97438 * 9 4 2 11 11 N 1.46896 * 109.47351 * 239.99970 * 2 1 3 12 12 C 1.46901 * 110.99993 * 51.47680 * 11 2 1 13 13 C 1.46898 * 111.00254 * 175.43017 * 11 2 1 14 14 C 1.52993 * 109.47329 * 169.99909 * 13 11 2 15 15 C 1.53001 * 109.47317 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47342 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99926 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99933 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00477 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00032 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46748 * 59.99644 * 20 18 16 22 22 H 1.48497 * 109.47308 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.46890 * 299.99963 * 20 18 16 24 24 H 1.09001 * 109.47143 * 300.00088 * 1 2 3 25 25 H 1.08999 * 109.47070 * 60.00237 * 1 2 3 26 26 H 1.09004 * 109.46732 * 180.02562 * 1 2 3 27 27 H 1.07996 * 119.99759 * 0.02562 * 5 4 2 28 28 H 1.08001 * 119.99475 * 180.27548 * 6 5 4 29 29 H 1.07995 * 119.99872 * 179.72660 * 7 6 5 30 30 H 1.08005 * 119.99924 * 180.02562 * 8 7 6 31 31 H 1.08999 * 109.46818 * 178.21966 * 12 11 2 32 32 H 1.08997 * 109.47043 * 58.21618 * 12 11 2 33 33 H 1.09006 * 109.47019 * 298.21734 * 12 11 2 34 34 H 1.09000 * 109.47069 * 290.00602 * 13 11 2 35 35 H 1.09005 * 109.46734 * 50.00013 * 13 11 2 36 36 H 1.09000 * 109.47137 * 299.99754 * 14 13 11 37 37 H 1.08994 * 109.47381 * 59.99936 * 14 13 11 38 38 H 1.08997 * 109.47219 * 300.00178 * 15 14 13 39 39 H 1.09005 * 109.46779 * 60.00084 * 15 14 13 40 40 H 0.96999 * 120.00822 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.3343 -2.0582 1.1757 6 6 2.7999 -2.7087 2.3029 7 6 2.9532 -2.0143 3.4886 8 6 2.6467 -0.6679 3.5456 9 6 2.1860 -0.0151 2.4163 10 35 1.7664 1.8271 2.4936 11 7 2.0197 -0.6925 -1.1994 12 6 1.3899 -0.1538 -2.4123 13 6 3.4841 -0.6182 -1.2892 14 6 3.9749 -1.5501 -2.3988 15 6 5.5002 -1.4732 -2.4919 16 6 5.9836 -2.3908 -3.5853 17 1 5.2740 -2.9711 -4.1564 18 6 7.3319 -2.4902 -3.8559 19 7 8.1961 -1.7839 -3.1602 20 14 7.9313 -3.6281 -5.2107 21 1 7.3350 -3.2127 -6.5058 22 1 9.4116 -3.5533 -5.3011 23 1 7.5235 -5.0223 -4.9026 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.2105 -2.6021 0.2510 28 1 3.0400 -3.7608 2.2587 29 1 3.3129 -2.5239 4.3702 30 1 2.7669 -0.1254 4.4718 31 1 1.7936 -0.6625 -3.2878 32 1 1.5961 0.9140 -2.4852 33 1 0.3127 -0.3134 -2.3639 34 1 3.7827 0.4054 -1.5157 35 1 3.9223 -0.9226 -0.3387 36 1 3.6763 -2.5737 -2.1722 37 1 3.5368 -1.2459 -3.3492 38 1 5.7992 -0.4498 -2.7183 39 1 5.9380 -1.7779 -1.5413 40 1 9.1446 -1.8535 -3.3507 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171035214.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:21 Heat of formation + Delta-G solvation = 20.338082 kcal Electronic energy + Delta-G solvation = -19747.868430 eV Core-core repulsion = 16801.366916 eV Total energy + Delta-G solvation = -2946.501514 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.87592 -37.51925 -34.10614 -32.75175 -32.01152 -30.99901 -29.55656 -28.89437 -26.90768 -25.56606 -23.28772 -22.48708 -21.87779 -19.99202 -19.80333 -16.92209 -16.35997 -16.01977 -15.42495 -14.68951 -14.61706 -14.39310 -14.30198 -13.71782 -13.42537 -13.28507 -12.81920 -12.45736 -12.22743 -12.16810 -11.81674 -11.53538 -11.34696 -11.26976 -11.06799 -10.91490 -10.85711 -10.75904 -10.52074 -10.48011 -10.14782 -9.58720 -9.30795 -9.04008 -8.80829 -8.67324 -8.31299 -8.07376 -5.96520 -3.98774 1.08250 1.30081 1.57673 3.35150 3.39419 3.41919 3.61686 4.05313 4.48721 4.58444 4.84420 5.01775 5.16950 5.23935 5.28907 5.38946 5.42312 5.45417 5.62288 5.66234 5.71980 5.81187 5.85592 5.98102 6.01163 6.09631 6.18878 6.22251 6.35312 6.40654 6.48742 6.72584 6.80830 6.83936 7.14144 7.36338 7.39159 7.71660 7.86977 8.03925 8.46905 9.08305 9.65028 11.14846 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.003347 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.152851 B = 8362.900633 C = 8733.607118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.110 3.890 3 H 0.058 0.942 4 C -0.046 4.046 5 C -0.084 4.084 6 C -0.106 4.106 7 C -0.120 4.120 8 C -0.097 4.097 9 C -0.091 4.091 10 Br -0.059 7.059 11 N -0.535 5.535 12 C 0.021 3.979 13 C 0.052 3.948 14 C -0.103 4.103 15 C 0.023 3.977 16 C -0.518 4.518 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.147 0.853 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.077 0.923 32 H 0.022 0.978 33 H 0.066 0.934 34 H 0.028 0.972 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.012 0.988 39 H 0.015 0.985 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.978 5.289 14.393 22.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.001 3.999 3 H 0.076 0.924 4 C -0.048 4.048 5 C -0.102 4.102 6 C -0.125 4.125 7 C -0.139 4.139 8 C -0.117 4.117 9 C -0.170 4.170 10 Br 0.027 6.973 11 N -0.260 5.260 12 C -0.127 4.127 13 C -0.075 4.075 14 C -0.140 4.140 15 C -0.015 4.015 16 C -0.556 4.556 17 H 0.072 0.928 18 C -0.144 4.144 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.164 0.836 28 H 0.147 0.853 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.096 0.904 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.031 0.969 39 H 0.033 0.967 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.081 5.540 14.475 23.065 hybrid contribution 0.924 -0.108 -0.751 1.196 sum -16.157 5.432 13.725 21.885 Atomic orbital electron populations 1.21884 0.93262 1.02734 1.02047 1.20663 0.95640 0.95395 0.88164 0.92401 1.19673 0.97724 0.94353 0.93053 1.21259 0.96504 0.93303 0.99183 1.21393 0.97834 1.00511 0.92727 1.21141 1.00466 0.93776 0.98480 1.20990 0.98761 0.94924 0.96979 1.21644 1.07908 0.90660 0.96815 1.96646 1.93171 1.08751 1.98747 1.62091 1.07544 1.55001 1.01330 1.22465 0.99519 0.97524 0.93222 1.22373 0.85052 0.98978 1.01118 1.21641 0.99242 0.97781 0.95381 1.19058 0.88536 0.96955 0.96948 1.21204 0.91887 1.24828 1.17728 0.92764 1.25019 0.97024 0.95930 0.96457 1.69956 1.02010 1.41048 1.40562 0.86677 0.77521 0.81386 0.82525 1.20286 1.21331 1.20237 0.92097 0.91783 0.91648 0.83569 0.85342 0.85451 0.85372 0.90409 0.95920 0.91513 0.95366 0.91111 0.92707 0.93387 0.96916 0.96696 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.65 37.16 0.32 -1.24 16 2 C 0.11 1.45 1.75 -68.86 -0.12 1.33 16 3 H 0.06 0.82 6.83 -51.93 -0.35 0.46 16 4 C -0.05 -0.61 4.14 -104.59 -0.43 -1.05 16 5 C -0.08 -1.12 8.05 -39.59 -0.32 -1.44 16 6 C -0.11 -1.25 10.05 -39.58 -0.40 -1.65 16 7 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16 8 C -0.10 -1.10 9.79 -39.56 -0.39 -1.48 16 9 C -0.09 -1.15 6.22 -39.52 -0.25 -1.39 16 10 Br -0.06 -0.68 31.51 -68.01 -2.14 -2.82 16 11 N -0.54 -7.88 3.59 -236.29 -0.85 -8.73 16 12 C 0.02 0.27 8.74 60.07 0.52 0.80 16 13 C 0.05 0.92 4.50 -3.83 -0.02 0.90 16 14 C -0.10 -2.13 5.09 -26.73 -0.14 -2.26 16 15 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 16 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 17 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 20 Si 0.89 21.82 29.54 -169.99 -5.02 16.79 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H 0.06 0.63 7.78 -51.93 -0.40 0.23 16 25 H 0.06 0.64 6.35 -51.93 -0.33 0.31 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.15 2.06 7.24 -52.49 -0.38 1.68 16 28 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 30 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 31 H 0.08 1.10 6.23 -51.93 -0.32 0.78 16 32 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.75 6.31 -51.93 -0.33 0.42 16 34 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 35 H 0.07 1.31 6.17 -51.93 -0.32 0.99 16 36 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.98 6.44 -51.93 -0.33 0.64 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 338.22 15.07 5.10 5.10 Total: -1.00 -30.16 338.22 -10.46 -40.62 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -6.12 Total: -2.15 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -2.16 Total: -22.28 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: -0.11 Total: -35.25 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 35 Polarization: -0.68 SS G_CDS: -2.14 Total: -2.82 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.16 -10.46 -40.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171035214.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.955 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds