Wall clock time and date at job start Tue Mar 31 2020 14:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47177 * 2 1 4 4 C 1.50703 * 109.47112 * 119.99737 * 2 1 3 5 5 C 1.38236 * 120.00267 * 93.63138 * 4 2 1 6 6 C 1.38220 * 120.00824 * 179.74949 * 5 4 2 7 7 C 1.38267 * 120.02136 * 0.54813 * 6 5 4 8 8 C 1.38196 * 120.00445 * 359.70485 * 7 6 5 9 9 C 1.38310 * 120.00650 * 273.90773 * 4 2 1 10 10 Br 1.89098 * 120.00846 * 359.97438 * 9 4 2 11 11 N 1.46896 * 109.47351 * 239.99970 * 2 1 3 12 12 C 1.46901 * 110.99993 * 51.47680 * 11 2 1 13 13 C 1.46898 * 111.00254 * 175.43017 * 11 2 1 14 14 C 1.52993 * 109.47329 * 169.99909 * 13 11 2 15 15 C 1.53001 * 109.47317 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47342 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99926 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99933 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00477 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00032 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46748 * 59.99644 * 20 18 16 22 22 H 1.48497 * 109.47308 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.46890 * 299.99963 * 20 18 16 24 24 H 1.09001 * 109.47143 * 300.00088 * 1 2 3 25 25 H 1.08999 * 109.47070 * 60.00237 * 1 2 3 26 26 H 1.09004 * 109.46732 * 180.02562 * 1 2 3 27 27 H 1.07996 * 119.99759 * 0.02562 * 5 4 2 28 28 H 1.08001 * 119.99475 * 180.27548 * 6 5 4 29 29 H 1.07995 * 119.99872 * 179.72660 * 7 6 5 30 30 H 1.08005 * 119.99924 * 180.02562 * 8 7 6 31 31 H 1.08999 * 109.46818 * 178.21966 * 12 11 2 32 32 H 1.08997 * 109.47043 * 58.21618 * 12 11 2 33 33 H 1.09006 * 109.47019 * 298.21734 * 12 11 2 34 34 H 1.09000 * 109.47069 * 290.00602 * 13 11 2 35 35 H 1.09005 * 109.46734 * 50.00013 * 13 11 2 36 36 H 1.09000 * 109.47137 * 299.99754 * 14 13 11 37 37 H 1.08994 * 109.47381 * 59.99936 * 14 13 11 38 38 H 1.08997 * 109.47219 * 300.00178 * 15 14 13 39 39 H 1.09005 * 109.46779 * 60.00084 * 15 14 13 40 40 H 0.96999 * 120.00822 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.3343 -2.0582 1.1757 6 6 2.7999 -2.7087 2.3029 7 6 2.9532 -2.0143 3.4886 8 6 2.6467 -0.6679 3.5456 9 6 2.1860 -0.0151 2.4163 10 35 1.7664 1.8271 2.4936 11 7 2.0197 -0.6925 -1.1994 12 6 1.3899 -0.1538 -2.4123 13 6 3.4841 -0.6182 -1.2892 14 6 3.9749 -1.5501 -2.3988 15 6 5.5002 -1.4732 -2.4919 16 6 5.9836 -2.3908 -3.5853 17 1 5.2740 -2.9711 -4.1564 18 6 7.3319 -2.4902 -3.8559 19 7 8.1961 -1.7839 -3.1602 20 14 7.9313 -3.6281 -5.2107 21 1 7.3350 -3.2127 -6.5058 22 1 9.4116 -3.5533 -5.3011 23 1 7.5235 -5.0223 -4.9026 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.2105 -2.6021 0.2510 28 1 3.0400 -3.7608 2.2587 29 1 3.3129 -2.5239 4.3702 30 1 2.7669 -0.1254 4.4718 31 1 1.7936 -0.6625 -3.2878 32 1 1.5961 0.9140 -2.4852 33 1 0.3127 -0.3134 -2.3639 34 1 3.7827 0.4054 -1.5157 35 1 3.9223 -0.9226 -0.3387 36 1 3.6763 -2.5737 -2.1722 37 1 3.5368 -1.2459 -3.3492 38 1 5.7992 -0.4498 -2.7183 39 1 5.9380 -1.7779 -1.5413 40 1 9.1446 -1.8535 -3.3507 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171035214.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:21 Heat of formation + Delta-G solvation = 5.104030 kcal Electronic energy + Delta-G solvation = -19748.529028 eV Core-core repulsion = 16801.366916 eV Total energy + Delta-G solvation = -2947.162112 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.87297 -38.66066 -35.92217 -34.21537 -33.22390 -32.32980 -30.66788 -29.94103 -28.32977 -27.09106 -24.61762 -23.81869 -22.96503 -21.64351 -20.95050 -18.47687 -17.86178 -17.24594 -16.54708 -16.33022 -16.02784 -15.70165 -15.36892 -14.94964 -14.45459 -14.33315 -14.29173 -13.91485 -13.69394 -13.32375 -13.19506 -12.97533 -12.74379 -12.51264 -12.46533 -12.38899 -12.19652 -12.04078 -11.85557 -11.76939 -11.40853 -11.34353 -11.09841 -11.06842 -10.53676 -9.75597 -9.60376 -9.28515 -8.18679 -6.30072 0.15386 0.37647 0.64427 1.40620 1.43895 1.51788 2.41699 2.68746 2.89051 3.14371 3.61183 3.95203 4.08974 4.12118 4.21220 4.26541 4.35411 4.40494 4.54322 4.59090 4.66621 4.71313 4.73939 4.83927 4.88148 4.95948 5.05226 5.09635 5.11841 5.24578 5.28089 5.30212 5.44979 5.53740 5.55665 5.74621 5.86463 5.92616 6.06211 6.18587 6.27645 6.86611 7.39278 8.93145 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.003347 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.152851 B = 8362.900633 C = 8733.607118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.111 3.889 3 H 0.049 0.951 4 C -0.061 4.061 5 C -0.101 4.101 6 C -0.113 4.113 7 C -0.117 4.117 8 C -0.100 4.100 9 C -0.105 4.105 10 Br -0.053 7.053 11 N -0.533 5.533 12 C 0.019 3.981 13 C 0.069 3.931 14 C -0.085 4.085 15 C 0.028 3.972 16 C -0.541 4.541 17 H 0.061 0.939 18 C 0.000 4.000 19 N -0.935 5.935 20 Si 0.965 3.035 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.266 1.266 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.134 0.866 28 H 0.144 0.856 29 H 0.157 0.843 30 H 0.148 0.852 31 H 0.067 0.933 32 H 0.024 0.976 33 H 0.093 0.907 34 H 0.016 0.984 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.053 0.947 38 H -0.015 1.015 39 H -0.012 1.012 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.014 4.547 14.529 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.003 3.997 3 H 0.067 0.933 4 C -0.063 4.063 5 C -0.120 4.120 6 C -0.131 4.131 7 C -0.136 4.136 8 C -0.119 4.119 9 C -0.185 4.185 10 Br 0.033 6.967 11 N -0.258 5.258 12 C -0.129 4.129 13 C -0.059 4.059 14 C -0.123 4.123 15 C -0.010 4.010 16 C -0.579 4.579 17 H 0.079 0.921 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.789 3.211 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.190 1.190 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.152 0.848 28 H 0.162 0.838 29 H 0.174 0.826 30 H 0.165 0.835 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.111 0.889 34 H 0.034 0.966 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.004 0.996 39 H 0.007 0.993 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.146 4.801 14.612 23.787 hybrid contribution 1.242 0.153 -0.729 1.448 sum -16.904 4.954 13.883 22.428 Atomic orbital electron populations 1.21844 0.91341 1.03059 1.02969 1.20709 0.97069 0.94571 0.87351 0.93307 1.19746 0.98573 0.94573 0.93457 1.21254 0.97801 0.93534 0.99439 1.21655 0.97345 1.01448 0.92664 1.21490 0.99395 0.93639 0.99059 1.21316 0.97933 0.95386 0.97313 1.21818 1.08401 0.91150 0.97098 1.96636 1.93149 1.08221 1.98725 1.62038 1.05290 1.55754 1.02678 1.22542 1.00887 0.97395 0.92061 1.22013 0.87407 0.97225 0.99279 1.21371 0.95429 0.98651 0.96878 1.18946 0.92139 0.94822 0.95090 1.21641 0.92555 1.25299 1.18379 0.92102 1.25986 0.97209 0.97545 0.99051 1.70099 1.02410 1.42646 1.42349 0.85507 0.76971 0.79329 0.79290 1.19148 1.20887 1.19042 0.91443 0.90578 0.91562 0.84813 0.83788 0.82573 0.83461 0.91414 0.95741 0.88900 0.96622 0.92095 0.92595 0.92840 0.99638 0.99339 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 8.65 71.98 0.62 -2.13 16 2 C 0.11 2.87 1.75 44.17 0.08 2.95 16 3 H 0.05 1.36 6.83 -2.39 -0.02 1.34 16 4 C -0.06 -1.62 4.14 -19.85 -0.08 -1.70 16 5 C -0.10 -2.69 8.05 22.26 0.18 -2.51 16 6 C -0.11 -2.54 10.05 22.27 0.22 -2.32 16 7 C -0.12 -2.30 10.05 22.27 0.22 -2.08 16 8 C -0.10 -2.11 9.79 22.28 0.22 -1.89 16 9 C -0.11 -2.57 6.22 22.31 0.14 -2.43 16 10 Br -0.05 -1.17 31.51 -20.37 -0.64 -1.82 16 11 N -0.53 -15.51 3.59 -901.47 -3.24 -18.75 16 12 C 0.02 0.47 8.74 127.69 1.12 1.59 16 13 C 0.07 2.49 4.50 86.30 0.39 2.88 16 14 C -0.09 -3.61 5.09 30.59 0.16 -3.45 16 15 C 0.03 1.50 4.97 29.85 0.15 1.65 16 16 C -0.54 -31.28 9.11 25.60 0.23 -31.04 16 17 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 18 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 19 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16 20 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H 0.07 1.30 7.78 -2.39 -0.02 1.28 16 25 H 0.08 1.35 6.35 -2.39 -0.02 1.34 16 26 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.13 3.81 7.24 -2.91 -0.02 3.79 16 28 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 29 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 30 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.07 1.86 6.23 -2.39 -0.01 1.84 16 32 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.09 1.88 6.31 -2.38 -0.02 1.86 16 34 H 0.02 0.60 8.12 -2.39 -0.02 0.58 16 35 H 0.06 2.33 6.17 -2.38 -0.01 2.32 16 36 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.05 2.19 6.44 -2.39 -0.02 2.17 16 38 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 39 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 40 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -65.14 338.22 3.55 -61.59 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 1.01 Total: 9.95 kcal Atomic # 6 Polarization: -44.15 SS G_CDS: 4.11 Total: -40.05 kcal Atomic # 7 Polarization: -73.37 SS G_CDS: -2.95 Total: -76.32 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 35 Polarization: -1.17 SS G_CDS: -0.64 Total: -1.82 kcal Total: -65.14 3.55 -61.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171035214.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.697 kcal (2) G-P(sol) polarization free energy of solvation -65.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds