Wall clock time and date at job start Tue Mar 31 2020 14:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99745 * 8 6 4 10 10 H 1.48503 * 109.46926 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47302 * 299.99567 * 8 6 4 12 12 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 13 13 C 1.46505 * 120.00155 * 59.99832 * 12 2 1 14 14 S 1.65599 * 120.00129 * 239.99955 * 12 2 1 15 15 O 1.42095 * 106.40444 * 203.53750 * 14 12 2 16 16 O 1.42097 * 106.40082 * 336.46142 * 14 12 2 17 17 C 1.76208 * 107.21833 * 89.99991 * 14 12 2 18 18 C 1.38387 * 119.83753 * 89.99973 * 17 14 12 19 19 C 1.38494 * 120.21366 * 179.97438 * 18 17 14 20 20 C 1.37540 * 119.94948 * 0.02562 * 19 18 17 21 21 C 1.39752 * 120.30443 * 359.97438 * 20 19 18 22 22 C 1.37950 * 119.83834 * 269.72685 * 17 14 12 23 23 C 1.47420 * 108.04084 * 179.97438 * 21 20 19 24 24 O 1.21469 * 124.89668 * 179.97438 * 23 21 20 25 25 O 1.34349 * 110.21470 * 0.02562 * 23 21 20 26 26 C 1.45403 * 109.00401 * 0.02562 * 25 23 21 27 27 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 30 30 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.46748 * 89.99662 * 13 12 2 32 32 H 1.08997 * 109.47257 * 210.00179 * 13 12 2 33 33 H 1.09002 * 109.46769 * 330.00037 * 13 12 2 34 34 H 1.07994 * 119.89840 * 359.97438 * 18 17 14 35 35 H 1.08002 * 120.02332 * 180.02562 * 19 18 17 36 36 H 1.08003 * 120.09939 * 0.02562 * 22 17 14 37 37 H 1.09000 * 110.06084 * 240.76158 * 26 25 23 38 38 H 1.09002 * 110.06539 * 119.23617 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9704 0.1142 2.2863 15 8 3.7118 -0.8789 2.9815 16 8 3.5794 1.1829 1.5749 17 6 1.8960 0.8535 3.4711 18 6 1.5398 0.1522 4.6097 19 6 0.6963 0.7260 5.5463 20 6 0.2100 1.9968 5.3452 21 6 0.5634 2.7138 4.1989 22 6 1.4187 2.1308 3.2620 23 6 -0.1028 4.0276 4.2586 24 8 -0.0049 4.8954 3.4145 25 8 -0.8331 4.1271 5.3819 26 6 -0.7030 2.8943 6.1420 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.7083 1.1609 -3.4845 31 1 2.4157 -2.7377 0.9717 32 1 1.6237 -2.2852 2.5002 33 1 0.6904 -2.3002 0.9847 34 1 1.9207 -0.8458 4.7684 35 1 0.4205 0.1761 6.4340 36 1 1.7023 2.6764 2.3741 37 1 -1.6789 2.4234 6.2604 38 1 -0.2661 3.1016 7.1188 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171709522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:26 Heat of formation + Delta-G solvation = -106.085848 kcal Electronic energy + Delta-G solvation = -25907.601911 eV Core-core repulsion = 22036.256542 eV Total energy + Delta-G solvation = -3871.345369 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.82247 -38.62969 -37.52242 -36.88094 -36.28811 -35.41232 -32.65089 -32.41158 -31.55143 -29.17827 -27.74426 -25.71520 -25.19009 -24.78382 -22.82476 -21.20472 -20.81533 -18.95001 -17.80745 -17.41555 -17.10152 -16.93433 -16.83969 -16.37411 -15.45899 -15.22347 -15.06521 -14.53156 -14.24788 -13.99183 -13.97991 -13.61833 -13.33914 -13.22020 -12.87024 -12.61810 -12.22013 -12.06957 -11.85757 -11.61391 -11.43815 -11.32154 -11.30157 -11.01571 -10.90111 -10.81311 -10.53336 -10.48217 -10.33511 -10.05505 -9.59656 -9.47470 -9.33102 -8.48808 -8.08779 -6.10022 -4.17633 0.10697 0.60638 0.82605 2.13523 2.73082 3.10477 3.29309 3.34200 3.34431 3.36948 3.56801 3.69056 4.14162 4.27540 4.37872 4.56055 4.65570 4.76064 4.81264 5.02346 5.17024 5.21281 5.42648 5.46134 5.57472 5.63723 5.77255 6.03426 6.19759 6.24730 6.38960 6.52446 6.69050 6.72428 6.93523 7.23598 7.32222 7.55822 7.72702 7.98413 8.21107 8.84083 9.48464 10.95633 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.016466 B = 0.004316 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.096309 B = 6486.637251 C = 7408.325696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.265 3.735 3 H 0.062 0.938 4 C -0.522 4.522 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.976 5.976 13 C 0.106 3.894 14 S 2.681 3.319 15 O -0.968 6.968 16 O -0.944 6.944 17 C -0.680 4.680 18 C 0.017 3.983 19 C -0.121 4.121 20 C -0.061 4.061 21 C -0.216 4.216 22 C 0.071 3.929 23 C 0.523 3.477 24 O -0.440 6.440 25 O -0.319 6.319 26 C 0.089 3.911 27 H 0.095 0.905 28 H 0.035 0.965 29 H 0.009 0.991 30 H 0.265 0.735 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.153 0.847 35 H 0.144 0.856 36 H 0.157 0.843 37 H 0.122 0.878 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 -2.076 18.578 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.163 3.837 3 H 0.080 0.920 4 C -0.562 4.562 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.817 5.817 13 C -0.040 4.040 14 S 2.768 3.232 15 O -0.958 6.958 16 O -0.934 6.934 17 C -0.762 4.762 18 C -0.002 4.002 19 C -0.140 4.140 20 C -0.062 4.062 21 C -0.219 4.219 22 C 0.051 3.949 23 C 0.365 3.635 24 O -0.324 6.324 25 O -0.235 6.235 26 C 0.014 3.986 27 H 0.114 0.886 28 H 0.054 0.946 29 H 0.028 0.972 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.171 0.829 35 H 0.162 0.838 36 H 0.174 0.826 37 H 0.140 0.860 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.499 -1.270 18.136 18.514 hybrid contribution -0.452 -0.403 -0.490 0.779 sum -3.951 -1.673 17.647 18.161 Atomic orbital electron populations 1.22155 0.98191 0.99876 1.00780 1.18858 0.91378 0.93235 0.80251 0.92033 1.21236 1.31995 1.13162 0.89762 0.91805 1.24910 0.94887 0.94972 0.99020 1.69842 1.36208 1.22566 1.24076 0.86533 0.79389 0.79522 0.81826 1.20223 1.21197 1.20078 1.57457 1.70376 1.19573 1.34328 1.21236 1.02170 0.81600 0.98962 1.02493 0.74203 0.73680 0.72822 1.93524 1.68133 1.59013 1.75106 1.93605 1.73020 1.55900 1.70854 1.31811 1.21890 1.05852 1.16649 1.21240 0.90138 0.98940 0.89887 1.20364 0.99276 0.93388 1.00970 1.21085 0.95069 0.95042 0.94986 1.20883 1.04960 0.97044 0.98992 1.20703 0.86643 0.91332 0.96175 1.20393 0.76665 0.86254 0.80228 1.90939 1.59137 1.45166 1.37140 1.87260 1.64735 1.38052 1.33438 1.22502 1.00688 0.80914 0.94462 0.88604 0.94551 0.97209 0.92496 0.92678 0.93149 0.90646 0.82908 0.83828 0.82580 0.86000 0.86038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.95 37.16 0.33 -2.98 16 2 C 0.27 6.24 2.62 -69.08 -0.18 6.06 16 3 H 0.06 1.60 6.91 -51.93 -0.36 1.24 16 4 C -0.52 -13.59 8.37 -34.44 -0.29 -13.88 16 5 H 0.06 1.64 7.65 -52.49 -0.40 1.24 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.40 11.32 55.43 0.63 -23.77 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.98 -18.99 3.06 -115.85 -0.35 -19.35 16 13 C 0.11 1.71 9.53 59.85 0.57 2.29 16 14 S 2.68 49.13 5.64 -107.50 -0.61 48.52 16 15 O -0.97 -17.89 16.34 -57.17 -0.93 -18.82 16 16 O -0.94 -20.74 15.82 -57.17 -0.90 -21.65 16 17 C -0.68 -10.12 5.97 -39.63 -0.24 -10.36 16 18 C 0.02 0.19 9.52 -39.43 -0.38 -0.18 16 19 C -0.12 -1.06 10.03 -39.74 -0.40 -1.46 16 20 C -0.06 -0.61 6.38 -104.26 -0.67 -1.27 16 21 C -0.22 -3.00 6.27 -105.08 -0.66 -3.66 16 22 C 0.07 1.11 9.57 -39.17 -0.37 0.73 16 23 C 0.52 7.79 8.58 34.47 0.30 8.09 16 24 O -0.44 -8.15 18.04 -18.92 -0.34 -8.49 16 25 O -0.32 -3.74 11.13 -39.20 -0.44 -4.18 16 26 C 0.09 0.62 7.93 36.05 0.29 0.90 16 27 H 0.10 2.37 6.07 -51.93 -0.32 2.05 16 28 H 0.04 0.74 6.66 -51.93 -0.35 0.40 16 29 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.63 7.79 -51.93 -0.40 0.23 16 33 H 0.07 1.18 6.43 -51.93 -0.33 0.85 16 34 H 0.15 1.41 7.60 -52.49 -0.40 1.01 16 35 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.16 2.62 7.60 -52.48 -0.40 2.22 16 37 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 336.88 15.07 5.08 5.08 Total: -1.00 -33.63 336.88 -8.89 -42.52 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -4.21 Total: -1.48 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -1.79 Total: -14.10 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.27 Total: -43.12 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -2.62 Total: -53.13 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 49.13 SS G_CDS: -0.61 Total: 48.52 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.63 -8.89 -42.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171709522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.568 kcal (2) G-P(sol) polarization free energy of solvation -33.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds