Wall clock time and date at job start Tue Mar 31 2020 14:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 13 13 C 1.46904 * 110.99742 * 58.95399 * 12 2 1 14 14 C 1.46898 * 111.00210 * 294.99946 * 12 2 1 15 15 C 1.53000 * 109.47099 * 190.00009 * 14 12 2 16 16 C 1.52999 * 109.46790 * 179.97438 * 15 14 12 17 17 C 1.50708 * 109.47003 * 180.02562 * 16 15 14 18 18 C 1.38241 * 120.00464 * 100.00187 * 17 16 15 19 19 C 1.38210 * 120.00869 * 179.97438 * 18 17 16 20 20 C 1.38267 * 120.02212 * 0.02562 * 19 18 17 21 21 C 1.38190 * 120.00811 * 359.97438 * 20 19 18 22 22 C 1.38304 * 120.00273 * 279.72800 * 17 16 15 23 23 Br 1.89099 * 120.01293 * 0.02562 * 22 17 16 24 24 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47312 * 60.00096 * 13 12 2 29 29 H 1.09002 * 109.46704 * 179.97438 * 13 12 2 30 30 H 1.08998 * 109.47187 * 299.99696 * 13 12 2 31 31 H 1.08999 * 109.47091 * 309.99733 * 14 12 2 32 32 H 1.08997 * 109.47084 * 69.99701 * 14 12 2 33 33 H 1.08995 * 109.47273 * 299.99471 * 15 14 12 34 34 H 1.08998 * 109.46973 * 60.00199 * 15 14 12 35 35 H 1.08997 * 109.47714 * 300.00297 * 16 15 14 36 36 H 1.08999 * 109.47449 * 60.00541 * 16 15 14 37 37 H 1.08005 * 119.99491 * 0.02562 * 18 17 16 38 38 H 1.08001 * 119.99149 * 180.02562 * 19 18 17 39 39 H 1.08004 * 119.99470 * 179.97438 * 20 19 18 40 40 H 1.08004 * 120.00217 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1675 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8162 12 7 2.0197 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6488 0.0391 2.4181 15 6 2.3790 -0.5663 3.6185 16 6 1.9931 0.1961 4.8876 17 6 2.7129 -0.3998 6.0701 18 6 3.8513 0.2086 6.5648 19 6 4.5111 -0.3375 7.6496 20 6 4.0333 -1.4929 8.2400 21 6 2.8953 -2.1017 7.7461 22 6 2.2312 -1.5523 6.6639 23 35 0.6700 -2.3811 5.9920 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7093 1.1618 -3.4844 28 1 1.8763 -2.6151 0.3647 29 1 1.9061 -2.5658 2.1435 30 1 0.4385 -2.0742 1.2639 31 1 1.9299 1.0869 2.3125 32 1 0.5724 -0.0345 2.5726 33 1 2.0979 -1.6141 3.7242 34 1 3.4555 -0.4926 3.4640 35 1 2.2744 1.2438 4.7819 36 1 0.9167 0.1228 5.0425 37 1 4.2248 1.1113 6.1042 38 1 5.4003 0.1382 8.0361 39 1 4.5494 -1.9195 9.0874 40 1 2.5218 -3.0039 8.2077 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182003396.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:19 Heat of formation + Delta-G solvation = 21.935952 kcal Electronic energy + Delta-G solvation = -19436.539235 eV Core-core repulsion = 16490.107010 eV Total energy + Delta-G solvation = -2946.432225 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.63563 -37.40222 -34.55046 -32.67580 -32.27777 -30.48712 -29.34833 -28.25351 -26.27832 -25.10749 -24.15371 -22.66427 -21.61857 -20.60854 -19.00718 -16.87056 -16.09543 -15.93922 -15.32764 -15.06203 -14.53304 -14.20829 -13.92170 -13.66949 -13.40529 -13.09306 -12.93291 -12.43050 -11.97091 -11.70502 -11.48535 -11.38629 -11.19041 -11.09977 -10.95391 -10.91301 -10.68424 -10.52119 -10.49621 -10.13772 -10.01200 -9.96972 -9.64252 -9.04508 -8.82280 -8.73488 -8.35189 -7.04752 -5.97092 -4.00293 0.91952 1.09589 1.56065 3.32339 3.40054 3.42194 3.45033 4.44169 4.53315 4.60886 4.73967 5.03749 5.08196 5.18180 5.31706 5.35010 5.42192 5.61454 5.68613 5.82238 5.87379 6.00681 6.06958 6.18051 6.21734 6.27937 6.34100 6.47658 6.61375 6.63886 6.69539 6.74935 6.89362 6.98857 7.19393 7.56644 7.77888 7.89624 8.19137 8.45447 8.67918 9.06436 9.64670 11.10166 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.023136 B = 0.003117 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.965986 B = 8980.644779 C = 9500.631712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.210 3.790 3 H 0.038 0.962 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.535 5.535 13 C 0.034 3.966 14 C 0.058 3.942 15 C -0.109 4.109 16 C -0.091 4.091 17 C -0.043 4.043 18 C -0.113 4.113 19 C -0.103 4.103 20 C -0.126 4.126 21 C -0.091 4.091 22 C -0.092 4.092 23 Br -0.046 7.046 24 H 0.007 0.993 25 H 0.087 0.913 26 H 0.029 0.971 27 H 0.259 0.741 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.016 0.984 31 H 0.063 0.937 32 H 0.025 0.975 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.391 -3.948 23.493 23.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.104 3.896 3 H 0.056 0.944 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.259 5.259 13 C -0.114 4.114 14 C -0.071 4.071 15 C -0.147 4.147 16 C -0.129 4.129 17 C -0.044 4.044 18 C -0.132 4.132 19 C -0.122 4.122 20 C -0.145 4.145 21 C -0.111 4.111 22 C -0.171 4.171 23 Br 0.040 6.960 24 H 0.026 0.974 25 H 0.105 0.895 26 H 0.048 0.952 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.239 -4.166 23.055 23.535 hybrid contribution -0.295 -0.207 -0.657 0.750 sum 1.944 -4.373 22.398 22.904 Atomic orbital electron populations 1.22391 1.00987 0.99283 1.00423 1.19305 0.89677 0.94503 0.86156 0.94429 1.21187 1.30285 1.12376 0.89733 0.91914 1.24934 0.95305 0.95162 0.98992 1.69900 1.37288 1.23139 1.23185 0.86485 0.78514 0.79685 0.82989 1.19751 1.21237 1.21089 1.62324 1.59483 1.01943 1.02132 1.22243 0.97025 0.91407 1.00773 1.21976 0.96600 0.97993 0.90532 1.21600 1.01250 0.99884 0.92000 1.20815 1.00179 0.99992 0.91921 1.19940 0.95230 0.93232 0.96044 1.21131 0.94819 1.00523 0.96708 1.21280 0.99491 0.95742 0.95672 1.21114 0.96451 0.96328 1.00594 1.21094 0.95299 0.99705 0.94963 1.21789 0.96620 0.98572 1.00139 1.96733 1.32842 1.79594 1.86860 0.97399 0.89471 0.95165 0.93144 0.91155 0.93850 0.96548 0.91847 0.95709 0.91419 0.91442 0.90500 0.90238 0.85033 0.85521 0.85426 0.85249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 8.28 37.16 0.31 -3.93 16 2 C 0.21 5.36 2.34 -68.86 -0.16 5.20 16 3 H 0.04 1.05 8.03 -51.93 -0.42 0.64 16 4 C -0.50 -13.78 7.94 -34.44 -0.27 -14.06 16 5 H 0.06 1.75 6.75 -52.48 -0.35 1.40 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.77 11.32 55.43 0.63 -25.14 16 8 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 N -0.54 -11.72 4.74 -236.28 -1.12 -12.84 16 13 C 0.03 0.69 8.70 60.07 0.52 1.22 16 14 C 0.06 1.05 4.40 -3.83 -0.02 1.04 16 15 C -0.11 -1.65 5.05 -26.73 -0.14 -1.78 16 16 C -0.09 -1.14 4.76 -27.88 -0.13 -1.27 16 17 C -0.04 -0.50 5.14 -104.59 -0.54 -1.04 16 18 C -0.11 -1.14 9.67 -39.59 -0.38 -1.53 16 19 C -0.10 -0.90 10.05 -39.58 -0.40 -1.29 16 20 C -0.13 -1.07 10.05 -39.59 -0.40 -1.47 16 21 C -0.09 -0.89 9.79 -39.56 -0.39 -1.28 16 22 C -0.09 -1.07 6.22 -39.52 -0.25 -1.31 16 23 Br -0.05 -0.55 30.88 -68.01 -2.10 -2.65 16 24 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 25 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 26 H 0.03 0.72 6.39 -51.93 -0.33 0.39 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 28 H 0.07 1.53 6.53 -51.93 -0.34 1.19 16 29 H 0.04 0.78 6.30 -51.93 -0.33 0.45 16 30 H 0.02 0.33 6.28 -51.93 -0.33 0.01 16 31 H 0.06 1.16 8.00 -51.93 -0.42 0.75 16 32 H 0.02 0.46 6.94 -51.93 -0.36 0.10 16 33 H 0.07 1.05 5.35 -51.93 -0.28 0.77 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 0.88 8.00 -51.93 -0.42 0.46 16 36 H 0.08 1.01 7.13 -51.93 -0.37 0.64 16 37 H 0.13 1.14 8.04 -52.48 -0.42 0.71 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 40 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 332.65 15.07 5.01 5.01 Total: -1.00 -29.19 332.65 -10.78 -39.97 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.85 Total: -0.88 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -2.33 Total: -20.02 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: -0.49 Total: -37.98 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.10 Total: -2.65 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.19 -10.78 -39.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182003396.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.908 kcal (2) G-P(sol) polarization free energy of solvation -29.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds