Wall clock time and date at job start Tue Mar 31 2020 13:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86798 * 120.00218 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00315 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00065 * 3 2 1 6 6 H 1.48498 * 109.47210 * 149.99776 * 3 2 1 7 7 C 1.40135 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00284 * 180.02562 * 7 2 1 9 9 C 1.41788 * 120.00068 * 359.72948 * 7 2 1 10 10 O 1.21784 * 119.99818 * 359.97438 * 9 7 2 11 11 N 1.34774 * 120.00182 * 180.02562 * 9 7 2 12 12 C 1.40091 * 120.00106 * 179.97438 * 11 9 7 13 13 C 1.40491 * 126.13039 * 0.02562 * 12 11 9 14 14 N 1.30791 * 108.35424 * 179.97438 * 13 12 11 15 15 N 1.40046 * 108.47746 * 0.02562 * 14 13 12 16 16 C 1.40129 * 126.03090 * 180.02562 * 15 14 13 17 17 C 1.38849 * 120.07039 * 179.70102 * 16 15 14 18 18 C 1.38116 * 119.92973 * 179.69603 * 17 16 15 19 19 C 1.38285 * 120.07112 * 0.60105 * 18 17 16 20 20 C 1.50694 * 119.93263 * 179.70086 * 19 18 17 21 21 F 1.39902 * 109.46982 * 269.97263 * 20 19 18 22 22 F 1.39898 * 109.47537 * 29.97350 * 20 19 18 23 23 F 1.39904 * 109.46993 * 149.97940 * 20 19 18 24 24 C 1.38283 * 120.13388 * 359.67328 * 19 18 17 25 25 C 1.38114 * 120.06865 * 0.02562 * 24 19 18 26 26 C 1.35961 * 107.94259 * 359.73267 * 15 14 13 27 27 H 0.96990 * 120.00337 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99529 * 359.97438 * 11 9 7 29 29 H 1.08008 * 125.82027 * 359.97438 * 13 12 11 30 30 H 1.08005 * 120.03754 * 359.97438 * 17 16 15 31 31 H 1.08007 * 119.96792 * 180.30007 * 18 17 16 32 32 H 1.07997 * 119.97014 * 180.02562 * 24 19 18 33 33 H 1.08001 * 120.04063 * 179.97438 * 25 24 19 34 34 H 1.07997 * 126.26273 * 180.26341 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4878 2.0464 -1.4000 5 1 1.4377 2.6526 0.7001 6 1 3.5379 1.4401 0.7001 7 6 2.0070 -1.2136 -0.0005 8 1 3.0870 -1.2136 -0.0001 9 6 1.2981 -2.4415 0.0047 10 8 0.0803 -2.4415 0.0102 11 7 1.9720 -3.6087 0.0047 12 6 1.2715 -4.8219 0.0104 13 6 -0.1253 -4.9720 0.0160 14 7 -0.4022 -6.2502 0.0198 15 7 0.8019 -6.9653 0.0174 16 6 0.9321 -8.3605 0.0196 17 6 2.1931 -8.9416 0.0105 18 6 2.3181 -10.3171 0.0190 19 6 1.1890 -11.1154 0.0240 20 6 1.3290 -12.6158 0.0265 21 9 1.3676 -13.0827 -1.2917 22 9 2.5119 -12.9728 0.6825 23 9 0.2372 -13.1849 0.6909 24 6 -0.0683 -10.5397 0.0273 25 6 -0.1998 -9.1648 0.0251 26 6 1.8224 -6.0669 0.0060 27 1 -0.4850 0.8399 -0.0004 28 1 2.9419 -3.6087 0.0007 29 1 -0.8474 -4.1687 0.0170 30 1 3.0754 -8.3187 0.0013 31 1 3.2987 -10.7697 0.0168 32 1 -0.9483 -11.1657 0.0317 33 1 -1.1820 -8.7157 0.0273 34 1 2.8773 -6.2985 -0.0026 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185317900.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:48 Heat of formation + Delta-G solvation = -94.932313 kcal Electronic energy + Delta-G solvation = -25570.744277 eV Core-core repulsion = 21054.874622 eV Total energy + Delta-G solvation = -4515.869656 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.15277 -48.66944 -48.61739 -42.56446 -40.39328 -39.36506 -35.61307 -34.61158 -34.28651 -32.42189 -31.22159 -30.31287 -28.37158 -26.58949 -24.39897 -23.88173 -22.92790 -21.89809 -21.10511 -19.62573 -19.46864 -19.34301 -19.23411 -18.78953 -17.48559 -16.86467 -16.43344 -16.41008 -15.87751 -15.79411 -15.49922 -15.41932 -15.17983 -15.07861 -14.88989 -14.87155 -14.77490 -14.52637 -14.48552 -14.42946 -13.88161 -13.73956 -13.16355 -12.81327 -12.72140 -12.65377 -12.47288 -12.00934 -11.84925 -11.83564 -11.13493 -10.89917 -10.24453 -9.84136 -9.76043 -8.43467 -8.35735 -6.95351 -0.54501 0.13010 0.93484 1.28676 1.41184 1.43639 1.59536 1.66315 1.73808 2.23687 2.41290 2.52242 2.72126 2.95632 3.01584 3.42904 3.50201 3.68356 3.71272 3.86351 3.95558 4.06468 4.25971 4.41991 4.53187 4.57645 4.81998 4.89545 5.03217 5.12676 5.25933 5.41552 5.44587 5.90793 6.08749 6.18496 6.34414 6.54465 6.78245 7.46679 8.42061 8.60387 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.046222 B = 0.002085 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.623431 B =13427.921828 C =13859.049297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.032 3.968 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.247 1.247 7 C -0.561 4.561 8 H 0.094 0.906 9 C 0.533 3.467 10 O -0.615 6.615 11 N -0.666 5.666 12 C 0.039 3.961 13 C 0.044 3.956 14 N -0.304 5.304 15 N -0.334 5.334 16 C 0.193 3.807 17 C -0.144 4.144 18 C -0.031 4.031 19 C -0.213 4.213 20 C 0.518 3.482 21 F -0.180 7.180 22 F -0.176 7.176 23 F -0.180 7.180 24 C -0.038 4.038 25 C -0.146 4.146 26 C -0.010 4.010 27 H 0.278 0.722 28 H 0.410 0.590 29 H 0.185 0.815 30 H 0.168 0.832 31 H 0.172 0.828 32 H 0.159 0.841 33 H 0.136 0.864 34 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.427 -21.540 0.033 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.170 1.170 7 C -0.597 4.597 8 H 0.112 0.888 9 C 0.342 3.658 10 O -0.503 6.503 11 N -0.311 5.311 12 C -0.067 4.067 13 C -0.144 4.144 14 N -0.124 5.124 15 N -0.113 5.113 16 C 0.099 3.901 17 C -0.165 4.165 18 C -0.050 4.050 19 C -0.215 4.215 20 C 0.464 3.536 21 F -0.162 7.162 22 F -0.157 7.157 23 F -0.161 7.161 24 C -0.057 4.057 25 C -0.166 4.166 26 C -0.153 4.153 27 H 0.088 0.912 28 H 0.246 0.754 29 H 0.202 0.798 30 H 0.185 0.815 31 H 0.189 0.811 32 H 0.176 0.824 33 H 0.154 0.846 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 6.519 -22.263 0.049 23.198 hybrid contribution 0.771 1.373 -0.017 1.575 sum 7.291 -20.890 0.033 22.126 Atomic orbital electron populations 1.70150 1.09621 1.29432 1.33707 1.26983 0.95468 1.05075 0.91059 0.84985 0.78871 0.74847 0.79456 1.18631 1.19961 1.16987 1.20527 0.95613 0.90306 1.53209 0.88840 1.17388 0.87207 0.83571 0.77659 1.90485 1.15604 1.86787 1.57396 1.43054 1.09440 1.02174 1.76464 1.18297 0.91833 0.87808 1.08767 1.24664 0.96900 0.93409 0.99420 1.77258 1.05450 1.04616 1.25031 1.45523 1.04247 1.03976 1.57573 1.18108 0.96279 0.78039 0.97715 1.21061 0.95424 0.95482 1.04491 1.21012 0.99053 0.91905 0.93008 1.20050 0.96602 0.90995 1.13900 1.18124 0.73603 0.88304 0.73560 1.93230 1.96116 1.90405 1.36424 1.93193 1.47976 1.93292 1.81281 1.93192 1.54999 1.86976 1.80977 1.20910 0.97212 0.93793 0.93744 1.20889 0.98418 0.93156 1.04182 1.22351 0.95980 0.86199 1.10797 0.91160 0.75388 0.79847 0.81478 0.81062 0.82375 0.84604 0.75950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -46.17 11.73 21.85 0.26 -45.91 16 2 C 0.03 1.69 5.50 85.33 0.47 2.16 16 3 Si 1.00 38.05 29.56 68.60 2.03 40.08 16 4 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 6 H -0.25 -8.66 7.11 99.48 0.71 -7.95 16 7 C -0.56 -29.45 9.31 23.61 0.22 -29.23 16 8 H 0.09 4.29 7.85 -2.91 -0.02 4.26 16 9 C 0.53 28.99 7.54 85.12 0.64 29.63 16 10 O -0.62 -38.33 12.01 -4.62 -0.06 -38.39 16 11 N -0.67 -28.40 5.44 -311.98 -1.70 -30.10 16 12 C 0.04 1.56 6.90 37.88 0.26 1.83 16 13 C 0.04 2.00 10.83 85.40 0.93 2.92 16 14 N -0.30 -12.00 11.85 -56.63 -0.67 -12.67 16 15 N -0.33 -10.56 3.82 -186.64 -0.71 -11.28 16 16 C 0.19 4.73 6.69 38.11 0.25 4.98 16 17 C -0.14 -2.42 9.46 22.39 0.21 -2.21 16 18 C -0.03 -0.44 9.39 22.25 0.21 -0.23 16 19 C -0.21 -3.48 5.46 -19.84 -0.11 -3.59 16 20 C 0.52 8.27 3.36 71.23 0.24 8.51 16 21 F -0.18 -3.12 17.30 44.97 0.78 -2.34 16 22 F -0.18 -2.75 16.46 44.97 0.74 -2.01 16 23 F -0.18 -3.07 16.46 44.97 0.74 -2.33 16 24 C -0.04 -0.68 9.39 22.25 0.21 -0.47 16 25 C -0.15 -3.37 9.66 22.39 0.22 -3.15 16 26 C -0.01 -0.31 10.87 83.57 0.91 0.60 16 27 H 0.28 14.51 8.29 -92.72 -0.77 13.74 16 28 H 0.41 14.04 8.78 -92.71 -0.81 13.23 16 29 H 0.18 9.54 5.90 -2.91 -0.02 9.52 16 30 H 0.17 1.90 6.75 -2.91 -0.02 1.88 16 31 H 0.17 1.42 7.60 -2.91 -0.02 1.40 16 32 H 0.16 2.18 7.60 -2.91 -0.02 2.16 16 33 H 0.14 3.44 7.70 -2.91 -0.02 3.42 16 34 H 0.22 4.12 7.06 -2.91 -0.02 4.10 16 Total: -1.00 -72.25 317.82 6.46 -65.79 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.39 Total: 27.39 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 4.66 Total: 11.76 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -2.82 Total: -99.96 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -0.06 Total: -38.39 kcal Atomic # 9 Polarization: -8.93 SS G_CDS: 2.26 Total: -6.68 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -72.25 6.46 -65.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185317900.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.141 kcal (2) G-P(sol) polarization free energy of solvation -72.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds