Wall clock time and date at job start Tue Mar 31 2020 14:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47096 * 2 1 4 4 H 1.08999 * 109.46984 * 305.56669 * 3 2 1 5 5 C 1.50699 * 109.46834 * 185.56802 * 3 2 1 6 6 H 1.07999 * 120.00028 * 244.99504 * 5 3 2 7 7 C 1.37873 * 120.00194 * 64.99860 * 5 3 2 8 8 N 1.31519 * 120.00189 * 9.03451 * 7 5 3 9 9 Si 1.86800 * 120.00224 * 189.03942 * 7 5 3 10 10 H 1.48496 * 109.47377 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.47054 * 299.99863 * 9 7 5 12 12 H 1.48503 * 109.47064 * 59.99393 * 9 7 5 13 13 N 1.46503 * 109.47245 * 65.56660 * 3 2 1 14 14 S 1.65598 * 119.99920 * 215.09965 * 13 3 2 15 15 O 1.42100 * 106.40096 * 179.37337 * 14 13 3 16 16 O 1.42095 * 106.40351 * 312.29328 * 14 13 3 17 17 C 1.76196 * 107.21859 * 65.83333 * 14 13 3 18 18 C 1.38398 * 119.83975 * 93.67393 * 17 14 13 19 19 C 1.38488 * 120.21897 * 179.97438 * 18 17 14 20 20 C 1.37542 * 119.94685 * 0.02562 * 19 18 17 21 21 C 1.39751 * 120.30476 * 359.97438 * 20 19 18 22 22 C 1.37943 * 119.83983 * 273.40316 * 17 14 13 23 23 C 1.47426 * 108.03897 * 179.97438 * 21 20 19 24 24 O 1.21476 * 124.89146 * 179.97438 * 23 21 20 25 25 O 1.34346 * 110.20937 * 0.02562 * 23 21 20 26 26 C 1.45393 * 109.01040 * 0.02562 * 25 23 21 27 27 H 1.09004 * 109.47376 * 184.56089 * 1 2 3 28 28 H 1.09002 * 109.47202 * 304.56880 * 1 2 3 29 29 H 1.09006 * 109.46565 * 64.56679 * 1 2 3 30 30 H 1.08997 * 109.46900 * 239.99671 * 2 1 3 31 31 H 1.08999 * 109.46865 * 119.99661 * 2 1 3 32 32 H 0.97000 * 119.99380 * 356.98207 * 8 7 5 33 33 H 0.96997 * 119.99586 * 35.10653 * 13 3 2 34 34 H 1.08004 * 119.88869 * 359.97438 * 18 17 14 35 35 H 1.08002 * 120.02496 * 180.02562 * 19 18 17 36 36 H 1.07995 * 120.10314 * 0.02562 * 22 17 14 37 37 H 1.08997 * 110.06492 * 240.76012 * 26 25 23 38 38 H 1.09003 * 110.06626 * 119.23737 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5975 1.9842 -0.8359 5 6 3.5407 1.4446 -0.1379 6 1 4.1565 1.8131 0.6692 7 6 4.1274 0.9762 -1.2943 8 7 3.3836 0.6948 -2.3417 9 14 5.9789 0.7413 -1.3733 10 1 6.3563 0.2309 -2.7158 11 1 6.6537 2.0415 -1.1298 12 1 6.3985 -0.2359 -0.3367 13 7 1.6641 2.0933 1.2575 14 16 1.2651 3.7005 1.2710 15 8 0.9400 4.0219 2.6165 16 8 2.2783 4.3717 0.5347 17 6 -0.2228 3.8763 0.3440 18 6 -1.4452 3.8531 0.9926 19 6 -2.6196 3.9911 0.2718 20 6 -2.5724 4.1513 -1.0935 21 6 -1.3435 4.1761 -1.7585 22 6 -0.1636 4.0419 -1.0242 23 6 -1.6068 4.3581 -3.1976 24 8 -0.7515 4.4228 -4.0578 25 8 -2.9289 4.4431 -3.4204 26 6 -3.6314 4.3248 -2.1529 27 1 -0.3634 -1.0244 0.0817 28 1 -0.3634 0.5831 0.8462 29 1 -0.3633 0.4414 -0.9281 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.4185 0.7749 -2.2868 33 1 1.6491 1.5829 2.0822 34 1 -1.4833 3.7270 2.0646 35 1 -3.5717 3.9730 0.7812 36 1 0.7923 4.0635 -1.5263 37 1 -4.2887 3.4555 -2.1693 38 1 -4.2100 5.2283 -1.9603 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186436005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:42 Heat of formation + Delta-G solvation = -148.970363 kcal Electronic energy + Delta-G solvation = -26196.544062 eV Core-core repulsion = 22323.339081 eV Total energy + Delta-G solvation = -3873.204981 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.79487 -39.69420 -38.66880 -38.47724 -37.99143 -36.98176 -34.25602 -33.38739 -32.53264 -32.44396 -28.56358 -28.11162 -25.83887 -25.02927 -23.84398 -22.33969 -22.05814 -20.73640 -19.54421 -19.06979 -18.48127 -18.41284 -17.98999 -17.89214 -17.00354 -16.30941 -16.23326 -15.77980 -15.67944 -15.18122 -14.97782 -14.94065 -14.90609 -14.86662 -14.22861 -14.07208 -13.58042 -13.41338 -13.35544 -13.23618 -13.09187 -13.01297 -12.62278 -12.44005 -12.22199 -12.13900 -11.95260 -11.81159 -11.72634 -11.64692 -11.43733 -10.59789 -10.48211 -10.38677 -9.96193 -8.56642 -6.30393 -0.88137 -0.65107 -0.38598 1.09444 1.53665 1.60563 1.79542 1.81570 1.96271 2.25282 2.48496 2.58053 2.68865 2.85016 3.17947 3.30929 3.47562 3.81878 4.01226 4.06423 4.24804 4.26443 4.33229 4.40962 4.45094 4.50100 4.59125 4.63526 4.71091 4.82911 4.90808 5.14196 5.15434 5.29941 5.46455 5.48526 5.52794 6.00364 6.12440 6.18244 6.38554 6.62270 7.43885 8.79287 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.012935 B = 0.005207 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.176492 B = 5375.991466 C = 6315.323238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.273 3.727 4 H 0.011 0.989 5 C -0.617 4.617 6 H 0.047 0.953 7 C -0.022 4.022 8 N -0.931 5.931 9 Si 1.103 2.897 10 H -0.285 1.285 11 H -0.284 1.284 12 H -0.263 1.263 13 N -1.090 6.090 14 S 2.701 3.299 15 O -0.976 6.976 16 O -0.993 6.993 17 C -0.686 4.686 18 C 0.023 3.977 19 C -0.097 4.097 20 C -0.032 4.032 21 C -0.245 4.245 22 C 0.046 3.954 23 C 0.521 3.479 24 O -0.500 6.500 25 O -0.323 6.323 26 C 0.084 3.916 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.261 0.739 33 H 0.421 0.579 34 H 0.184 0.816 35 H 0.207 0.793 36 H 0.112 0.888 37 H 0.166 0.834 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.743 3.551 8.750 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C 0.167 3.833 4 H 0.029 0.971 5 C -0.656 4.656 6 H 0.066 0.934 7 C -0.222 4.222 8 N -0.568 5.568 9 Si 0.926 3.074 10 H -0.210 1.210 11 H -0.210 1.210 12 H -0.188 1.188 13 N -0.851 5.851 14 S 2.792 3.208 15 O -0.966 6.966 16 O -0.983 6.983 17 C -0.774 4.774 18 C 0.004 3.996 19 C -0.114 4.114 20 C -0.033 4.033 21 C -0.248 4.248 22 C 0.026 3.974 23 C 0.365 3.635 24 O -0.389 6.389 25 O -0.238 6.238 26 C 0.012 3.988 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.257 0.743 34 H 0.201 0.799 35 H 0.224 0.776 36 H 0.130 0.870 37 H 0.184 0.816 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -18.781 3.939 7.383 20.561 hybrid contribution -0.820 0.120 0.363 0.905 sum -19.601 4.058 7.746 21.463 Atomic orbital electron populations 1.21767 0.95027 1.02027 1.01118 1.21771 0.95693 0.97288 1.01509 1.18389 0.93782 0.91042 0.80110 0.97089 1.22616 0.93140 1.45405 1.04469 0.93448 1.26938 1.10297 0.93394 0.91591 1.70943 1.07130 1.48335 1.30372 0.83116 0.70534 0.77246 0.76520 1.21004 1.20980 1.18792 1.55103 1.83518 1.29340 1.17139 1.01340 0.73836 0.72898 0.72746 1.93519 1.85485 1.83371 1.34214 1.93580 1.56654 1.73792 1.74303 1.30901 1.21140 1.19568 1.05818 1.21741 0.89441 0.86221 1.02214 1.20964 1.00755 0.99531 0.90200 1.21582 0.93996 0.91338 0.96369 1.20840 0.96585 1.12718 0.94640 1.20450 0.97881 0.86842 0.92252 1.20687 0.82289 0.72559 0.87979 1.90913 1.46933 1.47624 1.53383 1.87231 1.17871 1.83458 1.35208 1.23212 0.91476 1.09688 0.74439 0.91560 0.91231 0.94756 0.93446 0.91718 0.92833 0.74310 0.79921 0.77587 0.87024 0.81639 0.81324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 9.86 71.98 0.71 -3.70 16 2 C -0.12 -4.99 5.22 30.59 0.16 -4.83 16 3 C 0.27 12.61 1.77 44.24 0.08 12.69 16 4 H 0.01 0.58 6.36 -2.39 -0.02 0.56 16 5 C -0.62 -34.01 8.77 25.60 0.22 -33.79 16 6 H 0.05 2.66 7.83 -2.91 -0.02 2.64 16 7 C -0.02 -1.28 5.16 84.65 0.44 -0.84 16 8 N -0.93 -56.04 13.02 21.45 0.28 -55.76 16 9 Si 1.10 51.51 29.91 68.60 2.05 53.56 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 13 N -1.09 -40.70 4.86 -172.52 -0.84 -41.54 16 14 S 2.70 99.43 5.64 -56.49 -0.32 99.11 16 15 O -0.98 -34.02 17.18 -128.00 -2.20 -36.21 16 16 O -0.99 -47.71 17.10 -128.00 -2.19 -49.89 16 17 C -0.69 -20.62 5.88 22.24 0.13 -20.48 16 18 C 0.02 0.43 9.53 22.37 0.21 0.64 16 19 C -0.10 -1.13 10.03 22.16 0.22 -0.91 16 20 C -0.03 -0.53 6.38 -19.63 -0.13 -0.65 16 21 C -0.25 -7.17 6.27 -20.16 -0.13 -7.30 16 22 C 0.05 1.60 8.80 22.53 0.20 1.80 16 23 C 0.52 17.11 8.58 70.24 0.60 17.71 16 24 O -0.50 -21.69 18.04 19.60 0.35 -21.33 16 25 O -0.32 -7.40 11.13 -52.91 -0.59 -7.99 16 26 C 0.08 0.79 7.93 71.27 0.56 1.35 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 1.79 7.65 -2.39 -0.02 1.78 16 29 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.05 2.24 6.31 -2.39 -0.02 2.22 16 31 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.26 15.61 6.04 -92.71 -0.56 15.05 16 33 H 0.42 13.04 8.84 -96.75 -0.85 12.19 16 34 H 0.18 2.42 7.52 -2.91 -0.02 2.40 16 35 H 0.21 0.02 8.06 -2.91 -0.02 0.00 16 36 H 0.11 4.82 7.53 -2.91 -0.02 4.80 16 37 H 0.17 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.17 0.20 8.14 -2.39 -0.02 0.18 16 Total: -1.00 -86.63 339.22 0.31 -86.32 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.47 Total: 12.04 kcal Atomic # 6 Polarization: -41.59 SS G_CDS: 3.29 Total: -38.30 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -0.56 Total: -97.30 kcal Atomic # 8 Polarization: -110.81 SS G_CDS: -4.62 Total: -115.43 kcal Atomic # 14 Polarization: 51.51 SS G_CDS: 2.05 Total: 53.56 kcal Atomic # 16 Polarization: 99.43 SS G_CDS: -0.32 Total: 99.11 kcal Total: -86.63 0.31 -86.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186436005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.647 kcal (2) G-P(sol) polarization free energy of solvation -86.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds