Wall clock time and date at job start Tue Mar 31 2020 14:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46997 * 2 1 4 4 H 1.09001 * 109.47502 * 55.00061 * 3 2 1 5 5 C 1.50706 * 109.47238 * 174.99896 * 3 2 1 6 6 H 1.07995 * 120.00167 * 119.72028 * 5 3 2 7 7 C 1.37879 * 119.99394 * 299.99727 * 5 3 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47487 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47233 * 120.00158 * 9 7 5 12 12 H 1.48508 * 109.46883 * 239.99963 * 9 7 5 13 13 O 1.45200 * 109.46978 * 294.99673 * 3 2 1 14 14 C 1.34770 * 117.00074 * 90.00475 * 13 3 2 15 15 O 1.21519 * 120.00110 * 359.97438 * 14 13 3 16 16 C 1.47337 * 119.99805 * 180.02562 * 14 13 3 17 17 C 1.39912 * 120.07280 * 359.71845 * 16 14 13 18 18 C 1.36574 * 119.93389 * 179.76277 * 17 16 14 19 19 C 1.39343 * 120.06498 * 0.51944 * 18 17 16 20 20 S 1.76193 * 119.93056 * 179.71964 * 19 18 17 21 21 C 1.81402 * 102.99996 * 0.02562 * 20 19 18 22 22 C 1.39307 * 120.13756 * 359.73271 * 19 18 17 23 23 N 1.48023 * 119.96339 * 180.02562 * 22 19 18 24 24 O 1.21805 * 119.99859 * 179.97438 * 23 22 19 25 25 O 1.21795 * 120.00184 * 359.97416 * 23 22 19 26 26 C 1.36606 * 120.07188 * 0.02562 * 22 19 18 27 27 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47331 * 300.00296 * 1 2 3 29 29 H 1.09001 * 109.46791 * 60.00740 * 1 2 3 30 30 H 1.08993 * 109.47331 * 239.99704 * 2 1 3 31 31 H 1.09002 * 109.46801 * 119.99817 * 2 1 3 32 32 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 33 33 H 1.08003 * 120.03527 * 359.97438 * 17 16 14 34 34 H 1.07991 * 119.96892 * 180.23063 * 18 17 16 35 35 H 1.08998 * 109.46760 * 60.00460 * 21 20 19 36 36 H 1.09008 * 109.46932 * 180.02562 * 21 20 19 37 37 H 1.08993 * 109.46912 * 300.00041 * 21 20 19 38 38 H 1.07995 * 120.03591 * 180.02562 * 26 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1474 1.8849 -0.6544 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0048 0.8814 1.3820 10 1 6.5987 1.5463 0.1945 11 1 6.3988 1.6169 2.6104 12 1 6.4970 -0.5174 1.4632 13 8 1.6559 2.0916 -1.2407 14 6 0.4680 2.7280 -1.2561 15 8 -0.2280 2.7397 -0.2601 16 6 0.0127 3.4085 -2.4810 17 6 0.8150 3.4001 -3.6272 18 6 0.3880 4.0277 -4.7626 19 6 -0.8405 4.6852 -4.7769 20 16 -1.3845 5.5000 -6.2413 21 6 -0.0270 5.1963 -7.4056 22 6 -1.6392 4.6999 -3.6356 23 7 -2.9438 5.3990 -3.6553 24 8 -3.6429 5.4119 -2.6579 25 8 -3.3181 5.9615 -4.6686 26 6 -1.2199 4.0697 -2.4985 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8292 -0.0617 2.9496 33 1 1.7695 2.8949 -3.6153 34 1 1.0051 4.0184 -5.6487 35 1 0.0982 4.1226 -7.5455 36 1 -0.2582 5.6634 -8.3630 37 1 0.8946 5.6208 -7.0077 38 1 -1.8397 4.0811 -1.6142 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187967720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:50 Heat of formation + Delta-G solvation = -62.969678 kcal Electronic energy + Delta-G solvation = -24949.467815 eV Core-core repulsion = 21079.992103 eV Total energy + Delta-G solvation = -3869.475711 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.32376 -40.33364 -38.93891 -36.68939 -35.99079 -33.71439 -32.54869 -32.17591 -31.37920 -29.32226 -27.51194 -26.72484 -25.08664 -23.20839 -22.76648 -21.32569 -20.04489 -19.33102 -18.77723 -17.90170 -17.68453 -17.12539 -16.81998 -15.94903 -15.70688 -15.44191 -15.14770 -14.94457 -14.57228 -14.35436 -13.54512 -13.40683 -13.15584 -13.00823 -12.85430 -12.43919 -12.15623 -11.81167 -11.62155 -11.45771 -11.43341 -11.31329 -11.24998 -11.07410 -10.77212 -10.40339 -10.33813 -10.29531 -10.04938 -10.02985 -9.84591 -9.53371 -8.94958 -8.57440 -8.04247 -6.29461 -4.37515 -0.40372 0.20520 0.77637 1.15192 1.21875 1.82793 2.43076 3.15698 3.17883 3.25108 3.32251 3.41198 3.90440 4.21304 4.43490 4.49134 4.58942 4.60503 4.61876 4.86416 5.03092 5.05146 5.24494 5.34134 5.63804 5.78412 5.90955 6.12503 6.18961 6.24755 6.33671 6.72292 6.82777 7.03595 7.07037 7.48114 7.54014 7.60145 7.76993 8.01330 8.38232 8.72090 9.28129 10.77289 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019148 B = 0.003082 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.973071 B = 9082.501893 C =10023.870517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.223 3.777 4 H 0.050 0.950 5 C -0.524 4.524 6 H 0.070 0.930 7 C 0.064 3.936 8 N -0.885 5.885 9 Si 0.912 3.088 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.281 1.281 13 O -0.348 6.348 14 C 0.498 3.502 15 O -0.500 6.500 16 C -0.118 4.118 17 C 0.008 3.992 18 C -0.150 4.150 19 C -0.027 4.027 20 S 0.022 5.978 21 C -0.200 4.200 22 C -0.050 4.050 23 N 0.034 4.966 24 O -0.160 6.160 25 O -0.147 6.147 26 C 0.021 3.979 27 H 0.035 0.965 28 H 0.055 0.945 29 H 0.030 0.970 30 H 0.043 0.957 31 H 0.111 0.889 32 H 0.267 0.733 33 H 0.165 0.835 34 H 0.153 0.847 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.089 0.911 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.534 7.035 -17.335 19.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.562 4.562 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.523 5.523 9 Si 0.739 3.261 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.264 6.264 14 C 0.341 3.659 15 O -0.390 6.390 16 C -0.123 4.123 17 C -0.012 4.012 18 C -0.175 4.175 19 C -0.143 4.143 20 S 0.270 5.730 21 C -0.368 4.368 22 C -0.141 4.141 23 N 0.549 4.451 24 O -0.373 6.373 25 O -0.359 6.359 26 C 0.001 3.999 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.129 0.871 32 H 0.077 0.923 33 H 0.182 0.818 34 H 0.171 0.829 35 H 0.107 0.893 36 H 0.133 0.867 37 H 0.107 0.893 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.099 7.280 -17.240 19.683 hybrid contribution 1.753 -0.689 0.542 1.960 sum -4.346 6.591 -16.698 18.470 Atomic orbital electron populations 1.21874 0.98304 0.99248 1.00737 1.22042 0.92678 0.99157 1.03561 1.20808 0.95214 0.88798 0.78123 0.93184 1.21037 0.89368 1.39477 1.06344 0.91211 1.24885 0.99337 0.94622 0.95019 1.69888 1.35420 1.37497 1.09472 0.86220 0.83688 0.77954 0.78284 1.19500 1.20675 1.20653 1.86520 1.32904 1.62239 1.44734 1.20427 0.81633 0.77297 0.86578 1.90843 1.55336 1.58148 1.34720 1.19365 0.95098 1.03077 0.94772 1.21693 0.99037 0.90541 0.89957 1.20979 0.94640 1.01137 1.00773 1.22219 0.96363 0.98169 0.97576 1.87057 1.23483 1.61896 1.00610 1.24217 1.02698 1.06416 1.03452 1.20002 0.87890 1.09219 0.96984 1.43449 1.01974 0.99305 1.00390 1.94580 1.52632 1.65482 1.24618 1.94429 1.75411 1.44029 1.22045 1.20785 0.94395 0.88061 0.96706 0.94616 0.92640 0.95115 0.93860 0.87121 0.92279 0.81779 0.82925 0.89262 0.86732 0.89251 0.81155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.56 37.16 0.32 -2.70 16 2 C -0.14 -3.20 5.49 -26.73 -0.15 -3.34 16 3 C 0.22 5.53 2.25 -27.88 -0.06 5.47 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 5 C -0.52 -13.79 8.90 -34.44 -0.31 -14.09 16 6 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 7 C 0.06 1.67 5.29 -17.82 -0.09 1.58 16 8 N -0.89 -23.98 11.29 55.43 0.63 -23.35 16 9 Si 0.91 20.08 29.54 -169.99 -5.02 15.06 16 10 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 O -0.35 -7.44 9.04 -40.68 -0.37 -7.81 16 14 C 0.50 9.57 6.34 34.43 0.22 9.79 16 15 O -0.50 -10.85 13.52 -19.28 -0.26 -11.11 16 16 C -0.12 -1.73 5.88 -104.95 -0.62 -2.35 16 17 C 0.01 0.10 9.56 -39.56 -0.38 -0.28 16 18 C -0.15 -1.40 9.30 -39.77 -0.37 -1.77 16 19 C -0.03 -0.30 6.13 -38.77 -0.24 -0.53 16 20 S 0.02 0.20 19.37 -107.50 -2.08 -1.88 16 21 C -0.20 -1.00 9.14 101.05 0.92 -0.08 16 22 C -0.05 -0.66 6.83 -80.14 -0.55 -1.21 16 23 N 0.03 0.50 4.45 33.87 0.15 0.65 16 24 O -0.16 -2.49 18.42 -29.46 -0.54 -3.03 16 25 O -0.15 -2.10 15.79 -29.46 -0.47 -2.56 16 26 C 0.02 0.29 9.05 -39.56 -0.36 -0.06 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 1.22 7.79 -51.93 -0.40 0.81 16 29 H 0.03 0.61 6.06 -51.93 -0.31 0.30 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.11 2.84 5.95 -51.93 -0.31 2.53 16 32 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.16 1.72 7.60 -52.48 -0.40 1.32 16 34 H 0.15 0.91 5.86 -52.49 -0.31 0.60 16 35 H 0.09 0.37 7.74 -51.92 -0.40 -0.03 16 36 H 0.11 0.41 8.14 -51.92 -0.42 -0.01 16 37 H 0.09 0.38 7.74 -51.93 -0.40 -0.02 16 38 H 0.17 2.47 7.16 -52.49 -0.38 2.09 16 LS Contribution 339.08 15.07 5.11 5.11 Total: -1.00 -29.54 339.08 -8.61 -38.15 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -4.10 Total: 0.36 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -1.66 Total: -9.58 kcal Atomic # 7 Polarization: -23.48 SS G_CDS: 0.78 Total: -22.70 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -1.64 Total: -24.51 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 0.20 SS G_CDS: -2.08 Total: -1.88 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.54 -8.61 -38.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187967720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.819 kcal (2) G-P(sol) polarization free energy of solvation -29.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds