Wall clock time and date at job start Tue Mar 31 2020 14:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46997 * 2 1 4 4 H 1.09001 * 109.47502 * 55.00061 * 3 2 1 5 5 C 1.50706 * 109.47238 * 174.99896 * 3 2 1 6 6 H 1.07995 * 120.00167 * 119.72028 * 5 3 2 7 7 C 1.37879 * 119.99394 * 299.99727 * 5 3 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47487 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47233 * 120.00158 * 9 7 5 12 12 H 1.48508 * 109.46883 * 239.99963 * 9 7 5 13 13 O 1.45200 * 109.46978 * 294.99673 * 3 2 1 14 14 C 1.34770 * 117.00074 * 90.00475 * 13 3 2 15 15 O 1.21519 * 120.00110 * 359.97438 * 14 13 3 16 16 C 1.47337 * 119.99805 * 180.02562 * 14 13 3 17 17 C 1.39912 * 120.07280 * 359.71845 * 16 14 13 18 18 C 1.36574 * 119.93389 * 179.76277 * 17 16 14 19 19 C 1.39343 * 120.06498 * 0.51944 * 18 17 16 20 20 S 1.76193 * 119.93056 * 179.71964 * 19 18 17 21 21 C 1.81402 * 102.99996 * 0.02562 * 20 19 18 22 22 C 1.39307 * 120.13756 * 359.73271 * 19 18 17 23 23 N 1.48023 * 119.96339 * 180.02562 * 22 19 18 24 24 O 1.21805 * 119.99859 * 179.97438 * 23 22 19 25 25 O 1.21795 * 120.00184 * 359.97416 * 23 22 19 26 26 C 1.36606 * 120.07188 * 0.02562 * 22 19 18 27 27 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47331 * 300.00296 * 1 2 3 29 29 H 1.09001 * 109.46791 * 60.00740 * 1 2 3 30 30 H 1.08993 * 109.47331 * 239.99704 * 2 1 3 31 31 H 1.09002 * 109.46801 * 119.99817 * 2 1 3 32 32 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 33 33 H 1.08003 * 120.03527 * 359.97438 * 17 16 14 34 34 H 1.07991 * 119.96892 * 180.23063 * 18 17 16 35 35 H 1.08998 * 109.46760 * 60.00460 * 21 20 19 36 36 H 1.09008 * 109.46932 * 180.02562 * 21 20 19 37 37 H 1.08993 * 109.46912 * 300.00041 * 21 20 19 38 38 H 1.07995 * 120.03591 * 180.02562 * 26 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1474 1.8849 -0.6544 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0048 0.8814 1.3820 10 1 6.5987 1.5463 0.1945 11 1 6.3988 1.6169 2.6104 12 1 6.4970 -0.5174 1.4632 13 8 1.6559 2.0916 -1.2407 14 6 0.4680 2.7280 -1.2561 15 8 -0.2280 2.7397 -0.2601 16 6 0.0127 3.4085 -2.4810 17 6 0.8150 3.4001 -3.6272 18 6 0.3880 4.0277 -4.7626 19 6 -0.8405 4.6852 -4.7769 20 16 -1.3845 5.5000 -6.2413 21 6 -0.0270 5.1963 -7.4056 22 6 -1.6392 4.6999 -3.6356 23 7 -2.9438 5.3990 -3.6553 24 8 -3.6429 5.4119 -2.6579 25 8 -3.3181 5.9615 -4.6686 26 6 -1.2199 4.0697 -2.4985 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8292 -0.0617 2.9496 33 1 1.7695 2.8949 -3.6153 34 1 1.0051 4.0184 -5.6487 35 1 0.0982 4.1226 -7.5455 36 1 -0.2582 5.6634 -8.3630 37 1 0.8946 5.6208 -7.0077 38 1 -1.8397 4.0811 -1.6142 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187967720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:50 Heat of formation + Delta-G solvation = -77.492898 kcal Electronic energy + Delta-G solvation = -24950.097589 eV Core-core repulsion = 21079.992103 eV Total energy + Delta-G solvation = -3870.105485 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.41154 -41.72474 -40.19010 -37.81480 -37.67862 -35.56587 -33.68277 -33.37144 -32.97920 -29.76654 -29.39471 -27.79946 -26.42466 -25.00156 -23.74388 -22.75677 -21.67106 -20.65042 -19.87086 -19.01008 -18.78612 -18.74614 -18.29337 -17.47219 -17.21844 -16.69249 -16.47452 -15.88140 -15.76608 -15.11115 -14.91302 -14.78636 -14.31021 -13.98870 -13.90738 -13.66251 -13.53433 -13.35512 -13.14557 -13.10238 -12.84958 -12.75232 -12.57393 -12.51558 -12.39622 -12.13122 -11.79987 -11.62194 -11.40838 -11.34357 -11.00293 -10.98724 -10.85176 -10.54480 -8.81439 -8.27677 -6.44507 -1.43216 -0.86715 -0.03362 0.13098 0.22559 1.20579 1.25474 1.43469 1.43639 1.56670 1.78661 2.17238 2.39500 2.99798 3.02980 3.44697 3.51575 3.54871 3.71035 4.17071 4.23282 4.31782 4.33469 4.35405 4.37152 4.48913 4.60954 4.77679 4.80767 4.92950 4.96988 5.06399 5.18100 5.18942 5.32176 5.50580 5.64942 5.91526 6.06255 6.41080 6.58132 6.83992 7.26368 8.79308 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019148 B = 0.003082 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.973071 B = 9082.501893 C =10023.870517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.130 4.130 3 C 0.226 3.774 4 H 0.008 0.992 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.980 3.020 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.274 1.274 13 O -0.347 6.347 14 C 0.496 3.504 15 O -0.536 6.536 16 C -0.140 4.140 17 C 0.022 3.978 18 C -0.130 4.130 19 C -0.017 4.017 20 S 0.007 5.993 21 C -0.192 4.192 22 C -0.065 4.065 23 N 0.035 4.965 24 O -0.213 6.213 25 O -0.126 6.126 26 C 0.020 3.980 27 H 0.061 0.939 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.270 0.730 33 H 0.179 0.821 34 H 0.200 0.800 35 H 0.107 0.893 36 H 0.134 0.866 37 H 0.106 0.894 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.581 7.316 -21.221 22.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.168 4.168 3 C 0.173 3.827 4 H 0.026 0.974 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.804 3.196 10 H -0.184 1.184 11 H -0.206 1.206 12 H -0.199 1.199 13 O -0.263 6.263 14 C 0.342 3.658 15 O -0.428 6.428 16 C -0.145 4.145 17 C 0.001 3.999 18 C -0.155 4.155 19 C -0.134 4.134 20 S 0.257 5.743 21 C -0.359 4.359 22 C -0.157 4.157 23 N 0.546 4.454 24 O -0.414 6.414 25 O -0.347 6.347 26 C 0.000 4.000 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.196 0.804 34 H 0.217 0.783 35 H 0.126 0.874 36 H 0.153 0.847 37 H 0.125 0.875 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.211 7.567 -21.066 22.776 hybrid contribution 1.136 -0.657 1.450 1.956 sum -3.076 6.910 -19.616 21.023 Atomic orbital electron populations 1.21735 0.96585 1.00634 1.00003 1.21885 0.94156 0.98067 1.02688 1.20475 0.94762 0.89227 0.78216 0.97413 1.21349 0.90142 1.39992 1.06892 0.90925 1.25793 1.04105 0.93928 0.94447 1.70020 1.37402 1.37923 1.09941 0.85167 0.77823 0.78214 0.78405 1.18358 1.20598 1.19891 1.86482 1.34272 1.62729 1.42812 1.21154 0.80394 0.76467 0.87806 1.90824 1.55981 1.59441 1.36547 1.18990 0.96305 1.05120 0.94105 1.21861 0.98797 0.90008 0.89225 1.21409 0.93893 0.98923 1.01255 1.22574 0.96181 0.97135 0.97520 1.87207 1.26212 1.60347 1.00551 1.24402 1.01017 1.08090 1.02439 1.19991 0.87740 1.10170 0.97810 1.43613 1.02398 0.99296 1.00125 1.94590 1.53840 1.67680 1.25249 1.94401 1.75568 1.42961 1.21729 1.20571 0.94196 0.88503 0.96780 0.92016 0.94652 0.94580 0.92991 0.89491 0.92084 0.80373 0.78333 0.87432 0.84744 0.87499 0.82951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.56 71.98 0.62 -5.04 16 2 C -0.13 -6.25 5.49 30.59 0.17 -6.08 16 3 C 0.23 11.67 2.25 29.85 0.07 11.73 16 4 H 0.01 0.48 7.16 -2.39 -0.02 0.46 16 5 C -0.55 -29.17 8.90 25.60 0.23 -28.94 16 6 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 7 C 0.02 0.90 5.29 84.66 0.45 1.35 16 8 N -0.91 -50.81 11.29 21.45 0.24 -50.57 16 9 Si 0.98 40.96 29.54 68.60 2.03 42.99 16 10 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 11 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 13 O -0.35 -15.15 9.04 -56.81 -0.51 -15.66 16 14 C 0.50 19.82 6.34 70.22 0.44 20.27 16 15 O -0.54 -24.84 13.52 19.77 0.27 -24.58 16 16 C -0.14 -4.12 5.88 -20.08 -0.12 -4.23 16 17 C 0.02 0.46 9.56 22.29 0.21 0.67 16 18 C -0.13 -1.87 9.30 22.15 0.21 -1.66 16 19 C -0.02 -0.33 6.13 22.79 0.14 -0.19 16 20 S 0.01 0.10 19.37 -56.49 -1.09 -0.99 16 21 C -0.19 -0.79 9.14 113.37 1.04 0.25 16 22 C -0.07 -1.71 6.83 36.25 0.25 -1.46 16 23 N 0.04 1.05 4.45 -46.76 -0.21 0.84 16 24 O -0.21 -7.11 18.42 18.88 0.35 -6.76 16 25 O -0.13 -3.51 15.79 18.89 0.30 -3.21 16 26 C 0.02 0.59 9.05 22.29 0.20 0.79 16 27 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.03 1.62 7.79 -2.39 -0.02 1.60 16 29 H 0.04 1.47 6.06 -2.39 -0.01 1.45 16 30 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.09 4.62 5.95 -2.39 -0.01 4.61 16 32 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 33 H 0.18 3.18 7.60 -2.91 -0.02 3.15 16 34 H 0.20 1.03 5.86 -2.92 -0.02 1.02 16 35 H 0.11 0.18 7.74 -2.39 -0.02 0.16 16 36 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.11 0.20 7.74 -2.39 -0.02 0.18 16 38 H 0.15 4.91 7.16 -2.91 -0.02 4.89 16 Total: -1.00 -68.47 339.08 6.37 -62.09 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 1.11 Total: 8.41 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: 3.90 Total: -12.55 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.03 Total: -49.73 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: 0.40 Total: -50.21 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -1.09 Total: -0.99 kcal Total: -68.47 6.37 -62.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187967720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.400 kcal (2) G-P(sol) polarization free energy of solvation -68.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds