Wall clock time and date at job start Tue Mar 31 2020 14:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 O 1.45201 * 109.47339 * 64.99923 * 3 2 1 14 14 C 1.34706 * 116.99497 * 270.00216 * 13 3 2 15 15 O 1.21472 * 120.00365 * 359.97438 * 14 13 3 16 16 C 1.47745 * 119.99669 * 179.97438 * 14 13 3 17 17 C 1.39680 * 120.11352 * 359.97438 * 16 14 13 18 18 C 1.37985 * 120.01547 * 179.97438 * 17 16 14 19 19 C 1.38237 * 120.23924 * 359.97438 * 18 17 16 20 20 C 1.39056 * 120.21917 * 0.02562 * 19 18 17 21 21 S 1.76205 * 120.00135 * 180.02562 * 20 19 18 22 22 C 1.81395 * 103.00300 * 0.02562 * 21 20 19 23 23 C 1.38738 * 119.98882 * 359.72672 * 20 19 18 24 24 N 1.48019 * 120.11601 * 180.29865 * 23 20 19 25 25 O 1.21796 * 120.00172 * 270.22638 * 24 23 20 26 26 O 1.21799 * 119.99851 * 90.23460 * 24 23 20 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 32 32 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 33 33 H 1.08002 * 119.99235 * 0.02562 * 17 16 14 34 34 H 1.07996 * 119.88215 * 179.97438 * 18 17 16 35 35 H 1.07989 * 119.89081 * 179.97438 * 19 18 17 36 36 H 1.09003 * 109.46918 * 300.00023 * 22 21 20 37 37 H 1.08995 * 109.47357 * 59.99715 * 22 21 20 38 38 H 1.08995 * 109.47169 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 8 1.6559 2.0918 1.2407 14 6 0.4685 2.7277 1.2559 15 8 -0.2268 2.7401 0.2599 16 6 0.0118 3.4103 2.4840 17 6 0.8091 3.3972 3.6308 18 6 0.3809 4.0358 4.7766 19 6 -0.8364 4.6907 4.7950 20 6 -1.6380 4.7100 3.6590 21 16 -3.1883 5.5470 3.6886 22 6 -3.2683 6.1981 5.3798 23 6 -1.2142 4.0753 2.5003 24 7 -2.0623 4.0997 1.2874 25 8 -2.8879 3.2233 1.1039 26 8 -1.9344 4.9961 0.4728 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8293 -0.0604 -2.9502 33 1 1.7614 2.8878 3.6205 34 1 0.9989 4.0240 5.6622 35 1 -1.1662 5.1883 5.6949 36 1 -3.2246 5.3720 6.0896 37 1 -2.4265 6.8691 5.5511 38 1 -4.2015 6.7448 5.5149 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187973452.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:58 Heat of formation + Delta-G solvation = -56.437060 kcal Electronic energy + Delta-G solvation = -25710.535293 eV Core-core repulsion = 21841.342857 eV Total energy + Delta-G solvation = -3869.192436 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.95627 -40.16228 -38.97366 -36.11268 -36.06437 -33.70111 -32.41742 -32.19701 -31.35614 -29.56772 -27.48204 -26.58886 -24.65640 -23.41490 -22.70941 -21.31223 -19.88470 -19.22589 -18.43973 -18.29670 -17.39380 -16.80819 -16.64933 -16.04340 -15.65403 -15.53892 -15.20226 -14.64201 -14.59207 -14.47085 -13.61099 -13.52102 -13.15218 -12.90480 -12.88074 -12.32293 -12.24206 -11.61281 -11.44461 -11.29452 -11.28995 -11.09867 -11.04835 -10.72812 -10.70449 -10.68547 -10.45509 -10.38769 -10.10513 -9.85188 -9.80416 -9.51097 -8.93255 -8.53359 -8.08283 -6.25185 -4.33746 0.05712 0.32220 0.70441 0.86774 1.47660 1.72023 2.43719 3.03639 3.20245 3.26949 3.28024 3.31507 4.13729 4.24347 4.28904 4.45807 4.46796 4.56156 4.61651 4.69515 5.04102 5.06816 5.12725 5.40461 5.58790 5.71650 5.97678 6.19291 6.25776 6.38499 6.56974 6.74537 6.87720 7.06529 7.11793 7.50371 7.63626 7.76521 7.89447 8.04116 8.31688 8.73656 9.31377 10.81548 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.021466 B = 0.003543 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.088532 B = 7900.596383 C = 8555.618175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.051 0.949 5 C -0.526 4.526 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.884 5.884 9 Si 0.914 3.086 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.271 1.271 13 O -0.340 6.340 14 C 0.486 3.514 15 O -0.489 6.489 16 C -0.047 4.047 17 C -0.058 4.058 18 C -0.076 4.076 19 C -0.105 4.105 20 C -0.063 4.063 21 S -0.083 6.083 22 C -0.148 4.148 23 C 0.036 3.964 24 N 0.033 4.967 25 O -0.126 6.126 26 O -0.126 6.126 27 H 0.036 0.964 28 H 0.055 0.945 29 H 0.028 0.972 30 H 0.043 0.957 31 H 0.112 0.888 32 H 0.268 0.732 33 H 0.167 0.833 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.845 9.224 18.628 22.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.171 3.829 4 H 0.069 0.931 5 C -0.563 4.563 6 H 0.088 0.912 7 C -0.138 4.138 8 N -0.521 5.521 9 Si 0.740 3.260 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.256 6.256 14 C 0.327 3.673 15 O -0.379 6.379 16 C -0.051 4.051 17 C -0.080 4.080 18 C -0.096 4.096 19 C -0.130 4.130 20 C -0.177 4.177 21 S 0.161 5.839 22 C -0.316 4.316 23 C -0.052 4.052 24 N 0.565 4.435 25 O -0.350 6.350 26 O -0.350 6.350 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.130 0.870 32 H 0.078 0.922 33 H 0.184 0.816 34 H 0.170 0.830 35 H 0.166 0.834 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.488 9.300 17.942 22.325 hybrid contribution 1.626 -0.264 0.462 1.711 sum -7.862 9.036 18.404 21.958 Atomic orbital electron populations 1.21861 0.98082 0.99345 1.00786 1.22046 0.92779 0.98950 1.03572 1.20883 0.95313 0.88869 0.77864 0.93109 1.20977 0.89187 1.39618 1.06566 0.91233 1.24892 0.99399 0.94621 0.94936 1.69887 1.35519 1.37346 1.09394 0.86245 0.83582 0.78657 0.77490 1.20299 1.20864 1.19614 1.86511 1.32174 1.61896 1.45031 1.20609 0.82320 0.77873 0.86450 1.90931 1.55051 1.57527 1.34397 1.19232 0.92075 0.98139 0.95629 1.21716 0.99927 0.96344 0.89979 1.21402 0.95109 0.94344 0.98705 1.21360 0.94739 1.00570 0.96308 1.21323 1.00604 1.01483 0.94325 1.86227 1.16790 1.62833 1.18054 1.23808 1.07647 1.04746 0.95445 1.20360 0.93185 1.05271 0.86374 1.42989 0.99732 0.99878 1.00910 1.94541 1.28596 1.30679 1.81170 1.94548 1.73217 1.28872 1.38390 0.94473 0.92571 0.95303 0.93852 0.87020 0.92187 0.81565 0.82977 0.83423 0.89026 0.89022 0.86452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.56 37.16 0.32 -2.93 16 2 C -0.14 -3.35 5.49 -26.73 -0.15 -3.50 16 3 C 0.22 5.85 2.25 -27.88 -0.06 5.78 16 4 H 0.05 1.50 7.16 -51.93 -0.37 1.13 16 5 C -0.53 -14.35 8.90 -34.44 -0.31 -14.66 16 6 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -24.74 11.29 55.43 0.63 -24.11 16 9 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 13 O -0.34 -7.85 9.05 -40.51 -0.37 -8.22 16 14 C 0.49 10.54 6.35 34.62 0.22 10.76 16 15 O -0.49 -12.06 11.63 -25.87 -0.30 -12.36 16 16 C -0.05 -0.80 5.87 -105.01 -0.62 -1.42 16 17 C -0.06 -0.72 9.61 -39.14 -0.38 -1.09 16 18 C -0.08 -0.63 10.02 -39.67 -0.40 -1.03 16 19 C -0.11 -0.90 9.36 -39.28 -0.37 -1.27 16 20 C -0.06 -0.79 6.11 -39.09 -0.24 -1.03 16 21 S -0.08 -0.91 21.97 -107.50 -2.36 -3.27 16 22 C -0.15 -0.73 9.15 101.05 0.92 0.19 16 23 C 0.04 0.59 6.16 -79.30 -0.49 0.11 16 24 N 0.03 0.64 1.83 34.28 0.06 0.71 16 25 O -0.13 -2.59 18.92 -33.28 -0.63 -3.22 16 26 O -0.13 -2.63 18.93 -33.20 -0.63 -3.26 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.35 7.79 -51.93 -0.40 0.95 16 29 H 0.03 0.64 6.06 -51.93 -0.31 0.32 16 30 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.11 2.99 5.95 -51.93 -0.31 2.68 16 32 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 33 H 0.17 1.90 7.60 -52.49 -0.40 1.50 16 34 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.15 0.69 5.86 -52.49 -0.31 0.39 16 36 H 0.09 0.33 7.74 -51.92 -0.40 -0.07 16 37 H 0.09 0.33 7.75 -51.93 -0.40 -0.07 16 38 H 0.12 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 342.11 15.07 5.16 5.16 Total: -1.00 -33.33 342.11 -9.24 -42.57 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -4.15 Total: -1.19 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.63 Total: -8.44 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.69 Total: -23.41 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -1.93 Total: -27.06 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.36 Total: -3.27 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.33 -9.24 -42.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187973452.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.865 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds