Wall clock time and date at job start Tue Mar 31 2020 14:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 O 1.45201 * 109.47339 * 64.99923 * 3 2 1 14 14 C 1.34706 * 116.99497 * 270.00216 * 13 3 2 15 15 O 1.21472 * 120.00365 * 359.97438 * 14 13 3 16 16 C 1.47745 * 119.99669 * 179.97438 * 14 13 3 17 17 C 1.39680 * 120.11352 * 359.97438 * 16 14 13 18 18 C 1.37985 * 120.01547 * 179.97438 * 17 16 14 19 19 C 1.38237 * 120.23924 * 359.97438 * 18 17 16 20 20 C 1.39056 * 120.21917 * 0.02562 * 19 18 17 21 21 S 1.76205 * 120.00135 * 180.02562 * 20 19 18 22 22 C 1.81395 * 103.00300 * 0.02562 * 21 20 19 23 23 C 1.38738 * 119.98882 * 359.72672 * 20 19 18 24 24 N 1.48019 * 120.11601 * 180.29865 * 23 20 19 25 25 O 1.21796 * 120.00172 * 270.22638 * 24 23 20 26 26 O 1.21799 * 119.99851 * 90.23460 * 24 23 20 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 32 32 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 33 33 H 1.08002 * 119.99235 * 0.02562 * 17 16 14 34 34 H 1.07996 * 119.88215 * 179.97438 * 18 17 16 35 35 H 1.07989 * 119.89081 * 179.97438 * 19 18 17 36 36 H 1.09003 * 109.46918 * 300.00023 * 22 21 20 37 37 H 1.08995 * 109.47357 * 59.99715 * 22 21 20 38 38 H 1.08995 * 109.47169 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 8 1.6559 2.0918 1.2407 14 6 0.4685 2.7277 1.2559 15 8 -0.2268 2.7401 0.2599 16 6 0.0118 3.4103 2.4840 17 6 0.8091 3.3972 3.6308 18 6 0.3809 4.0358 4.7766 19 6 -0.8364 4.6907 4.7950 20 6 -1.6380 4.7100 3.6590 21 16 -3.1883 5.5470 3.6886 22 6 -3.2683 6.1981 5.3798 23 6 -1.2142 4.0753 2.5003 24 7 -2.0623 4.0997 1.2874 25 8 -2.8879 3.2233 1.1039 26 8 -1.9344 4.9961 0.4728 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8293 -0.0604 -2.9502 33 1 1.7614 2.8878 3.6205 34 1 0.9989 4.0240 5.6622 35 1 -1.1662 5.1883 5.6949 36 1 -3.2246 5.3720 6.0896 37 1 -2.4265 6.8691 5.5511 38 1 -4.2015 6.7448 5.5149 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187973452.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:57 Heat of formation + Delta-G solvation = -75.251573 kcal Electronic energy + Delta-G solvation = -25711.351152 eV Core-core repulsion = 21841.342857 eV Total energy + Delta-G solvation = -3870.008294 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.36626 -41.74601 -40.18950 -37.90712 -37.63362 -35.66699 -33.69084 -33.31343 -33.05554 -30.07169 -29.41057 -27.91893 -25.99925 -25.11769 -24.05813 -22.79292 -21.74366 -20.56237 -19.93895 -19.57288 -18.94531 -18.43984 -18.17221 -17.39652 -17.33341 -16.71396 -16.47376 -16.21594 -15.39304 -15.23130 -15.03163 -14.84634 -14.42795 -14.10833 -13.92476 -13.59550 -13.51183 -13.39814 -13.23253 -13.12152 -12.90419 -12.85802 -12.62984 -12.42031 -12.30174 -12.19193 -11.91251 -11.77514 -11.53045 -11.50824 -11.37401 -10.95654 -10.81732 -10.59291 -8.92314 -8.31643 -6.50242 -1.04537 -0.68149 -0.59378 -0.15253 0.30826 1.13068 1.16210 1.38963 1.43392 1.50663 1.59775 2.07325 2.35457 2.98341 3.20539 3.24695 3.49891 3.67916 3.83537 4.00801 4.22331 4.22663 4.25621 4.27850 4.39712 4.45350 4.69579 4.75604 4.76322 4.86121 4.95696 5.04526 5.08631 5.18639 5.26974 5.43134 5.55729 5.78880 5.96710 6.30614 6.44475 6.67219 7.20359 8.75587 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.021466 B = 0.003543 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.088532 B = 7900.596383 C = 8555.618175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.127 4.127 3 C 0.227 3.773 4 H 0.002 0.998 5 C -0.550 4.550 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.987 3.013 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.263 1.263 13 O -0.339 6.339 14 C 0.479 3.521 15 O -0.533 6.533 16 C -0.084 4.084 17 C -0.054 4.054 18 C -0.044 4.044 19 C -0.078 4.078 20 C -0.060 4.060 21 S -0.153 6.153 22 C -0.129 4.129 23 C 0.003 3.997 24 N 0.038 4.962 25 O -0.152 6.152 26 O -0.163 6.163 27 H 0.065 0.935 28 H 0.029 0.971 29 H 0.027 0.973 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.271 0.729 33 H 0.174 0.826 34 H 0.213 0.787 35 H 0.203 0.797 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.441 10.218 23.806 26.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.165 4.165 3 C 0.174 3.826 4 H 0.020 0.980 5 C -0.587 4.587 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.809 3.191 10 H -0.189 1.189 11 H -0.206 1.206 12 H -0.187 1.187 13 O -0.254 6.254 14 C 0.324 3.676 15 O -0.425 6.425 16 C -0.088 4.088 17 C -0.075 4.075 18 C -0.063 4.063 19 C -0.101 4.101 20 C -0.174 4.174 21 S 0.091 5.909 22 C -0.297 4.297 23 C -0.085 4.085 24 N 0.566 4.434 25 O -0.375 6.375 26 O -0.383 6.383 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.191 0.809 34 H 0.230 0.770 35 H 0.220 0.780 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.109 10.321 23.133 26.597 hybrid contribution 1.089 -0.460 -0.947 1.514 sum -7.020 9.861 22.186 25.274 Atomic orbital electron populations 1.21700 0.96790 1.00670 0.99469 1.21882 0.93815 0.97879 1.02915 1.20551 0.95109 0.89212 0.77731 0.98027 1.21285 0.89660 1.40442 1.07344 0.90812 1.25883 1.04613 0.93712 0.94181 1.70030 1.37710 1.37668 1.09874 0.85127 0.77100 0.79318 0.77540 1.18859 1.20632 1.18709 1.86473 1.33426 1.62363 1.43167 1.21537 0.81071 0.77005 0.87958 1.90904 1.55885 1.59120 1.36616 1.19031 0.93704 1.00892 0.95124 1.21999 0.99434 0.96461 0.89639 1.22055 0.94942 0.90752 0.98530 1.22126 0.93484 0.98417 0.96108 1.21656 1.01452 1.00483 0.93792 1.86640 1.16634 1.63121 1.24543 1.24044 1.09559 1.05736 0.90315 1.20525 0.93202 1.08774 0.85963 1.43475 0.99449 0.98803 1.01716 1.94486 1.30044 1.30941 1.82059 1.94502 1.73958 1.29540 1.40340 0.91579 0.95168 0.95375 0.92704 0.89151 0.91927 0.80856 0.77011 0.77989 0.86579 0.86661 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.15 8.56 71.98 0.62 -5.53 16 2 C -0.13 -6.56 5.49 30.60 0.17 -6.39 16 3 C 0.23 12.61 2.25 29.85 0.07 12.67 16 4 H 0.00 0.12 7.16 -2.39 -0.02 0.11 16 5 C -0.55 -30.92 8.90 25.60 0.23 -30.69 16 6 H 0.07 3.97 7.81 -2.91 -0.02 3.95 16 7 C 0.02 0.88 5.29 84.66 0.45 1.33 16 8 N -0.92 -53.01 11.29 21.45 0.24 -52.77 16 9 Si 0.99 42.42 29.54 68.60 2.03 44.44 16 10 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 13 O -0.34 -16.38 9.05 -56.16 -0.51 -16.89 16 14 C 0.48 22.17 6.35 70.34 0.45 22.61 16 15 O -0.53 -28.74 11.63 26.26 0.31 -28.43 16 16 C -0.08 -2.90 5.87 -20.12 -0.12 -3.02 16 17 C -0.05 -1.19 9.61 22.56 0.22 -0.97 16 18 C -0.04 -0.46 10.02 22.21 0.22 -0.23 16 19 C -0.08 -0.87 9.36 22.47 0.21 -0.66 16 20 C -0.06 -1.36 6.11 22.59 0.14 -1.22 16 21 S -0.15 -3.13 21.97 -56.49 -1.24 -4.37 16 22 C -0.13 -0.60 9.15 113.37 1.04 0.44 16 23 C 0.00 0.10 6.16 36.80 0.23 0.33 16 24 N 0.04 1.62 1.83 -45.46 -0.08 1.54 16 25 O -0.15 -6.83 18.92 22.54 0.43 -6.40 16 26 O -0.16 -7.47 18.93 22.46 0.43 -7.05 16 27 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.03 1.55 7.79 -2.39 -0.02 1.53 16 29 H 0.03 1.30 6.06 -2.38 -0.01 1.29 16 30 H 0.05 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.09 5.08 5.95 -2.39 -0.01 5.06 16 32 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 33 H 0.17 3.52 7.60 -2.91 -0.02 3.50 16 34 H 0.21 -0.12 8.06 -2.91 -0.02 -0.15 16 35 H 0.20 0.12 5.86 -2.92 -0.02 0.10 16 36 H 0.12 0.06 7.74 -2.39 -0.02 0.04 16 37 H 0.11 0.08 7.75 -2.39 -0.02 0.06 16 38 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 Total: -1.00 -84.22 342.11 6.61 -77.62 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 1.11 Total: 3.63 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 3.91 Total: -11.33 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 0.16 Total: -51.23 kcal Atomic # 8 Polarization: -59.42 SS G_CDS: 0.65 Total: -58.77 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -1.24 Total: -4.37 kcal Total: -84.22 6.61 -77.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187973452.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.365 kcal (2) G-P(sol) polarization free energy of solvation -84.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds