Wall clock time and date at job start Tue Mar 31 2020 14:37:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08995 * 109.47466 * 2 1
4 4 C 1.53010 * 109.46887 * 120.00338 * 2 1 3
5 5 C 1.50697 * 109.47097 * 184.99773 * 4 2 1
6 6 C 1.38242 * 119.98711 * 89.99554 * 5 4 2
7 7 C 1.38224 * 120.00951 * 179.71980 * 6 5 4
8 8 C 1.38325 * 119.98750 * 0.26296 * 7 6 5
9 9 Br 1.89100 * 120.01208 * 180.02562 * 8 7 6
10 10 C 1.38329 * 119.97885 * 359.97438 * 8 7 6
11 11 C 1.38213 * 119.99239 * 0.02562 * 10 8 7
12 12 N 1.46905 * 109.47074 * 239.99596 * 2 1 3
13 13 C 1.46903 * 110.99288 * 85.00728 * 12 2 1
14 14 C 1.53007 * 109.46651 * 179.97438 * 13 12 2
15 15 C 1.52997 * 109.46912 * 179.97438 * 14 13 12
16 16 C 1.50696 * 109.46955 * 180.02562 * 15 14 13
17 17 H 1.08003 * 120.00216 * 359.97438 * 16 15 14
18 18 C 1.37883 * 120.00014 * 180.02562 * 16 15 14
19 19 N 1.31513 * 119.99961 * 0.02562 * 18 16 15
20 20 Si 1.86798 * 120.00191 * 179.97438 * 18 16 15
21 21 H 1.48505 * 109.47035 * 0.02562 * 20 18 16
22 22 H 1.48502 * 109.46978 * 119.99979 * 20 18 16
23 23 H 1.48492 * 109.47658 * 240.00362 * 20 18 16
24 24 H 1.08996 * 109.47083 * 300.00193 * 1 2 3
25 25 H 1.08999 * 109.46612 * 59.99640 * 1 2 3
26 26 H 1.09000 * 109.47056 * 179.97438 * 1 2 3
27 27 H 1.09003 * 109.46877 * 64.99752 * 4 2 1
28 28 H 1.08995 * 109.46596 * 305.00029 * 4 2 1
29 29 H 1.08002 * 119.99955 * 0.02562 * 6 5 4
30 30 H 1.07999 * 120.00721 * 180.27782 * 7 6 5
31 31 H 1.08002 * 120.00250 * 179.97438 * 10 8 7
32 32 H 1.08001 * 119.99687 * 179.97438 * 11 10 8
33 33 H 1.00896 * 110.99947 * 321.05189 * 12 2 1
34 34 H 1.08996 * 109.46972 * 299.99456 * 13 12 2
35 35 H 1.08998 * 109.47228 * 59.99990 * 13 12 2
36 36 H 1.08996 * 109.47166 * 299.99555 * 14 13 12
37 37 H 1.09001 * 109.46856 * 59.99693 * 14 13 12
38 38 H 1.09007 * 109.47587 * 300.00277 * 15 14 13
39 39 H 1.09001 * 109.47266 * 60.00366 * 15 14 13
40 40 H 0.96999 * 120.00034 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7214 1.2493
5 6 3.5418 -0.6151 1.3128
6 6 4.1321 0.4492 1.9684
7 6 5.5096 0.5441 2.0319
8 6 6.2975 -0.4233 1.4347
9 35 8.1821 -0.2946 1.5217
10 6 5.7064 -1.4855 0.7745
11 6 4.3289 -1.5795 0.7116
12 7 2.0197 -0.6926 -1.1994
13 6 2.0826 0.2226 -2.3468
14 6 2.5963 -0.5329 -3.5741
15 6 2.6613 0.4200 -4.7693
16 6 3.1667 -0.3242 -5.9783
17 1 3.4170 -1.3721 -5.9017
18 6 3.3106 0.3328 -7.1820
19 7 3.0072 1.6090 -7.2748
20 14 3.9377 -0.5896 -8.6804
21 1 4.2061 -2.0037 -8.3147
22 1 2.9139 -0.5424 -9.7550
23 1 5.1912 0.0437 -9.1628
24 1 -0.3633 0.5138 0.8899
25 1 -0.3632 0.5139 -0.8900
26 1 -0.3633 -1.0277 -0.0005
27 1 1.7515 -1.7716 1.2055
28 1 1.6053 -0.2619 2.1369
29 1 3.5169 1.2042 2.4353
30 1 5.9707 1.3732 2.5480
31 1 6.3212 -2.2409 0.3077
32 1 3.8673 -2.4086 0.1958
33 1 1.4495 -1.4980 -1.4100
34 1 1.0872 0.6163 -2.5525
35 1 2.7590 1.0461 -2.1181
36 1 3.5918 -0.9263 -3.3682
37 1 1.9202 -1.3567 -3.8030
38 1 1.6656 0.8132 -4.9752
39 1 3.3372 1.2440 -4.5407
40 1 3.1080 2.0711 -8.1217
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000188182154.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:37:42
Heat of formation + Delta-G solvation = -18.471504 kcal
Electronic energy + Delta-G solvation = -19022.454216 eV
Core-core repulsion = 16074.269792 eV
Total energy + Delta-G solvation = -2948.184423 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 325.074 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.37865 -38.40691 -36.02985 -34.43835 -33.20092 -31.89696 -31.39129 -30.22662
-27.64498 -26.92883 -24.34835 -23.66461 -22.46513 -22.08276 -21.14305 -18.50152
-17.57506 -16.73224 -16.47889 -16.44530 -16.06397 -15.67047 -15.40017 -14.74346
-14.47955 -14.33911 -14.23777 -13.89284 -13.71442 -13.32059 -13.13514 -12.90354
-12.77296 -12.67447 -12.45463 -12.19105 -12.05886 -11.87100 -11.74848 -11.53205
-11.50289 -11.34381 -11.21743 -11.03005 -10.56258 -9.86581 -9.43004 -9.18474
-8.20568 -6.31462 0.23171 0.48223 0.72340 1.39263 1.39914 1.53288
2.40631 2.75662 3.12698 3.29913 3.86362 3.91332 4.06932 4.15537
4.28041 4.35142 4.40465 4.51307 4.52632 4.55109 4.73343 4.79141
4.83413 4.89357 4.98361 5.02561 5.12981 5.18635 5.23271 5.26827
5.30684 5.34719 5.42105 5.52819 5.74927 5.76297 5.86284 6.00723
6.15917 6.28920 6.61462 6.85944 7.37942 8.91630
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.010169 B = 0.003212 C = 0.002557
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2752.850989 B = 8714.373649 C =10947.473872
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.087 3.913
3 H 0.065 0.935
4 C -0.064 4.064
5 C -0.053 4.053
6 C -0.122 4.122
7 C -0.103 4.103
8 C -0.112 4.112
9 Br -0.064 7.064
10 C -0.107 4.107
11 C -0.092 4.092
12 N -0.680 5.680
13 C 0.079 3.921
14 C -0.090 4.090
15 C 0.025 3.975
16 C -0.541 4.541
17 H 0.059 0.941
18 C -0.001 4.001
19 N -0.934 5.934
20 Si 0.964 3.036
21 H -0.262 1.262
22 H -0.276 1.276
23 H -0.279 1.279
24 H 0.077 0.923
25 H 0.041 0.959
26 H 0.068 0.932
27 H 0.084 0.916
28 H 0.097 0.903
29 H 0.149 0.851
30 H 0.139 0.861
31 H 0.130 0.870
32 H 0.137 0.863
33 H 0.344 0.656
34 H 0.022 0.978
35 H 0.050 0.950
36 H 0.048 0.952
37 H 0.051 0.949
38 H -0.010 1.010
39 H -0.013 1.013
40 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.215 -5.177 25.081 25.705
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C -0.023 4.023
3 H 0.083 0.917
4 C -0.102 4.102
5 C -0.054 4.054
6 C -0.140 4.140
7 C -0.123 4.123
8 C -0.191 4.191
9 Br 0.021 6.979
10 C -0.127 4.127
11 C -0.111 4.111
12 N -0.311 5.311
13 C -0.051 4.051
14 C -0.128 4.128
15 C -0.012 4.012
16 C -0.579 4.579
17 H 0.077 0.923
18 C -0.199 4.199
19 N -0.575 5.575
20 Si 0.789 3.211
21 H -0.185 1.185
22 H -0.202 1.202
23 H -0.204 1.204
24 H 0.096 0.904
25 H 0.060 0.940
26 H 0.087 0.913
27 H 0.103 0.897
28 H 0.116 0.884
29 H 0.166 0.834
30 H 0.157 0.843
31 H 0.148 0.852
32 H 0.154 0.846
33 H 0.163 0.837
34 H 0.040 0.960
35 H 0.069 0.931
36 H 0.067 0.933
37 H 0.070 0.930
38 H 0.008 0.992
39 H 0.005 0.995
40 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 3.587 -4.913 25.173 25.897
hybrid contribution -0.799 0.138 -1.494 1.700
sum 2.788 -4.775 23.679 24.316
Atomic orbital electron populations
1.22439 0.95864 1.02859 1.02369 1.21574 0.93175 0.97517 0.90028
0.91699 1.20690 0.89680 1.02452 0.97351 1.20105 0.96805 0.93681
0.94774 1.21326 0.93972 0.98602 1.00124 1.21248 0.94143 0.97894
0.98975 1.21881 0.89953 1.00610 1.06623 1.96665 1.04730 1.98489
1.98038 1.21269 0.95982 0.97211 0.98219 1.21176 0.92225 0.99969
0.97747 1.60565 1.57488 1.09644 1.03392 1.21736 0.98114 0.95034
0.90194 1.21341 1.00074 0.97964 0.93407 1.18966 0.94624 0.94471
0.93159 1.21732 1.43588 0.96866 0.95738 0.92262 1.25989 0.95675
0.95757 1.02460 1.70105 1.50002 1.10709 1.26666 0.85407 0.77996
0.79049 0.78662 1.18544 1.20200 1.20445 0.90412 0.94030 0.91337
0.89694 0.88438 0.83359 0.84270 0.85167 0.84564 0.83688 0.96026
0.93135 0.93279 0.92986 0.99153 0.99506 0.92800
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.91 9.16 71.98 0.66 -2.25 16
2 C 0.09 1.69 2.58 44.92 0.12 1.81 16
3 H 0.06 1.45 7.80 -2.39 -0.02 1.43 16
4 C -0.06 -0.98 5.03 29.85 0.15 -0.83 16
5 C -0.05 -1.05 4.96 -19.86 -0.10 -1.15 16
6 C -0.12 -2.30 9.70 22.27 0.22 -2.08 16
7 C -0.10 -2.15 9.79 22.29 0.22 -1.93 16
8 C -0.11 -2.62 6.22 22.31 0.14 -2.48 16
9 Br -0.06 -1.44 33.70 -20.37 -0.69 -2.12 16
10 C -0.11 -2.53 9.79 22.29 0.22 -2.31 16
11 C -0.09 -2.04 9.30 22.26 0.21 -1.84 16
12 N -0.68 -17.03 5.62 -491.53 -2.76 -19.80 16
13 C 0.08 2.64 5.48 86.30 0.47 3.11 16
14 C -0.09 -3.73 5.41 30.60 0.17 -3.56 16
15 C 0.03 1.37 4.97 29.85 0.15 1.52 16
16 C -0.54 -31.51 9.11 25.60 0.23 -31.27 16
17 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16
18 C 0.00 -0.08 5.46 84.66 0.46 0.38 16
19 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16
20 Si 0.96 44.97 29.54 68.60 2.03 47.00 16
21 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16
22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16
23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16
24 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16
25 H 0.04 0.84 7.45 -2.39 -0.02 0.82 16
26 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16
27 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16
28 H 0.10 1.07 8.08 -2.39 -0.02 1.05 16
29 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16
30 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16
31 H 0.13 2.89 8.06 -2.91 -0.02 2.86 16
32 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16
33 H 0.34 7.84 8.47 -89.70 -0.76 7.08 16
34 H 0.02 0.73 7.44 -2.39 -0.02 0.71 16
35 H 0.05 1.84 8.05 -2.39 -0.02 1.82 16
36 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16
37 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16
38 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16
39 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16
40 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16
Total: -1.00 -65.89 352.93 2.41 -63.48
By element:
Atomic # 1 Polarization: 11.65 SS G_CDS: 0.25 Total: 11.90 kcal
Atomic # 6 Polarization: -46.19 SS G_CDS: 3.31 Total: -42.88 kcal
Atomic # 7 Polarization: -74.89 SS G_CDS: -2.48 Total: -77.37 kcal
Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal
Atomic # 35 Polarization: -1.44 SS G_CDS: -0.69 Total: -2.12 kcal
Total: -65.89 2.41 -63.48 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000188182154.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.004 kcal
(2) G-P(sol) polarization free energy of solvation -65.890 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.886 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.475 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.472 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds