Wall clock time and date at job start Tue Mar 31 2020 14:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47070 * 2 1 4 4 H 1.09001 * 109.46868 * 305.32305 * 3 2 1 5 5 C 1.50700 * 109.46896 * 185.32659 * 3 2 1 6 6 H 1.07996 * 119.99935 * 239.99303 * 5 3 2 7 7 C 1.37875 * 120.00157 * 59.99905 * 5 3 2 8 8 N 1.31516 * 119.99985 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99983 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47494 * 60.00229 * 9 7 5 11 11 H 1.48502 * 109.47052 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47383 * 299.99949 * 9 7 5 13 13 N 1.46898 * 109.47119 * 65.32559 * 3 2 1 14 14 C 1.46898 * 110.99952 * 203.98360 * 13 3 2 15 15 H 1.09000 * 109.46999 * 327.24533 * 14 13 3 16 16 C 1.53007 * 109.46933 * 87.23951 * 14 13 3 17 17 C 1.52995 * 109.47433 * 207.24021 * 14 13 3 18 18 C 1.50702 * 109.46829 * 64.99953 * 17 14 13 19 19 C 1.38244 * 119.99350 * 270.25650 * 18 17 14 20 20 C 1.38211 * 120.01168 * 180.20984 * 19 18 17 21 21 C 1.38329 * 119.99092 * 359.51483 * 20 19 18 22 22 Br 1.89098 * 120.01239 * 180.27407 * 21 20 19 23 23 C 1.38329 * 119.97599 * 0.25101 * 21 20 19 24 24 C 1.38217 * 119.99093 * 0.02562 * 23 21 20 25 25 H 1.09003 * 109.47292 * 295.61062 * 1 2 3 26 26 H 1.08996 * 109.47574 * 55.61470 * 1 2 3 27 27 H 1.09000 * 109.46995 * 175.61886 * 1 2 3 28 28 H 1.08994 * 109.46866 * 240.00116 * 2 1 3 29 29 H 1.09004 * 109.47269 * 120.00090 * 2 1 3 30 30 H 0.97001 * 119.99758 * 180.02562 * 8 7 5 31 31 H 1.00901 * 111.00102 * 327.93789 * 13 3 2 32 32 H 1.09002 * 109.46696 * 175.60530 * 16 14 13 33 33 H 1.08994 * 109.47418 * 295.60427 * 16 14 13 34 34 H 1.09000 * 109.46994 * 55.60900 * 16 14 13 35 35 H 1.09000 * 109.47090 * 305.00209 * 17 14 13 36 36 H 1.09002 * 109.47587 * 184.99769 * 17 14 13 37 37 H 1.08006 * 119.98992 * 359.97281 * 19 18 17 38 38 H 1.08002 * 120.00470 * 179.78877 * 20 19 18 39 39 H 1.08001 * 119.99734 * 180.02562 * 23 21 20 40 40 H 1.08002 * 119.99371 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6009 1.9831 -0.8385 5 6 3.5412 1.4446 -0.1319 6 1 4.1506 1.8877 0.6417 7 6 4.1366 0.8807 -1.2403 8 7 3.3945 0.3416 -2.1827 9 14 5.9974 0.8839 -1.4041 10 1 6.5962 0.1478 -0.2618 11 1 6.3834 0.2228 -2.6766 12 1 6.4920 2.2841 -1.4045 13 7 1.6581 2.0969 1.2585 14 6 1.6018 3.5560 1.0973 15 1 2.3518 3.8705 0.3715 16 6 0.2118 3.9611 0.6024 17 6 1.8804 4.2289 2.4427 18 6 3.2938 3.9294 2.8711 19 6 3.5620 2.8074 3.6329 20 6 4.8576 2.5347 4.0296 21 6 5.8875 3.3791 3.6558 22 35 7.6613 3.0023 4.1917 23 6 5.6193 4.4990 2.8894 24 6 4.3226 4.7741 2.4980 25 1 -0.3634 0.4442 0.9267 26 1 -0.3634 0.5803 -0.8480 27 1 -0.3633 -1.0247 -0.0785 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8134 -0.0554 -2.9623 31 1 0.7801 1.7369 1.6014 32 1 0.1449 5.0481 0.5573 33 1 0.0443 3.5453 -0.3910 34 1 -0.5438 3.5787 1.2886 35 1 1.1854 3.8472 3.1907 36 1 1.7515 5.3068 2.3436 37 1 2.7584 2.1460 3.9214 38 1 5.0664 1.6599 4.6277 39 1 6.4232 5.1583 2.5970 40 1 4.1131 5.6487 1.9000 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191497868.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:14 Heat of formation + Delta-G solvation = 8.770502 kcal Electronic energy + Delta-G solvation = -20355.363347 eV Core-core repulsion = 17408.360225 eV Total energy + Delta-G solvation = -2947.003121 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.10693 -36.98210 -34.15540 -32.20855 -31.44699 -30.65561 -29.73122 -28.56332 -26.04802 -25.69281 -22.82531 -22.42795 -21.19246 -19.90530 -19.53056 -16.32887 -16.15739 -15.37073 -14.95283 -14.72412 -14.17585 -14.02791 -13.46306 -13.17837 -13.10723 -12.89228 -12.65333 -12.44750 -11.93175 -11.75641 -11.67810 -11.40573 -11.05060 -10.86071 -10.76266 -10.64763 -10.58635 -10.35635 -10.26191 -10.04914 -9.90251 -9.67416 -9.53012 -9.02323 -8.59120 -8.30089 -8.10113 -7.17350 -5.92059 -3.94831 1.51778 1.75172 1.92501 3.38389 3.41575 3.47839 4.03711 4.49992 5.03607 5.16137 5.24557 5.25804 5.38109 5.56739 5.68107 5.74280 5.76576 5.90749 5.96048 6.06458 6.15564 6.16216 6.17351 6.30972 6.37313 6.40180 6.51933 6.58005 6.65576 6.72289 6.85098 7.04074 7.11253 7.21865 7.25390 7.54722 7.81561 7.98398 8.34384 8.44043 8.80825 9.14272 9.70425 11.13311 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.012257 B = 0.005265 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.934836 B = 5317.242840 C = 6766.041539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.222 3.778 4 H 0.000 1.000 5 C -0.485 4.485 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.886 3.114 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.677 5.677 14 C 0.092 3.908 15 H 0.083 0.917 16 C -0.177 4.177 17 C -0.071 4.071 18 C -0.033 4.033 19 C -0.075 4.075 20 C -0.092 4.092 21 C -0.096 4.096 22 Br -0.074 7.074 23 C -0.095 4.095 24 C -0.116 4.116 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.035 0.965 28 H 0.098 0.902 29 H 0.039 0.961 30 H 0.258 0.742 31 H 0.315 0.685 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.556 7.621 12.035 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.115 3.885 4 H 0.018 0.982 5 C -0.524 4.524 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.539 5.539 9 Si 0.715 3.285 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.308 5.308 14 C -0.019 4.019 15 H 0.101 0.899 16 C -0.236 4.236 17 C -0.109 4.109 18 C -0.034 4.034 19 C -0.094 4.094 20 C -0.112 4.112 21 C -0.175 4.175 22 Br 0.011 6.989 23 C -0.115 4.115 24 C -0.135 4.135 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.116 0.884 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.133 0.867 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.148 0.852 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.901 7.378 12.297 14.466 hybrid contribution -0.109 -0.007 -1.019 1.025 sum 1.792 7.371 11.278 13.592 Atomic orbital electron populations 1.21872 0.99736 0.99530 0.99457 1.21757 0.91063 1.00585 1.02952 1.19115 0.95265 0.89716 0.84380 0.98221 1.21162 0.91194 1.35922 1.04090 0.92048 1.24906 0.97672 0.95826 0.95970 1.69861 1.34606 1.39744 1.09676 0.86731 0.86408 0.78268 0.77107 1.20205 1.21606 1.20413 1.60773 1.34654 1.01728 1.33596 1.21421 0.95334 0.90366 0.94744 0.89858 1.22508 0.98653 1.00876 1.01560 1.20723 0.92493 0.99442 0.98250 1.19811 0.95532 0.93762 0.94279 1.20917 0.95775 0.95956 0.96705 1.21015 0.92205 0.98170 0.99813 1.21581 0.90037 1.00195 1.05711 1.96609 1.16422 1.95326 1.90571 1.20910 0.97256 0.96035 0.97295 1.20948 0.91953 1.00296 1.00256 0.94644 0.94012 0.94584 0.88406 0.94187 0.93195 0.86730 0.93143 0.92544 0.93260 0.91403 0.91671 0.85218 0.85784 0.85925 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.66 37.16 0.36 -2.41 16 2 C -0.13 -2.85 5.37 -26.73 -0.14 -3.00 16 3 C 0.22 5.22 1.85 -68.86 -0.13 5.10 16 4 H 0.00 0.00 7.32 -51.93 -0.38 -0.38 16 5 C -0.48 -12.96 8.45 -34.44 -0.29 -13.25 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.55 5.29 -17.82 -0.09 1.45 16 8 N -0.90 -25.45 11.29 55.43 0.63 -24.82 16 9 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.68 -12.89 5.42 -100.95 -0.55 -13.44 16 14 C 0.09 1.55 2.37 -67.71 -0.16 1.39 16 15 H 0.08 1.67 7.58 -51.93 -0.39 1.27 16 16 C -0.18 -2.58 9.17 37.16 0.34 -2.24 16 17 C -0.07 -0.99 5.03 -27.88 -0.14 -1.13 16 18 C -0.03 -0.52 4.96 -104.62 -0.52 -1.04 16 19 C -0.07 -1.18 9.29 -39.59 -0.37 -1.55 16 20 C -0.09 -1.46 9.79 -39.56 -0.39 -1.85 16 21 C -0.10 -1.54 6.22 -39.51 -0.25 -1.79 16 22 Br -0.07 -1.08 33.70 -68.01 -2.29 -3.37 16 23 C -0.10 -1.47 9.79 -39.56 -0.39 -1.86 16 24 C -0.12 -1.76 9.70 -39.59 -0.38 -2.15 16 25 H 0.03 0.58 6.59 -51.93 -0.34 0.24 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.10 2.56 5.95 -51.93 -0.31 2.25 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.32 5.54 6.21 -39.29 -0.24 5.30 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.92 7.63 -51.93 -0.40 0.53 16 34 H 0.05 0.65 8.05 -51.93 -0.42 0.23 16 35 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 36 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 38 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 39 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 344.64 15.07 5.19 5.19 Total: -1.00 -27.78 344.64 -10.84 -38.62 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -6.25 Total: 5.18 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -2.55 Total: -24.32 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.08 Total: -38.27 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 35 Polarization: -1.08 SS G_CDS: -2.29 Total: -3.37 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.78 -10.84 -38.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191497868.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.390 kcal (2) G-P(sol) polarization free energy of solvation -27.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds