Wall clock time and date at job start Tue Mar 31 2020 14:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38290 * 119.96259 * 2 1 4 4 C 1.38348 * 120.14203 * 180.02562 * 3 2 1 5 5 Br 1.89102 * 119.97407 * 180.02562 * 4 3 2 6 6 C 1.38215 * 120.05673 * 359.97438 * 4 3 2 7 7 C 1.38878 * 119.91182 * 0.02562 * 6 4 3 8 8 N 1.39680 * 120.06786 * 179.97438 * 7 6 4 9 9 C 1.46499 * 119.99665 * 0.02562 * 8 7 6 10 10 C 1.53002 * 109.46712 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47180 * 299.99831 * 10 9 8 12 12 C 1.52998 * 109.47453 * 59.99796 * 10 9 8 13 13 C 1.53001 * 109.47183 * 180.02562 * 10 9 8 14 14 C 1.50697 * 109.47317 * 180.02562 * 13 10 9 15 15 H 1.08008 * 119.99766 * 359.97438 * 14 13 10 16 16 C 1.37879 * 120.00273 * 180.02562 * 14 13 10 17 17 N 1.31511 * 119.99743 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99939 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47588 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47427 * 119.99956 * 18 16 14 21 21 H 1.48505 * 109.46746 * 239.99641 * 18 16 14 22 22 C 1.38088 * 119.95489 * 179.97438 * 2 1 3 23 23 H 1.09002 * 109.47047 * 89.99666 * 1 2 3 24 24 H 1.08998 * 109.47242 * 210.00110 * 1 2 3 25 25 H 1.09002 * 109.47156 * 330.00378 * 1 2 3 26 26 H 1.07998 * 119.92821 * 0.02562 * 3 2 1 27 27 H 1.08000 * 120.04903 * 179.72494 * 6 4 3 28 28 H 0.96999 * 119.99707 * 179.97438 * 8 7 6 29 29 H 1.09002 * 109.47440 * 299.99577 * 9 8 7 30 30 H 1.08999 * 109.47435 * 60.00313 * 9 8 7 31 31 H 1.09003 * 109.46893 * 59.99874 * 11 10 9 32 32 H 1.08996 * 109.47486 * 180.02562 * 11 10 9 33 33 H 1.08999 * 109.47175 * 300.00004 * 11 10 9 34 34 H 1.08999 * 109.47331 * 59.99606 * 12 10 9 35 35 H 1.08996 * 109.47609 * 179.97438 * 12 10 9 36 36 H 1.09003 * 109.46996 * 300.00357 * 12 10 9 37 37 H 1.09005 * 109.46861 * 299.99937 * 13 10 9 38 38 H 1.08990 * 109.47371 * 59.99684 * 13 10 9 39 39 H 0.97001 * 120.00247 * 180.02562 * 17 16 14 40 40 H 1.08002 * 120.02719 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1981 0.0000 4 6 3.5811 1.2024 -0.0005 5 35 4.5207 2.8435 0.0002 6 6 4.2771 0.0083 -0.0005 7 6 3.5858 -1.1962 -0.0005 8 7 4.2859 -2.4049 -0.0011 9 6 5.7509 -2.4028 -0.0011 10 6 6.2629 -3.8446 -0.0024 11 6 5.7539 -4.5677 1.2462 12 6 5.7539 -4.5655 -1.2522 13 6 7.7929 -3.8425 -0.0017 14 6 8.2972 -5.2625 -0.0036 15 1 7.5965 -6.0845 -0.0047 16 6 9.6532 -5.5126 -0.0029 17 7 10.5064 -4.5119 -0.0011 18 14 10.2782 -7.2729 -0.0045 19 1 9.1245 -8.2080 -0.0059 20 1 11.1045 -7.5038 -1.2167 21 1 11.1027 -7.5065 1.2083 22 6 2.1965 -1.1964 0.0005 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6559 2.1323 0.0004 27 1 5.3571 0.0118 -0.0054 28 1 3.8021 -3.2456 -0.0007 29 1 6.1136 -1.8881 -0.8909 30 1 6.1135 -1.8889 0.8891 31 1 4.6639 -4.5691 1.2463 32 1 6.1190 -5.5946 1.2456 33 1 6.1166 -4.0541 2.1367 34 1 6.1164 -4.0504 -2.1418 35 1 6.1190 -5.5925 -1.2534 36 1 4.6639 -4.5670 -1.2522 37 1 8.1559 -3.3272 -0.8911 38 1 8.1552 -3.3291 0.8888 39 1 11.4603 -4.6877 -0.0009 40 1 1.6562 -2.1316 0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230227487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:04 Heat of formation + Delta-G solvation = 0.592752 kcal Electronic energy + Delta-G solvation = -19365.542836 eV Core-core repulsion = 16418.185101 eV Total energy + Delta-G solvation = -2947.357735 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.67760 -37.62897 -34.63438 -33.06746 -32.37615 -30.30882 -28.97294 -27.19077 -26.90583 -26.54007 -25.67797 -22.91799 -22.05021 -20.61668 -18.29226 -16.85232 -16.46426 -16.08965 -15.51413 -14.57167 -14.53948 -14.06578 -13.91876 -13.87765 -13.25749 -12.96819 -12.88612 -12.79477 -12.40332 -12.28641 -12.10184 -11.50702 -11.37743 -11.10031 -11.06638 -10.86407 -10.85910 -10.66764 -10.41772 -10.27821 -10.26670 -9.95779 -9.60131 -9.24758 -8.96058 -8.63572 -8.39824 -7.31612 -6.03827 -4.04976 1.18146 1.53657 1.64540 3.27700 3.36001 3.38261 3.62919 3.71556 4.42451 4.69917 5.06672 5.12519 5.23541 5.31978 5.36470 5.43692 5.46177 5.54087 5.54918 5.71458 5.75831 5.82969 6.11152 6.12913 6.18083 6.23453 6.32008 6.33601 6.49744 6.59829 6.60350 6.72918 6.99916 7.03439 7.06701 7.44840 7.58730 7.70908 7.88030 7.94764 8.36984 8.99860 9.58519 11.07692 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.018205 B = 0.002987 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.632552 B = 9372.809397 C =10708.777200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.035 4.035 3 C -0.164 4.164 4 C -0.033 4.033 5 Br -0.061 7.061 6 C -0.179 4.179 7 C 0.236 3.764 8 N -0.733 5.733 9 C 0.129 3.871 10 C -0.070 4.070 11 C -0.126 4.126 12 C -0.126 4.126 13 C 0.036 3.964 14 C -0.511 4.511 15 H 0.060 0.940 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.192 4.192 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.123 0.877 27 H 0.132 0.868 28 H 0.400 0.600 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.029 0.971 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.029 0.971 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.260 0.740 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.489 12.383 -0.021 22.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.037 4.037 3 C -0.187 4.187 4 C -0.113 4.113 5 Br 0.024 6.976 6 C -0.204 4.204 7 C 0.128 3.872 8 N -0.360 5.360 9 C 0.005 3.995 10 C -0.071 4.071 11 C -0.183 4.183 12 C -0.183 4.183 13 C -0.001 4.001 14 C -0.549 4.549 15 H 0.078 0.922 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.215 4.215 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.141 0.859 27 H 0.150 0.850 28 H 0.237 0.763 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.069 0.931 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.702 13.025 -0.020 21.978 hybrid contribution 0.263 -1.596 -0.007 1.617 sum -17.439 11.430 -0.026 20.851 Atomic orbital electron populations 1.20783 0.90971 1.02774 1.02392 1.19524 0.95644 0.92034 0.96476 1.20588 0.91693 0.98047 1.08329 1.21406 0.94311 0.90825 1.04730 1.96681 1.76077 1.27145 1.97657 1.20582 1.00264 0.89704 1.09875 1.17765 0.90836 0.86602 0.91956 1.45067 1.06530 1.04560 1.79851 1.21663 0.78025 0.99108 1.00681 1.20863 1.00068 0.91031 0.95126 1.21746 0.97499 1.01884 0.97213 1.21744 0.97501 1.01889 0.97201 1.19095 0.86126 0.97541 0.97382 1.21215 0.91317 0.92197 1.50207 0.92225 1.25010 0.97192 0.96771 0.95508 1.69966 1.02042 1.30455 1.50923 0.86596 0.78927 0.85262 0.77568 1.19798 1.21096 1.21101 1.20542 0.91983 0.98150 1.10844 0.91024 0.91446 0.91464 0.85863 0.84976 0.76322 0.92422 0.92416 0.95210 0.91502 0.93423 0.93426 0.91501 0.95207 0.96402 0.96395 0.93070 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.00 0.36 -0.51 16 2 C -0.04 -0.38 5.88 -104.66 -0.62 -1.00 16 3 C -0.16 -1.92 9.44 -39.52 -0.37 -2.29 16 4 C -0.03 -0.43 6.22 -39.55 -0.25 -0.67 16 5 Br -0.06 -0.74 33.70 -68.01 -2.29 -3.03 16 6 C -0.18 -2.53 9.05 -39.35 -0.36 -2.89 16 7 C 0.24 3.21 6.65 -83.79 -0.56 2.66 16 8 N -0.73 -10.18 5.14 -58.63 -0.30 -10.48 16 9 C 0.13 2.09 3.80 -4.04 -0.02 2.08 16 10 C -0.07 -1.30 0.54 -154.51 -0.08 -1.38 16 11 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 12 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 13 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 14 C -0.51 -13.41 7.65 -34.44 -0.26 -13.67 16 15 H 0.06 1.52 5.68 -52.48 -0.30 1.22 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 18 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C -0.19 -2.27 9.55 -39.38 -0.38 -2.65 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 25 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 26 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 27 H 0.13 1.93 6.73 -52.49 -0.35 1.58 16 28 H 0.40 5.13 6.18 -40.82 -0.25 4.87 16 29 H 0.06 0.97 7.94 -51.93 -0.41 0.56 16 30 H 0.06 0.97 7.95 -51.93 -0.41 0.56 16 31 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 32 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 36 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 340.10 15.07 5.13 5.13 Total: -1.00 -27.95 340.10 -9.95 -37.90 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.06 Total: 1.73 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -2.14 Total: -21.92 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.44 Total: -35.84 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 35 Polarization: -0.74 SS G_CDS: -2.29 Total: -3.03 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.95 -9.95 -37.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230227487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.498 kcal (2) G-P(sol) polarization free energy of solvation -27.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds