Wall clock time and date at job start Tue Mar 31 2020 14:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38290 * 119.96259 * 2 1 4 4 C 1.38348 * 120.14203 * 180.02562 * 3 2 1 5 5 Br 1.89102 * 119.97407 * 180.02562 * 4 3 2 6 6 C 1.38215 * 120.05673 * 359.97438 * 4 3 2 7 7 C 1.38878 * 119.91182 * 0.02562 * 6 4 3 8 8 N 1.39680 * 120.06786 * 179.97438 * 7 6 4 9 9 C 1.46499 * 119.99665 * 0.02562 * 8 7 6 10 10 C 1.53002 * 109.46712 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47180 * 299.99831 * 10 9 8 12 12 C 1.52998 * 109.47453 * 59.99796 * 10 9 8 13 13 C 1.53001 * 109.47183 * 180.02562 * 10 9 8 14 14 C 1.50697 * 109.47317 * 180.02562 * 13 10 9 15 15 H 1.08008 * 119.99766 * 359.97438 * 14 13 10 16 16 C 1.37879 * 120.00273 * 180.02562 * 14 13 10 17 17 N 1.31511 * 119.99743 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99939 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47588 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47427 * 119.99956 * 18 16 14 21 21 H 1.48505 * 109.46746 * 239.99641 * 18 16 14 22 22 C 1.38088 * 119.95489 * 179.97438 * 2 1 3 23 23 H 1.09002 * 109.47047 * 89.99666 * 1 2 3 24 24 H 1.08998 * 109.47242 * 210.00110 * 1 2 3 25 25 H 1.09002 * 109.47156 * 330.00378 * 1 2 3 26 26 H 1.07998 * 119.92821 * 0.02562 * 3 2 1 27 27 H 1.08000 * 120.04903 * 179.72494 * 6 4 3 28 28 H 0.96999 * 119.99707 * 179.97438 * 8 7 6 29 29 H 1.09002 * 109.47440 * 299.99577 * 9 8 7 30 30 H 1.08999 * 109.47435 * 60.00313 * 9 8 7 31 31 H 1.09003 * 109.46893 * 59.99874 * 11 10 9 32 32 H 1.08996 * 109.47486 * 180.02562 * 11 10 9 33 33 H 1.08999 * 109.47175 * 300.00004 * 11 10 9 34 34 H 1.08999 * 109.47331 * 59.99606 * 12 10 9 35 35 H 1.08996 * 109.47609 * 179.97438 * 12 10 9 36 36 H 1.09003 * 109.46996 * 300.00357 * 12 10 9 37 37 H 1.09005 * 109.46861 * 299.99937 * 13 10 9 38 38 H 1.08990 * 109.47371 * 59.99684 * 13 10 9 39 39 H 0.97001 * 120.00247 * 180.02562 * 17 16 14 40 40 H 1.08002 * 120.02719 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1981 0.0000 4 6 3.5811 1.2024 -0.0005 5 35 4.5207 2.8435 0.0002 6 6 4.2771 0.0083 -0.0005 7 6 3.5858 -1.1962 -0.0005 8 7 4.2859 -2.4049 -0.0011 9 6 5.7509 -2.4028 -0.0011 10 6 6.2629 -3.8446 -0.0024 11 6 5.7539 -4.5677 1.2462 12 6 5.7539 -4.5655 -1.2522 13 6 7.7929 -3.8425 -0.0017 14 6 8.2972 -5.2625 -0.0036 15 1 7.5965 -6.0845 -0.0047 16 6 9.6532 -5.5126 -0.0029 17 7 10.5064 -4.5119 -0.0011 18 14 10.2782 -7.2729 -0.0045 19 1 9.1245 -8.2080 -0.0059 20 1 11.1045 -7.5038 -1.2167 21 1 11.1027 -7.5065 1.2083 22 6 2.1965 -1.1964 0.0005 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6559 2.1323 0.0004 27 1 5.3571 0.0118 -0.0054 28 1 3.8021 -3.2456 -0.0007 29 1 6.1136 -1.8881 -0.8909 30 1 6.1135 -1.8889 0.8891 31 1 4.6639 -4.5691 1.2463 32 1 6.1190 -5.5946 1.2456 33 1 6.1166 -4.0541 2.1367 34 1 6.1164 -4.0504 -2.1418 35 1 6.1190 -5.5925 -1.2534 36 1 4.6639 -4.5670 -1.2522 37 1 8.1559 -3.3272 -0.8911 38 1 8.1552 -3.3291 0.8888 39 1 11.4603 -4.6877 -0.0009 40 1 1.6562 -2.1316 0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230227487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:03 Heat of formation + Delta-G solvation = -12.614890 kcal Electronic energy + Delta-G solvation = -19366.115562 eV Core-core repulsion = 16418.185101 eV Total energy + Delta-G solvation = -2947.930462 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.69493 -39.01061 -35.94003 -34.31232 -33.94364 -31.36315 -30.07486 -28.87826 -27.97866 -27.89694 -26.98900 -24.73704 -23.02918 -21.65268 -19.76055 -18.37878 -17.96424 -17.23138 -16.66594 -16.35762 -15.84888 -15.27243 -15.05600 -14.83582 -14.48267 -14.37351 -14.12606 -14.03592 -13.89609 -13.36195 -13.04899 -12.94010 -12.72143 -12.68630 -12.36600 -12.35814 -12.26466 -12.01175 -11.98597 -11.89909 -11.49928 -11.24090 -10.99195 -10.84763 -10.65048 -10.52805 -9.56681 -8.37656 -8.15420 -6.22645 0.22484 0.57930 0.67650 1.40126 1.41669 1.52917 2.40534 2.52411 2.76224 3.19319 3.85529 3.96952 4.08726 4.19627 4.22881 4.28769 4.41191 4.49643 4.63521 4.69819 4.73091 4.73488 4.91960 4.95482 4.95744 5.10572 5.10871 5.21122 5.27778 5.34797 5.42410 5.48442 5.51063 5.54397 5.63148 5.79543 5.81835 5.89211 6.26207 6.36442 6.85667 6.92827 7.45100 8.97137 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.018205 B = 0.002987 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.632552 B = 9372.809397 C =10708.777200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.033 4.033 3 C -0.164 4.164 4 C -0.046 4.046 5 Br -0.059 7.059 6 C -0.202 4.202 7 C 0.222 3.778 8 N -0.728 5.728 9 C 0.146 3.854 10 C -0.064 4.064 11 C -0.120 4.120 12 C -0.119 4.119 13 C 0.041 3.959 14 C -0.514 4.514 15 H 0.069 0.931 16 C -0.004 4.004 17 N -0.937 5.937 18 Si 0.956 3.044 19 H -0.259 1.259 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.189 4.189 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.141 0.859 27 H 0.115 0.885 28 H 0.408 0.592 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.051 0.949 36 H 0.065 0.935 37 H -0.013 1.013 38 H -0.013 1.013 39 H 0.260 0.740 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.569 11.534 -0.023 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.035 4.035 3 C -0.186 4.186 4 C -0.126 4.126 5 Br 0.026 6.974 6 C -0.227 4.227 7 C 0.116 3.884 8 N -0.358 5.358 9 C 0.021 3.979 10 C -0.064 4.064 11 C -0.177 4.177 12 C -0.177 4.177 13 C 0.003 3.997 14 C -0.552 4.552 15 H 0.088 0.912 16 C -0.201 4.201 17 N -0.578 5.578 18 Si 0.781 3.219 19 H -0.182 1.182 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.212 4.212 23 H 0.102 0.898 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.158 0.842 27 H 0.133 0.867 28 H 0.246 0.754 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.006 0.994 38 H 0.006 0.994 39 H 0.068 0.932 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -20.822 12.179 -0.021 24.122 hybrid contribution 1.150 -1.219 -0.007 1.676 sum -19.673 10.959 -0.028 22.519 Atomic orbital electron populations 1.20859 0.88300 1.04046 1.03523 1.19944 0.97507 0.91274 0.94767 1.20902 0.91126 0.99342 1.07193 1.21558 0.95105 0.90641 1.05250 1.96670 1.76345 1.26709 1.97669 1.20574 0.99718 0.90782 1.11576 1.17902 0.91692 0.85981 0.92867 1.44747 1.05032 1.05217 1.80810 1.21225 0.79871 0.97129 0.99653 1.20671 0.96193 0.92927 0.96653 1.21663 0.99698 1.00390 0.95929 1.21661 0.99699 1.00396 0.95917 1.18962 0.90336 0.95938 0.94418 1.21623 0.91564 0.93363 1.48639 0.91247 1.25910 0.97744 1.00904 0.95502 1.70112 1.02278 1.32800 1.52630 0.85531 0.78560 0.80435 0.77337 1.18248 1.20991 1.21001 1.20828 0.91096 0.99582 1.09657 0.89797 0.90197 0.90280 0.84165 0.86669 0.75398 0.93630 0.93627 0.91605 0.92963 0.94411 0.94411 0.92961 0.91604 0.99428 0.99418 0.93158 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.01 71.23 0.71 -0.56 16 2 C -0.03 -0.62 5.88 -19.89 -0.12 -0.74 16 3 C -0.16 -3.47 9.44 22.31 0.21 -3.26 16 4 C -0.05 -1.16 6.22 22.29 0.14 -1.02 16 5 Br -0.06 -1.42 33.70 -20.37 -0.69 -2.11 16 6 C -0.20 -5.70 9.05 22.42 0.20 -5.50 16 7 C 0.22 5.75 6.65 38.21 0.25 6.00 16 8 N -0.73 -19.22 5.14 -339.42 -1.74 -20.97 16 9 C 0.15 4.82 3.80 86.38 0.33 5.15 16 10 C -0.06 -2.37 0.54 -52.18 -0.03 -2.40 16 11 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 12 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 13 C 0.04 2.05 4.04 29.85 0.12 2.17 16 14 C -0.51 -27.42 7.65 25.60 0.20 -27.23 16 15 H 0.07 3.51 5.68 -2.91 -0.02 3.49 16 16 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 17 N -0.94 -56.49 13.29 21.45 0.28 -56.21 16 18 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 19 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 C -0.19 -3.93 9.55 22.40 0.21 -3.71 16 23 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 25 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 26 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 27 H 0.12 3.56 6.73 -2.91 -0.02 3.54 16 28 H 0.41 9.27 6.18 -92.71 -0.57 8.70 16 29 H 0.05 1.60 7.94 -2.39 -0.02 1.58 16 30 H 0.05 1.60 7.95 -2.39 -0.02 1.58 16 31 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 32 H 0.05 1.91 6.62 -2.39 -0.02 1.90 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.05 1.91 6.62 -2.39 -0.02 1.90 16 36 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 37 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 38 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 39 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 40 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -61.87 340.10 4.19 -57.67 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.46 Total: 13.82 kcal Atomic # 6 Polarization: -41.61 SS G_CDS: 3.85 Total: -37.76 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -1.46 Total: -77.17 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 35 Polarization: -1.42 SS G_CDS: -0.69 Total: -2.11 kcal Total: -61.87 4.19 -57.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230227487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.058 kcal (2) G-P(sol) polarization free energy of solvation -61.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds